Wall clock time and date at job start Tue Mar 31 2020 12:26:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46756 * 2 1 4 4 C 1.52989 * 109.47218 * 240.00100 * 2 1 3 5 5 C 1.53001 * 109.47022 * 119.99814 * 2 1 3 6 6 C 1.53003 * 109.46774 * 60.00171 * 5 2 1 7 7 C 1.53001 * 109.47052 * 179.97438 * 6 5 2 8 8 C 1.52997 * 109.47119 * 180.02562 * 7 6 5 9 9 C 1.53001 * 109.46841 * 180.02562 * 8 7 6 10 10 C 1.50709 * 109.47108 * 179.97438 * 9 8 7 11 11 O 1.21291 * 119.99520 * 359.97438 * 10 9 8 12 12 N 1.34773 * 120.00238 * 179.97438 * 10 9 8 13 13 C 1.39934 * 120.00005 * 174.88976 * 12 10 9 14 14 C 1.39294 * 119.94501 * 145.78381 * 13 12 10 15 15 C 1.38483 * 120.42931 * 180.02562 * 14 13 12 16 16 C 1.37690 * 120.32043 * 359.97438 * 15 14 13 17 17 C 1.40739 * 119.88274 * 0.02562 * 16 15 14 18 18 C 1.41410 * 120.20463 * 179.97438 * 17 16 15 19 19 H 1.08006 * 119.99598 * 205.17493 * 18 17 16 20 20 C 1.39927 * 120.00705 * 25.17815 * 18 17 16 21 21 N 1.30837 * 119.99797 * 16.78875 * 20 18 17 22 22 Si 1.86796 * 120.00403 * 196.79745 * 20 18 17 23 23 H 1.48497 * 109.47254 * 94.96032 * 22 20 18 24 24 H 1.48498 * 109.47287 * 214.95974 * 22 20 18 25 25 H 1.48498 * 109.47020 * 334.95887 * 22 20 18 26 26 C 1.38237 * 119.94620 * 325.51339 * 13 12 10 27 27 H 1.09002 * 109.47899 * 300.00086 * 1 2 3 28 28 H 1.09006 * 109.47188 * 60.00249 * 1 2 3 29 29 H 1.09000 * 109.47221 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47270 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.47507 * 300.00205 * 3 2 1 32 32 H 1.09003 * 109.47191 * 60.00112 * 3 2 1 33 33 H 1.09001 * 109.47634 * 299.99705 * 4 2 1 34 34 H 1.09007 * 109.47492 * 60.00263 * 4 2 1 35 35 H 1.09003 * 109.47221 * 179.97438 * 4 2 1 36 36 H 1.09002 * 109.46865 * 300.00733 * 5 2 1 37 37 H 1.08994 * 109.46941 * 180.02562 * 5 2 1 38 38 H 1.09006 * 109.46755 * 60.00162 * 6 5 2 39 39 H 1.08994 * 109.47292 * 299.99669 * 6 5 2 40 40 H 1.09003 * 109.47027 * 60.00043 * 7 6 5 41 41 H 1.09001 * 109.46818 * 300.00756 * 7 6 5 42 42 H 1.08990 * 109.47344 * 60.00321 * 8 7 6 43 43 H 1.09003 * 109.47203 * 299.99681 * 8 7 6 44 44 H 1.08998 * 109.47429 * 299.99635 * 9 8 7 45 45 H 1.08994 * 109.47587 * 59.99874 * 9 8 7 46 46 H 0.97004 * 119.99772 * 354.89348 * 12 10 9 47 47 H 1.08000 * 119.78664 * 359.97438 * 14 13 12 48 48 H 1.07999 * 119.84314 * 180.02562 * 15 14 13 49 49 H 1.08004 * 120.05706 * 180.02562 * 16 15 14 50 50 H 0.96998 * 120.00174 * 180.02562 * 21 20 18 51 51 H 1.07998 * 120.16325 * 359.97438 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0400 -0.7212 1.2493 6 6 1.5300 -2.1637 1.2492 7 6 2.0404 -2.8852 2.4982 8 6 1.5309 -4.3279 2.4978 9 6 2.0409 -5.0491 3.7471 10 6 1.5386 -6.4700 3.7471 11 8 0.8409 -6.8665 2.8376 12 7 1.8645 -7.3000 4.7576 13 6 1.3125 -8.5846 4.8137 14 6 2.0644 -9.6431 5.3182 15 6 1.5282 -10.9185 5.3778 16 6 0.2446 -11.1542 4.9390 17 6 -0.5270 -10.0944 4.4268 18 6 -1.8459 -10.3288 3.9737 19 1 -2.2880 -9.6745 3.2369 20 6 -2.5782 -11.4083 4.4800 21 7 -2.1961 -11.9978 5.5838 22 14 -4.1012 -12.0081 3.5799 23 1 -3.7350 -13.1337 2.6832 24 1 -5.1100 -12.4696 4.5670 25 1 -4.6692 -10.8977 2.7739 26 6 0.0199 -8.8000 4.3735 27 1 -0.3635 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8901 29 1 -0.3634 -1.0277 -0.0005 30 1 3.1300 1.4426 0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6766 1.9563 0.8900 33 1 1.6768 -1.7489 -1.2492 34 1 1.6767 -0.2073 -2.1392 35 1 3.1300 -0.7208 -1.2494 36 1 1.6765 -0.2074 2.1392 37 1 3.1299 -0.7208 1.2495 38 1 1.8934 -2.6775 0.3592 39 1 0.4400 -2.1638 1.2492 40 1 1.6774 -2.3715 3.3884 41 1 3.1304 -2.8851 2.4978 42 1 1.8943 -4.8413 1.6077 43 1 0.4409 -4.3283 2.4980 44 1 3.1309 -5.0487 3.7473 45 1 1.6773 -4.5356 4.6370 46 1 2.4818 -7.0068 5.4461 47 1 3.0723 -9.4682 5.6643 48 1 2.1195 -11.7322 5.7711 49 1 -0.1695 -12.1505 4.9878 50 1 -2.7035 -12.7463 5.9346 51 1 -0.5655 -7.9791 3.9866 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001144682612.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:22 Heat of formation + Delta-G solvation = -80.985246 kcal Electronic energy + Delta-G solvation = -25408.380208 eV Core-core repulsion = 21883.781799 eV Total energy + Delta-G solvation = -3524.598409 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.22058 -39.22328 -38.94922 -36.33145 -35.89988 -34.81988 -32.31115 -31.76628 -30.02770 -28.13781 -28.13105 -27.62041 -27.22841 -24.24022 -22.94294 -22.54293 -21.79400 -20.97852 -19.52901 -19.36257 -18.00121 -17.41369 -17.05297 -16.79564 -16.46887 -16.07902 -15.75555 -15.31672 -15.25092 -15.01784 -14.89159 -14.60588 -14.34806 -13.99988 -13.79308 -13.53778 -13.16423 -13.10017 -12.97006 -12.94978 -12.89866 -12.78258 -12.54756 -12.48073 -12.27378 -12.19571 -12.02825 -11.96273 -11.85961 -11.53401 -11.47524 -11.25972 -11.17552 -11.15134 -11.09283 -10.86365 -10.58013 -9.41480 -8.75949 -8.61627 -6.38979 0.86802 0.98711 1.34552 1.46990 1.48593 1.84958 2.19369 2.31418 2.71997 3.67968 3.73146 3.82537 3.94952 3.97479 4.09000 4.10590 4.37738 4.41987 4.46146 4.56045 4.62205 4.69497 4.72464 4.76585 4.80090 4.85547 4.95364 4.96420 5.01863 5.05109 5.07202 5.08901 5.10183 5.11391 5.12546 5.15739 5.25245 5.26754 5.31952 5.34896 5.41108 5.47573 5.51662 5.61970 5.64300 5.76417 5.86017 6.06519 6.10057 6.33829 6.66605 6.69495 6.92166 6.99852 7.39228 8.31706 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.016434 B = 0.002076 C = 0.001883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.390872 B =13485.623229 C =14864.499824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.074 4.074 3 C -0.139 4.139 4 C -0.144 4.144 5 C -0.102 4.102 6 C -0.124 4.124 7 C -0.109 4.109 8 C -0.103 4.103 9 C -0.123 4.123 10 C 0.494 3.506 11 O -0.574 6.574 12 N -0.661 5.661 13 C 0.156 3.844 14 C -0.252 4.252 15 C -0.092 4.092 16 C -0.199 4.199 17 C 0.087 3.913 18 C -0.502 4.502 19 H 0.061 0.939 20 C 0.037 3.963 21 N -0.822 5.822 22 Si 0.982 3.018 23 H -0.259 1.259 24 H -0.260 1.260 25 H -0.266 1.266 26 C -0.238 4.238 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.050 0.950 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.051 0.949 34 H 0.053 0.947 35 H 0.057 0.943 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.058 0.942 39 H 0.055 0.945 40 H 0.073 0.927 41 H 0.077 0.923 42 H 0.050 0.950 43 H 0.044 0.956 44 H 0.126 0.874 45 H 0.119 0.881 46 H 0.422 0.578 47 H 0.133 0.867 48 H 0.123 0.877 49 H 0.104 0.896 50 H 0.290 0.710 51 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.462 21.774 -4.594 24.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.074 4.074 3 C -0.196 4.196 4 C -0.201 4.201 5 C -0.140 4.140 6 C -0.162 4.162 7 C -0.146 4.146 8 C -0.141 4.141 9 C -0.163 4.163 10 C 0.283 3.717 11 O -0.452 6.452 12 N -0.308 5.308 13 C 0.063 3.937 14 C -0.273 4.273 15 C -0.110 4.110 16 C -0.218 4.218 17 C 0.084 3.916 18 C -0.532 4.532 19 H 0.079 0.921 20 C -0.178 4.178 21 N -0.448 5.448 22 Si 0.803 3.197 23 H -0.184 1.184 24 H -0.185 1.185 25 H -0.190 1.190 26 C -0.260 4.260 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.091 0.909 41 H 0.095 0.905 42 H 0.069 0.931 43 H 0.063 0.937 44 H 0.144 0.856 45 H 0.137 0.863 46 H 0.260 0.740 47 H 0.151 0.849 48 H 0.141 0.859 49 H 0.122 0.878 50 H 0.100 0.900 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 9.915 21.392 -5.056 24.114 hybrid contribution -0.796 -0.544 -0.086 0.968 sum 9.118 20.848 -5.143 23.329 Atomic orbital electron populations 1.21941 0.95033 1.01571 1.01661 1.20587 0.95449 0.95808 0.95518 1.21849 1.01080 0.94887 1.01805 1.21933 1.01054 1.00147 0.96995 1.21597 1.00671 0.94520 0.97184 1.21708 1.00605 0.95847 0.98010 1.21545 1.01408 0.92967 0.98675 1.21314 1.00243 0.96126 0.96436 1.21742 1.04267 0.88235 1.02034 1.21926 0.79734 0.89460 0.80536 1.90739 1.39241 1.78104 1.37145 1.43491 1.47194 1.12380 1.27696 1.17572 0.91528 0.85054 0.99542 1.20501 1.00295 0.91938 1.14576 1.20854 0.94865 0.96540 0.98778 1.21303 0.94464 0.98731 1.07351 1.17864 0.93372 0.90936 0.89437 1.19729 0.99028 1.11858 1.22593 0.92087 1.26709 1.02284 0.94622 0.94180 1.69859 1.39384 1.18904 1.16612 0.85199 0.76591 0.79039 0.78884 1.18388 1.18457 1.18986 1.20928 0.95726 0.96300 1.13040 0.92578 0.92760 0.93089 0.92368 0.92677 0.92504 0.93034 0.92787 0.92414 0.91714 0.91480 0.92365 0.92661 0.90873 0.90478 0.93138 0.93695 0.85610 0.86262 0.73973 0.84941 0.85866 0.87782 0.89967 0.90002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 8.12 71.98 0.58 -1.46 16 2 C -0.07 -0.96 0.80 -52.18 -0.04 -1.00 16 3 C -0.14 -1.54 8.47 71.98 0.61 -0.93 16 4 C -0.14 -1.96 8.12 71.98 0.58 -1.38 16 5 C -0.10 -1.33 4.27 30.60 0.13 -1.19 16 6 C -0.12 -1.99 4.51 30.60 0.14 -1.85 16 7 C -0.11 -1.66 5.21 30.59 0.16 -1.50 16 8 C -0.10 -2.32 4.50 30.59 0.14 -2.19 16 9 C -0.12 -2.55 5.70 29.85 0.17 -2.38 16 10 C 0.49 17.08 7.56 87.66 0.66 17.75 16 11 O -0.57 -26.74 13.74 -3.06 -0.04 -26.78 16 12 N -0.66 -22.58 5.34 -303.64 -1.62 -24.20 16 13 C 0.16 7.16 6.25 38.10 0.24 7.40 16 14 C -0.25 -10.73 9.97 22.58 0.23 -10.51 16 15 C -0.09 -4.26 10.02 22.20 0.22 -4.04 16 16 C -0.20 -10.91 8.69 22.75 0.20 -10.71 16 17 C 0.09 5.11 5.57 -21.31 -0.12 4.99 16 18 C -0.50 -29.81 9.05 23.46 0.21 -29.60 16 19 H 0.06 3.66 7.90 -2.91 -0.02 3.63 16 20 C 0.04 1.98 5.16 85.25 0.44 2.42 16 21 N -0.82 -44.52 10.94 21.82 0.24 -44.28 16 22 Si 0.98 40.80 29.59 68.60 2.03 42.83 16 23 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 24 H -0.26 -9.99 7.11 99.48 0.71 -9.29 16 25 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 26 C -0.24 -13.19 8.39 22.85 0.19 -13.00 16 27 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.05 0.72 8.14 -2.38 -0.02 0.70 16 29 H 0.05 0.81 6.43 -2.39 -0.02 0.80 16 30 H 0.06 0.59 8.14 -2.38 -0.02 0.57 16 31 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.05 0.79 6.43 -2.39 -0.02 0.77 16 34 H 0.05 0.70 8.14 -2.38 -0.02 0.68 16 35 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.06 1.01 6.43 -2.38 -0.02 1.00 16 39 H 0.05 1.00 6.43 -2.39 -0.02 0.98 16 40 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.05 1.32 8.10 -2.39 -0.02 1.30 16 43 H 0.04 1.23 8.10 -2.39 -0.02 1.21 16 44 H 0.13 1.77 8.14 -2.39 -0.02 1.75 16 45 H 0.12 1.88 8.14 -2.39 -0.02 1.86 16 46 H 0.42 10.07 8.82 -92.71 -0.82 9.25 16 47 H 0.13 4.47 8.06 -2.91 -0.02 4.45 16 48 H 0.12 4.85 8.06 -2.91 -0.02 4.82 16 49 H 0.10 5.91 6.16 -2.91 -0.02 5.89 16 50 H 0.29 14.01 8.30 -92.71 -0.77 13.24 16 51 H 0.08 4.79 6.48 -2.91 -0.02 4.78 16 Total: -1.00 -72.59 402.83 5.42 -67.17 By element: Atomic # 1 Polarization: 34.37 SS G_CDS: 0.07 Total: 34.45 kcal Atomic # 6 Polarization: -53.92 SS G_CDS: 4.74 Total: -49.18 kcal Atomic # 7 Polarization: -67.10 SS G_CDS: -1.38 Total: -68.48 kcal Atomic # 8 Polarization: -26.74 SS G_CDS: -0.04 Total: -26.78 kcal Atomic # 14 Polarization: 40.80 SS G_CDS: 2.03 Total: 42.83 kcal Total: -72.59 5.42 -67.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144682612.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.819 kcal (2) G-P(sol) polarization free energy of solvation -72.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds