Wall clock time and date at job start Tue Mar 31 2020 11:12:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00011 * 2 1 4 4 H 1.48499 * 109.47008 * 269.99848 * 3 2 1 5 5 H 1.48502 * 109.46908 * 30.00062 * 3 2 1 6 6 H 1.48501 * 109.46953 * 149.99763 * 3 2 1 7 7 C 1.37879 * 120.00179 * 180.02562 * 2 1 3 8 8 C 1.51273 * 120.85198 * 180.02562 * 7 2 1 9 9 C 1.53088 * 108.49534 * 231.33385 * 8 7 2 10 10 C 1.52965 * 109.47453 * 305.31351 * 9 8 7 11 11 H 1.09002 * 109.41499 * 303.56866 * 10 9 8 12 12 N 1.46499 * 109.41221 * 183.71053 * 10 9 8 13 13 C 1.34776 * 119.99963 * 84.85835 * 12 10 9 14 14 O 1.21275 * 120.00082 * 0.02562 * 13 12 10 15 15 C 1.50707 * 120.00043 * 179.97438 * 13 12 10 16 16 C 1.53000 * 109.46960 * 299.99919 * 15 13 12 17 17 C 1.53001 * 109.47073 * 179.97438 * 16 15 13 18 18 C 1.52998 * 109.47063 * 300.00569 * 17 16 15 19 19 C 1.53000 * 109.47272 * 59.99843 * 18 17 16 20 20 C 1.52995 * 109.46987 * 60.00156 * 19 18 17 21 21 C 1.53003 * 109.47139 * 299.99384 * 20 19 18 22 22 C 1.53000 * 109.46678 * 60.00427 * 21 20 19 23 23 C 1.52995 * 109.47052 * 180.02562 * 15 13 12 24 24 C 1.52994 * 109.46886 * 59.99917 * 15 13 12 25 25 C 1.52957 * 109.75768 * 63.63992 * 10 9 8 26 26 C 1.51272 * 120.84935 * 359.97438 * 7 2 1 27 27 H 0.97000 * 120.00271 * 0.02562 * 1 2 3 28 28 H 1.09007 * 109.62232 * 351.03883 * 8 7 2 29 29 H 1.08994 * 109.62759 * 111.41259 * 8 7 2 30 30 H 1.09004 * 109.38594 * 185.35385 * 9 8 7 31 31 H 1.08994 * 109.51013 * 65.35040 * 9 8 7 32 32 H 0.96998 * 120.00108 * 264.85878 * 12 10 9 33 33 H 1.09001 * 109.47537 * 300.00099 * 16 15 13 34 34 H 1.09008 * 109.46720 * 60.00342 * 16 15 13 35 35 H 1.08997 * 109.46997 * 180.02562 * 17 16 15 36 36 H 1.08996 * 109.47181 * 299.99446 * 18 17 16 37 37 H 1.09004 * 109.46925 * 180.02562 * 18 17 16 38 38 H 1.08997 * 109.46718 * 179.97438 * 19 18 17 39 39 H 1.08997 * 109.47122 * 180.02562 * 20 19 18 40 40 H 1.09001 * 109.47875 * 59.99886 * 20 19 18 41 41 H 1.09002 * 109.47212 * 180.02562 * 21 20 19 42 42 H 1.09001 * 109.47430 * 60.00329 * 22 21 20 43 43 H 1.09001 * 109.47168 * 180.02562 * 22 21 20 44 44 H 1.08997 * 109.47267 * 299.99981 * 23 15 13 45 45 H 1.08997 * 109.47584 * 59.99719 * 23 15 13 46 46 H 1.08996 * 109.47446 * 299.99924 * 24 15 13 47 47 H 1.08997 * 109.47356 * 60.00292 * 24 15 13 48 48 H 1.09005 * 109.48472 * 56.42044 * 25 10 9 49 49 H 1.09002 * 109.48201 * 176.45458 * 25 10 9 50 50 H 1.09000 * 109.62600 * 8.95852 * 26 7 2 51 51 H 1.09004 * 109.62497 * 248.39200 * 26 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 6 3.5171 -1.2165 0.0000 9 6 3.9897 -2.1299 -1.1340 10 6 3.3403 -3.5067 -0.9840 11 1 3.5740 -3.9123 0.0004 12 7 3.8609 -4.4057 -2.0170 13 6 5.0169 -5.0680 -1.8138 14 8 5.6261 -4.9202 -0.7756 15 6 5.5521 -5.9932 -2.8763 16 6 4.5334 -7.1022 -3.1470 17 6 5.0765 -8.0412 -4.2261 18 6 5.3240 -7.2507 -5.5124 19 6 6.3427 -6.1418 -5.2416 20 6 7.6569 -6.7622 -4.7635 21 6 7.4094 -7.5526 -3.4770 22 6 6.3907 -8.6616 -3.7478 23 6 6.8658 -6.6140 -2.3972 24 6 5.7999 -5.2032 -4.1628 25 6 1.8234 -3.3823 -1.1356 26 6 1.2677 -2.5152 -0.0005 27 1 -0.4850 0.8400 -0.0004 28 1 3.8983 -0.2077 -0.1591 29 1 3.8773 -1.5973 0.9557 30 1 5.0739 -2.2324 -1.0880 31 1 3.7056 -1.6965 -2.0928 32 1 3.3735 -4.5242 -2.8473 33 1 4.3568 -7.6651 -2.2304 34 1 3.5972 -6.6602 -3.4881 35 1 4.3506 -8.8310 -4.4193 36 1 4.3877 -6.8088 -5.8531 37 1 5.7104 -7.9198 -6.2813 38 1 6.5193 -5.5790 -6.1582 39 1 8.3825 -5.9722 -4.5701 40 1 8.0439 -7.4312 -5.5321 41 1 8.3459 -7.9943 -3.1361 42 1 6.7776 -9.3306 -4.5165 43 1 6.2141 -9.2244 -2.8312 44 1 7.5918 -5.8243 -2.2040 45 1 6.6889 -7.1769 -1.4808 46 1 4.8638 -4.7612 -4.5038 47 1 6.5257 -4.4131 -3.9699 48 1 1.5906 -2.9192 -2.0946 49 1 1.3711 -4.3730 -1.0909 50 1 0.2036 -2.3409 -0.1600 51 1 1.4200 -3.0193 0.9539 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001144767958.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:37 Heat of formation + Delta-G solvation = -89.813426 kcal Electronic energy + Delta-G solvation = -28472.570020 eV Core-core repulsion = 24947.588793 eV Total energy + Delta-G solvation = -3524.981228 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.84823 -39.05250 -36.69813 -33.84626 -32.90858 -32.83540 -32.68686 -31.29530 -29.65260 -27.24205 -26.13342 -25.97573 -23.45669 -21.84868 -21.66474 -21.57576 -21.32249 -19.68821 -19.30524 -17.84157 -16.69151 -15.88123 -15.63529 -14.77685 -14.74223 -14.58945 -14.50741 -14.38473 -14.28955 -13.50637 -13.38562 -13.32349 -13.11913 -12.95836 -12.70079 -12.59482 -12.56075 -12.19320 -12.04022 -11.65290 -11.12900 -11.09602 -11.04400 -11.02686 -10.99450 -10.97482 -10.80872 -10.68452 -10.52999 -10.10270 -9.97440 -9.84372 -9.82961 -9.63665 -9.26615 -8.94246 -8.79297 -8.46549 -8.26801 -6.10321 -4.00640 2.99358 3.27238 3.36360 3.39464 3.58351 4.27843 4.33780 4.36640 4.39244 4.83116 4.91270 4.98975 5.00433 5.03262 5.08661 5.12695 5.16961 5.18534 5.18601 5.43355 5.49389 5.56247 5.56689 5.71454 5.78672 5.80861 5.82891 5.85246 5.87406 5.91866 5.94995 5.96636 6.08012 6.18037 6.22761 6.27822 6.34005 6.34431 6.49299 6.51950 6.73268 6.81868 6.90896 6.98111 7.11136 7.27967 7.45285 7.65321 7.72212 7.78447 7.99987 8.38644 8.64803 8.96434 9.55077 10.99280 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.026572 B = 0.003188 C = 0.003125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.487478 B = 8781.447613 C = 8958.596875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.076 3.924 3 Si 0.888 3.112 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.267 1.267 7 C -0.488 4.488 8 C -0.014 4.014 9 C -0.112 4.112 10 C 0.154 3.846 11 H 0.077 0.923 12 N -0.722 5.722 13 C 0.517 3.483 14 O -0.544 6.544 15 C -0.070 4.070 16 C -0.100 4.100 17 C -0.084 4.084 18 C -0.109 4.109 19 C -0.084 4.084 20 C -0.109 4.109 21 C -0.087 4.087 22 C -0.108 4.108 23 C -0.086 4.086 24 C -0.100 4.100 25 C -0.114 4.114 26 C 0.013 3.987 27 H 0.264 0.736 28 H 0.030 0.970 29 H 0.019 0.981 30 H 0.035 0.965 31 H 0.050 0.950 32 H 0.392 0.608 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.072 0.928 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.072 0.928 39 H 0.062 0.938 40 H 0.061 0.939 41 H 0.071 0.929 42 H 0.061 0.939 43 H 0.062 0.938 44 H 0.068 0.932 45 H 0.068 0.932 46 H 0.067 0.933 47 H 0.067 0.933 48 H 0.053 0.947 49 H 0.034 0.966 50 H 0.060 0.940 51 H 0.006 0.994 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.359 -16.161 -12.681 23.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.127 4.127 3 Si 0.716 3.284 4 H -0.205 1.205 5 H -0.216 1.216 6 H -0.192 1.192 7 C -0.507 4.507 8 C -0.052 4.052 9 C -0.151 4.151 10 C 0.051 3.949 11 H 0.095 0.905 12 N -0.371 5.371 13 C 0.303 3.697 14 O -0.421 6.421 15 C -0.073 4.073 16 C -0.138 4.138 17 C -0.102 4.102 18 C -0.146 4.146 19 C -0.102 4.102 20 C -0.146 4.146 21 C -0.105 4.105 22 C -0.146 4.146 23 C -0.124 4.124 24 C -0.138 4.138 25 C -0.152 4.152 26 C -0.025 4.025 27 H 0.074 0.926 28 H 0.048 0.952 29 H 0.037 0.963 30 H 0.054 0.946 31 H 0.069 0.931 32 H 0.225 0.775 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.090 0.910 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.090 0.910 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.089 0.911 42 H 0.079 0.921 43 H 0.081 0.919 44 H 0.087 0.913 45 H 0.087 0.913 46 H 0.086 0.914 47 H 0.086 0.914 48 H 0.072 0.928 49 H 0.053 0.947 50 H 0.079 0.921 51 H 0.024 0.976 Dipole moment (debyes) X Y Z Total from point charges 11.614 -15.921 -11.911 23.027 hybrid contribution 0.132 0.969 -0.462 1.082 sum 11.746 -14.952 -12.373 22.685 Atomic orbital electron populations 1.69832 1.06135 1.26917 1.49995 1.24835 0.94707 0.98558 0.94558 0.86663 0.80030 0.83291 0.78418 1.20460 1.21648 1.19167 1.20055 0.89375 0.91460 1.49805 1.19692 0.96561 0.95012 0.93915 1.21861 0.97236 0.95291 1.00681 1.21028 0.94385 0.89030 0.90455 0.90535 1.46423 1.23815 1.45754 1.21130 1.20468 0.80985 0.80449 0.87847 1.90672 1.58252 1.65160 1.28061 1.20709 0.97011 0.95079 0.94548 1.21545 0.97182 0.95907 0.99169 1.21038 0.97079 0.97207 0.94907 1.21560 0.99036 0.97173 0.96843 1.21028 0.95214 0.96088 0.97905 1.21556 0.96822 0.99297 0.96937 1.21101 0.98312 0.95712 0.95392 1.21555 0.95000 0.97095 1.00938 1.21326 0.94964 0.98621 0.97522 1.21528 1.01663 0.97327 0.93283 1.21927 0.92474 0.98526 1.02271 1.19343 0.98664 0.92800 0.91677 0.92615 0.95162 0.96279 0.94599 0.93138 0.77458 0.91430 0.91421 0.90992 0.91794 0.91967 0.90987 0.91919 0.92045 0.91091 0.92051 0.91928 0.91325 0.91321 0.91410 0.91403 0.92800 0.94688 0.92120 0.97590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.50 12.73 55.43 0.71 -24.80 16 2 C 0.08 2.07 5.46 -17.82 -0.10 1.98 16 3 Si 0.89 21.30 27.27 -169.99 -4.64 16.66 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.27 -6.29 6.46 56.52 0.37 -5.92 16 7 C -0.49 -12.88 5.51 -98.92 -0.55 -13.42 16 8 C -0.01 -0.33 5.59 -27.56 -0.15 -0.48 16 9 C -0.11 -2.38 5.49 -26.70 -0.15 -2.53 16 10 C 0.15 3.05 2.35 -67.97 -0.16 2.89 16 11 H 0.08 1.70 7.57 -51.93 -0.39 1.30 16 12 N -0.72 -11.53 4.86 -53.84 -0.26 -11.79 16 13 C 0.52 8.36 6.44 -10.98 -0.07 8.29 16 14 O -0.54 -11.06 15.64 5.56 0.09 -10.97 16 15 C -0.07 -0.83 0.61 -155.66 -0.10 -0.93 16 16 C -0.10 -1.02 4.37 -26.73 -0.12 -1.14 16 17 C -0.08 -0.70 3.20 -90.62 -0.29 -0.99 16 18 C -0.11 -0.84 5.19 -26.73 -0.14 -0.98 16 19 C -0.08 -0.71 3.19 -90.65 -0.29 -1.00 16 20 C -0.11 -0.90 5.19 -26.73 -0.14 -1.04 16 21 C -0.09 -0.78 3.20 -90.60 -0.29 -1.07 16 22 C -0.11 -0.88 5.19 -26.73 -0.14 -1.02 16 23 C -0.09 -1.02 3.77 -26.71 -0.10 -1.12 16 24 C -0.10 -1.05 4.37 -26.76 -0.12 -1.17 16 25 C -0.11 -2.32 5.40 -26.62 -0.14 -2.46 16 26 C 0.01 0.32 5.97 -27.47 -0.16 0.16 16 27 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 28 H 0.03 0.72 4.78 -51.93 -0.25 0.47 16 29 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.39 5.23 7.44 -40.82 -0.30 4.93 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.07 0.66 7.57 -51.92 -0.39 0.26 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 43 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.07 0.89 8.10 -51.93 -0.42 0.47 16 45 H 0.07 0.88 8.10 -51.93 -0.42 0.46 16 46 H 0.07 0.68 7.56 -51.93 -0.39 0.29 16 47 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 48 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 49 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 50 H 0.06 1.62 7.07 -51.93 -0.37 1.26 16 51 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 16 LS Contribution 366.59 15.07 5.52 5.52 Total: -1.00 -29.67 366.59 -11.07 -40.74 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -9.30 Total: 0.68 kcal Atomic # 6 Polarization: -12.85 SS G_CDS: -3.20 Total: -16.04 kcal Atomic # 7 Polarization: -37.03 SS G_CDS: 0.44 Total: -36.59 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: 0.09 Total: -10.97 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.64 Total: 16.66 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -29.67 -11.07 -40.74 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144767958.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.072 kcal (2) G-P(sol) polarization free energy of solvation -29.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds