Wall clock time and date at job start Tue Mar 31 2020 11:12:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00011 * 2 1 4 4 H 1.48499 * 109.47008 * 269.99848 * 3 2 1 5 5 H 1.48502 * 109.46908 * 30.00062 * 3 2 1 6 6 H 1.48501 * 109.46953 * 149.99763 * 3 2 1 7 7 C 1.37879 * 120.00179 * 180.02562 * 2 1 3 8 8 C 1.51273 * 120.85198 * 180.02562 * 7 2 1 9 9 C 1.53088 * 108.49534 * 231.33385 * 8 7 2 10 10 C 1.52965 * 109.47453 * 305.31351 * 9 8 7 11 11 H 1.09002 * 109.41499 * 303.56866 * 10 9 8 12 12 N 1.46499 * 109.41221 * 183.71053 * 10 9 8 13 13 C 1.34776 * 119.99963 * 84.85835 * 12 10 9 14 14 O 1.21275 * 120.00082 * 0.02562 * 13 12 10 15 15 C 1.50707 * 120.00043 * 179.97438 * 13 12 10 16 16 C 1.53000 * 109.46960 * 299.99919 * 15 13 12 17 17 C 1.53001 * 109.47073 * 179.97438 * 16 15 13 18 18 C 1.52998 * 109.47063 * 300.00569 * 17 16 15 19 19 C 1.53000 * 109.47272 * 59.99843 * 18 17 16 20 20 C 1.52995 * 109.46987 * 60.00156 * 19 18 17 21 21 C 1.53003 * 109.47139 * 299.99384 * 20 19 18 22 22 C 1.53000 * 109.46678 * 60.00427 * 21 20 19 23 23 C 1.52995 * 109.47052 * 180.02562 * 15 13 12 24 24 C 1.52994 * 109.46886 * 59.99917 * 15 13 12 25 25 C 1.52957 * 109.75768 * 63.63992 * 10 9 8 26 26 C 1.51272 * 120.84935 * 359.97438 * 7 2 1 27 27 H 0.97000 * 120.00271 * 0.02562 * 1 2 3 28 28 H 1.09007 * 109.62232 * 351.03883 * 8 7 2 29 29 H 1.08994 * 109.62759 * 111.41259 * 8 7 2 30 30 H 1.09004 * 109.38594 * 185.35385 * 9 8 7 31 31 H 1.08994 * 109.51013 * 65.35040 * 9 8 7 32 32 H 0.96998 * 120.00108 * 264.85878 * 12 10 9 33 33 H 1.09001 * 109.47537 * 300.00099 * 16 15 13 34 34 H 1.09008 * 109.46720 * 60.00342 * 16 15 13 35 35 H 1.08997 * 109.46997 * 180.02562 * 17 16 15 36 36 H 1.08996 * 109.47181 * 299.99446 * 18 17 16 37 37 H 1.09004 * 109.46925 * 180.02562 * 18 17 16 38 38 H 1.08997 * 109.46718 * 179.97438 * 19 18 17 39 39 H 1.08997 * 109.47122 * 180.02562 * 20 19 18 40 40 H 1.09001 * 109.47875 * 59.99886 * 20 19 18 41 41 H 1.09002 * 109.47212 * 180.02562 * 21 20 19 42 42 H 1.09001 * 109.47430 * 60.00329 * 22 21 20 43 43 H 1.09001 * 109.47168 * 180.02562 * 22 21 20 44 44 H 1.08997 * 109.47267 * 299.99981 * 23 15 13 45 45 H 1.08997 * 109.47584 * 59.99719 * 23 15 13 46 46 H 1.08996 * 109.47446 * 299.99924 * 24 15 13 47 47 H 1.08997 * 109.47356 * 60.00292 * 24 15 13 48 48 H 1.09005 * 109.48472 * 56.42044 * 25 10 9 49 49 H 1.09002 * 109.48201 * 176.45458 * 25 10 9 50 50 H 1.09000 * 109.62600 * 8.95852 * 26 7 2 51 51 H 1.09004 * 109.62497 * 248.39200 * 26 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 6 3.5171 -1.2165 0.0000 9 6 3.9897 -2.1299 -1.1340 10 6 3.3403 -3.5067 -0.9840 11 1 3.5740 -3.9123 0.0004 12 7 3.8609 -4.4057 -2.0170 13 6 5.0169 -5.0680 -1.8138 14 8 5.6261 -4.9202 -0.7756 15 6 5.5521 -5.9932 -2.8763 16 6 4.5334 -7.1022 -3.1470 17 6 5.0765 -8.0412 -4.2261 18 6 5.3240 -7.2507 -5.5124 19 6 6.3427 -6.1418 -5.2416 20 6 7.6569 -6.7622 -4.7635 21 6 7.4094 -7.5526 -3.4770 22 6 6.3907 -8.6616 -3.7478 23 6 6.8658 -6.6140 -2.3972 24 6 5.7999 -5.2032 -4.1628 25 6 1.8234 -3.3823 -1.1356 26 6 1.2677 -2.5152 -0.0005 27 1 -0.4850 0.8400 -0.0004 28 1 3.8983 -0.2077 -0.1591 29 1 3.8773 -1.5973 0.9557 30 1 5.0739 -2.2324 -1.0880 31 1 3.7056 -1.6965 -2.0928 32 1 3.3735 -4.5242 -2.8473 33 1 4.3568 -7.6651 -2.2304 34 1 3.5972 -6.6602 -3.4881 35 1 4.3506 -8.8310 -4.4193 36 1 4.3877 -6.8088 -5.8531 37 1 5.7104 -7.9198 -6.2813 38 1 6.5193 -5.5790 -6.1582 39 1 8.3825 -5.9722 -4.5701 40 1 8.0439 -7.4312 -5.5321 41 1 8.3459 -7.9943 -3.1361 42 1 6.7776 -9.3306 -4.5165 43 1 6.2141 -9.2244 -2.8312 44 1 7.5918 -5.8243 -2.2040 45 1 6.6889 -7.1769 -1.4808 46 1 4.8638 -4.7612 -4.5038 47 1 6.5257 -4.4131 -3.9699 48 1 1.5906 -2.9192 -2.0946 49 1 1.3711 -4.3730 -1.0909 50 1 0.2036 -2.3409 -0.1600 51 1 1.4200 -3.0193 0.9539 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001144767958.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:36 Heat of formation + Delta-G solvation = -105.285813 kcal Electronic energy + Delta-G solvation = -28473.240954 eV Core-core repulsion = 24947.588793 eV Total energy + Delta-G solvation = -3525.652161 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.71053 -40.39857 -38.40240 -35.45613 -34.14635 -33.51799 -33.45989 -32.94925 -31.51177 -29.04602 -26.85548 -26.74272 -24.86353 -23.46637 -23.18767 -22.33628 -22.25899 -21.30038 -20.72802 -18.75095 -18.12876 -17.40827 -17.10733 -16.43071 -15.92685 -15.68189 -15.34782 -15.33873 -15.27836 -14.98137 -14.58345 -14.29046 -14.23153 -14.19504 -14.15035 -13.91227 -13.82572 -13.46610 -13.31115 -13.27490 -12.81214 -12.70675 -12.57415 -11.96689 -11.87963 -11.85841 -11.80683 -11.79259 -11.73522 -11.72937 -11.52862 -11.41855 -10.97529 -10.72934 -10.56798 -10.54725 -10.53217 -10.28672 -9.88318 -8.19263 -6.13408 1.36050 1.40287 1.48853 1.68967 2.26255 2.39346 3.08990 3.47345 3.54028 3.58402 3.97143 4.05600 4.12930 4.17931 4.23226 4.27749 4.28683 4.31239 4.32415 4.44881 4.45357 4.46739 4.67694 4.73047 4.79897 4.83258 4.84261 4.86274 4.93630 4.99308 5.04639 5.11800 5.13387 5.13849 5.17375 5.18245 5.19292 5.21427 5.21674 5.26227 5.29253 5.50311 5.51872 5.56499 5.57716 5.61217 5.62928 5.68775 5.74004 5.79896 6.33067 6.66290 6.91649 7.33781 7.44890 8.91373 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.026572 B = 0.003188 C = 0.003125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.487478 B = 8781.447613 C = 8958.596875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.027 3.973 3 Si 0.938 3.062 4 H -0.269 1.269 5 H -0.290 1.290 6 H -0.262 1.262 7 C -0.500 4.500 8 C -0.015 4.015 9 C -0.104 4.104 10 C 0.166 3.834 11 H 0.050 0.950 12 N -0.711 5.711 13 C 0.513 3.487 14 O -0.590 6.590 15 C -0.061 4.061 16 C -0.100 4.100 17 C -0.081 4.081 18 C -0.106 4.106 19 C -0.081 4.081 20 C -0.108 4.108 21 C -0.083 4.083 22 C -0.108 4.108 23 C -0.087 4.087 24 C -0.100 4.100 25 C -0.099 4.099 26 C 0.009 3.991 27 H 0.264 0.736 28 H 0.032 0.968 29 H 0.009 0.991 30 H 0.035 0.965 31 H 0.057 0.943 32 H 0.409 0.591 33 H 0.055 0.945 34 H 0.076 0.924 35 H 0.087 0.913 36 H 0.070 0.930 37 H 0.080 0.920 38 H 0.085 0.915 39 H 0.055 0.945 40 H 0.081 0.919 41 H 0.076 0.924 42 H 0.081 0.919 43 H 0.057 0.943 44 H 0.047 0.953 45 H 0.049 0.951 46 H 0.075 0.925 47 H 0.052 0.948 48 H 0.058 0.942 49 H 0.058 0.942 50 H 0.035 0.965 51 H -0.005 1.005 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.331 -17.569 -15.619 26.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.172 4.172 3 Si 0.765 3.235 4 H -0.195 1.195 5 H -0.216 1.216 6 H -0.186 1.186 7 C -0.519 4.519 8 C -0.053 4.053 9 C -0.142 4.142 10 C 0.061 3.939 11 H 0.069 0.931 12 N -0.361 5.361 13 C 0.301 3.699 14 O -0.471 6.471 15 C -0.064 4.064 16 C -0.138 4.138 17 C -0.099 4.099 18 C -0.143 4.143 19 C -0.099 4.099 20 C -0.145 4.145 21 C -0.102 4.102 22 C -0.145 4.145 23 C -0.125 4.125 24 C -0.138 4.138 25 C -0.137 4.137 26 C -0.029 4.029 27 H 0.073 0.927 28 H 0.050 0.950 29 H 0.027 0.973 30 H 0.054 0.946 31 H 0.076 0.924 32 H 0.245 0.755 33 H 0.073 0.927 34 H 0.094 0.906 35 H 0.105 0.895 36 H 0.088 0.912 37 H 0.098 0.902 38 H 0.104 0.896 39 H 0.074 0.926 40 H 0.100 0.900 41 H 0.095 0.905 42 H 0.100 0.900 43 H 0.075 0.925 44 H 0.066 0.934 45 H 0.068 0.932 46 H 0.093 0.907 47 H 0.071 0.929 48 H 0.077 0.923 49 H 0.077 0.923 50 H 0.054 0.946 51 H 0.013 0.987 Dipole moment (debyes) X Y Z Total from point charges 12.588 -17.347 -14.884 26.094 hybrid contribution -0.163 1.375 0.556 1.492 sum 12.425 -15.971 -14.328 24.794 Atomic orbital electron populations 1.69945 1.07443 1.27556 1.51696 1.25538 0.95352 1.01542 0.94730 0.85841 0.79017 0.79862 0.78813 1.19476 1.21635 1.18642 1.20562 0.90652 0.92084 1.48636 1.19691 0.95248 0.95820 0.94580 1.21733 0.97205 0.95567 0.99741 1.20603 0.93919 0.88866 0.90476 0.93131 1.46157 1.24024 1.44951 1.20931 1.21335 0.80219 0.80215 0.88137 1.90652 1.59464 1.66638 1.30298 1.20686 0.97263 0.94804 0.93635 1.21586 0.97022 0.95562 0.99648 1.21058 0.97335 0.97125 0.94391 1.21570 0.99089 0.96947 0.96711 1.21046 0.95395 0.96097 0.97391 1.21570 0.96764 0.99371 0.96832 1.21093 0.98784 0.95486 0.94788 1.21569 0.94677 0.96835 1.01410 1.21318 0.94649 0.98458 0.98072 1.21564 1.01823 0.97359 0.93072 1.21692 0.92699 0.98878 1.00476 1.19303 0.97369 0.93348 0.92894 0.92654 0.94973 0.97284 0.94606 0.92404 0.75466 0.92668 0.90552 0.89451 0.91161 0.90169 0.89625 0.92625 0.90018 0.90520 0.90040 0.92470 0.93439 0.93243 0.90653 0.92916 0.92289 0.92338 0.94607 0.98694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.98 12.73 21.45 0.27 -53.70 16 2 C 0.03 1.49 5.46 84.66 0.46 1.95 16 3 Si 0.94 43.71 27.27 68.60 1.87 45.58 16 4 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 5 H -0.29 -13.41 7.11 99.48 0.71 -12.71 16 6 H -0.26 -11.86 6.46 99.48 0.64 -11.21 16 7 C -0.50 -26.67 5.51 -16.17 -0.09 -26.76 16 8 C -0.02 -0.74 5.59 30.06 0.17 -0.57 16 9 C -0.10 -4.37 5.49 30.61 0.17 -4.20 16 10 C 0.17 6.52 2.35 44.97 0.11 6.62 16 11 H 0.05 2.28 7.57 -2.39 -0.02 2.26 16 12 N -0.71 -21.99 4.86 -442.66 -2.15 -24.14 16 13 C 0.51 16.55 6.44 87.66 0.56 17.11 16 14 O -0.59 -24.70 15.64 -3.02 -0.05 -24.74 16 15 C -0.06 -1.39 0.61 -52.93 -0.03 -1.42 16 16 C -0.10 -1.84 4.37 30.59 0.13 -1.71 16 17 C -0.08 -1.06 3.20 -10.79 -0.03 -1.10 16 18 C -0.11 -1.18 5.19 30.59 0.16 -1.02 16 19 C -0.08 -1.10 3.19 -10.81 -0.03 -1.14 16 20 C -0.11 -1.48 5.19 30.59 0.16 -1.32 16 21 C -0.08 -1.34 3.20 -10.78 -0.03 -1.37 16 22 C -0.11 -1.43 5.19 30.59 0.16 -1.27 16 23 C -0.09 -2.04 3.77 30.61 0.12 -1.93 16 24 C -0.10 -1.91 4.37 30.58 0.13 -1.77 16 25 C -0.10 -3.98 5.40 30.67 0.17 -3.82 16 26 C 0.01 0.44 5.97 30.12 0.18 0.62 16 27 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 28 H 0.03 1.51 4.78 -2.38 -0.01 1.50 16 29 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.04 1.50 8.14 -2.38 -0.02 1.48 16 31 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 32 H 0.41 10.02 7.44 -92.71 -0.69 9.33 16 33 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.08 1.27 7.57 -2.38 -0.02 1.25 16 35 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.08 0.68 8.14 -2.38 -0.02 0.66 16 38 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 43 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.05 1.28 8.10 -2.39 -0.02 1.26 16 45 H 0.05 1.32 8.10 -2.39 -0.02 1.30 16 46 H 0.07 1.31 7.56 -2.39 -0.02 1.29 16 47 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 48 H 0.06 2.32 8.14 -2.38 -0.02 2.30 16 49 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 50 H 0.04 1.96 7.07 -2.39 -0.02 1.94 16 51 H -0.01 -0.28 8.14 -2.38 -0.02 -0.30 16 Total: -1.00 -65.70 366.59 2.54 -63.16 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: 0.15 Total: 16.94 kcal Atomic # 6 Polarization: -25.54 SS G_CDS: 2.45 Total: -23.09 kcal Atomic # 7 Polarization: -75.96 SS G_CDS: -1.88 Total: -77.84 kcal Atomic # 8 Polarization: -24.70 SS G_CDS: -0.05 Total: -24.74 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 1.87 Total: 45.58 kcal Total: -65.70 2.54 -63.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144767958.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.127 kcal (2) G-P(sol) polarization free energy of solvation -65.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds