Wall clock time and date at job start Tue Mar 31 2020 11:23:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42897 * 114.00046 * 2 1 4 4 C 1.52996 * 109.47429 * 183.75405 * 3 2 1 5 5 N 1.46904 * 109.46587 * 63.48964 * 4 3 2 6 6 C 1.46901 * 111.00271 * 72.43805 * 5 4 3 7 7 C 1.50696 * 109.46918 * 192.14401 * 6 5 4 8 8 C 1.38266 * 119.99649 * 257.86697 * 7 6 5 9 9 C 1.38215 * 119.99861 * 179.74583 * 8 7 6 10 10 C 1.38259 * 120.00009 * 0.52604 * 9 8 7 11 11 C 1.50697 * 119.99866 * 179.76457 * 10 9 8 12 12 C 1.38217 * 119.99920 * 359.75406 * 10 9 8 13 13 C 1.38208 * 120.00388 * 78.14303 * 7 6 5 14 14 C 1.50700 * 120.00202 * 359.97438 * 13 7 6 15 15 C 1.46904 * 110.99821 * 196.39376 * 5 4 3 16 16 C 1.53001 * 109.47564 * 66.10282 * 15 5 4 17 17 C 1.50697 * 115.54513 * 54.52981 * 16 15 5 18 18 H 1.07993 * 120.00405 * 244.08782 * 17 16 15 19 19 C 1.37881 * 119.99841 * 64.09798 * 17 16 15 20 20 N 1.31519 * 120.00008 * 200.60651 * 19 17 16 21 21 Si 1.86797 * 120.00316 * 20.60386 * 19 17 16 22 22 H 1.48510 * 109.46917 * 275.81611 * 21 19 17 23 23 H 1.48500 * 109.47205 * 35.81459 * 21 19 17 24 24 H 1.48501 * 109.47327 * 155.81590 * 21 19 17 25 25 C 1.52996 * 117.49805 * 200.20001 * 16 15 5 26 26 C 1.52993 * 117.49908 * 268.86554 * 16 15 5 27 27 H 1.09001 * 109.47225 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.47042 * 299.99202 * 1 2 3 29 29 H 1.08994 * 109.47624 * 59.99391 * 1 2 3 30 30 H 1.09008 * 109.46724 * 63.76063 * 3 2 1 31 31 H 1.09005 * 109.47303 * 303.76313 * 3 2 1 32 32 H 1.08994 * 109.47232 * 303.48937 * 4 3 2 33 33 H 1.08996 * 109.47352 * 183.48057 * 4 3 2 34 34 H 1.09006 * 109.46512 * 312.13923 * 6 5 4 35 35 H 1.08997 * 109.47015 * 72.14030 * 6 5 4 36 36 H 1.07998 * 120.00093 * 359.97438 * 8 7 6 37 37 H 1.08000 * 119.99697 * 180.29693 * 9 8 7 38 38 H 1.08997 * 109.47660 * 269.98221 * 11 10 9 39 39 H 1.08994 * 109.46970 * 29.98656 * 11 10 9 40 40 H 1.09001 * 109.46594 * 149.97958 * 11 10 9 41 41 H 1.07995 * 119.99760 * 180.02562 * 12 10 9 42 42 H 1.08999 * 109.46475 * 93.53799 * 14 13 7 43 43 H 1.09001 * 109.47422 * 213.54025 * 14 13 7 44 44 H 1.09001 * 109.46712 * 333.54076 * 14 13 7 45 45 H 1.09003 * 109.46607 * 306.10362 * 15 5 4 46 46 H 1.09001 * 109.46963 * 186.10747 * 15 5 4 47 47 H 0.97000 * 120.00204 * 179.97438 * 20 19 17 48 48 H 1.08997 * 117.49546 * 215.00199 * 25 16 15 49 49 H 1.08997 * 117.50397 * 0.02916 * 25 16 15 50 50 H 1.08999 * 117.50074 * 359.97085 * 26 16 15 51 51 H 1.08999 * 117.49810 * 144.97803 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5326 1.1860 -0.0944 5 7 3.8964 0.5646 -1.3749 6 6 3.6844 1.4959 -2.4911 7 6 3.7776 0.7464 -3.7951 8 6 4.9267 0.8294 -4.5596 9 6 5.0141 0.1379 -5.7531 10 6 3.9485 -0.6282 -6.1879 11 6 4.0419 -1.3780 -7.4917 12 6 2.7976 -0.7065 -5.4265 13 6 2.7123 -0.0193 -4.2298 14 6 1.4576 -0.1053 -3.3994 15 6 5.2829 0.0799 -1.3497 16 6 5.4045 -1.0659 -0.3430 17 6 4.4486 -2.2131 -0.5456 18 1 3.7051 -2.4356 0.2054 19 6 4.5233 -2.9789 -1.6898 20 7 3.4869 -3.6924 -2.0724 21 14 6.0966 -3.0030 -2.6965 22 1 6.1094 -1.8423 -3.6228 23 1 7.2677 -2.9233 -1.7868 24 1 6.1636 -4.2626 -3.4803 25 6 6.8014 -1.3954 0.1868 26 6 5.7808 -0.7054 1.0954 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 1.7429 1.8221 0.9219 31 1 1.6362 1.8697 -0.8544 32 1 3.9003 0.5697 0.7259 33 1 3.9795 2.1781 -0.0322 34 1 2.6975 1.9502 -2.4027 35 1 4.4466 2.2746 -2.4642 36 1 5.7573 1.4317 -4.2224 37 1 5.9135 0.1989 -6.3479 38 1 3.6809 -0.7444 -8.3019 39 1 5.0799 -1.6520 -7.6797 40 1 3.4323 -2.2799 -7.4366 41 1 1.9653 -1.3053 -5.7659 42 1 0.7464 0.6487 -3.7367 43 1 1.0164 -1.0959 -3.5091 44 1 1.7028 0.0693 -2.3517 45 1 5.9468 0.8932 -1.0565 46 1 5.5612 -0.2767 -2.3415 47 1 3.5393 -4.2309 -2.8775 48 1 7.0290 -2.4420 0.3890 49 1 7.6338 -0.7956 -0.1813 50 1 5.9421 0.3479 1.3246 51 1 5.3367 -1.2980 1.8953 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167227314.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:46 Heat of formation + Delta-G solvation = -1.975855 kcal Electronic energy + Delta-G solvation = -29259.736027 eV Core-core repulsion = 25738.563722 eV Total energy + Delta-G solvation = -3521.172305 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.81232 -39.43988 -38.36564 -36.75386 -34.33714 -33.97387 -32.95523 -30.82241 -29.40215 -27.92378 -27.72991 -26.96666 -26.13599 -24.55308 -23.17089 -22.89574 -21.92760 -20.82162 -20.56408 -18.21097 -17.39340 -17.11178 -16.82199 -16.62121 -16.32221 -16.12875 -15.75102 -15.49560 -15.23302 -14.97442 -14.79576 -14.64234 -14.44286 -13.95415 -13.83810 -13.72644 -13.44982 -13.30289 -13.21797 -12.94020 -12.81937 -12.67192 -12.65431 -12.54684 -12.25126 -12.16248 -12.04369 -11.95054 -11.73633 -11.55842 -11.48248 -11.23704 -10.77776 -10.33106 -10.20778 -10.05802 -9.53159 -9.20598 -8.72455 -8.05397 -5.92353 0.50771 0.59826 1.40784 1.44179 1.52420 2.54941 2.76839 3.09751 3.19446 3.39388 3.55038 3.93455 3.95338 4.09210 4.17620 4.19801 4.28958 4.35347 4.40577 4.47088 4.49124 4.55019 4.59707 4.61691 4.62874 4.67854 4.71807 4.75054 4.76945 4.80080 4.86641 4.87203 4.91651 4.93511 4.96956 5.01220 5.04090 5.15948 5.20383 5.28420 5.36134 5.53471 5.57941 5.59034 5.65774 5.74721 5.92410 5.95234 6.25367 6.43833 6.50481 6.63468 6.72258 7.02874 7.65975 9.10416 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.010019 B = 0.007502 C = 0.005756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2794.036927 B = 3731.259620 C = 4863.675245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.389 6.389 3 C 0.068 3.932 4 C 0.051 3.949 5 N -0.510 5.510 6 C 0.095 3.905 7 C -0.090 4.090 8 C -0.119 4.119 9 C -0.145 4.145 10 C -0.101 4.101 11 C -0.108 4.108 12 C -0.144 4.144 13 C -0.058 4.058 14 C -0.116 4.116 15 C 0.101 3.899 16 C -0.005 4.005 17 C -0.440 4.440 18 H 0.023 0.977 19 C 0.053 3.947 20 N -0.926 5.926 21 Si 0.896 3.104 22 H -0.264 1.264 23 H -0.245 1.245 24 H -0.315 1.315 25 C -0.202 4.202 26 C -0.166 4.166 27 H 0.068 0.932 28 H 0.052 0.948 29 H 0.045 0.955 30 H 0.064 0.936 31 H 0.052 0.948 32 H 0.078 0.922 33 H 0.063 0.937 34 H 0.089 0.911 35 H 0.047 0.953 36 H 0.129 0.871 37 H 0.135 0.865 38 H 0.088 0.912 39 H 0.070 0.930 40 H 0.062 0.938 41 H 0.118 0.882 42 H 0.075 0.925 43 H 0.039 0.961 44 H 0.095 0.905 45 H 0.027 0.973 46 H 0.051 0.949 47 H 0.251 0.749 48 H 0.069 0.931 49 H 0.088 0.912 50 H 0.099 0.901 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.884 14.358 -3.845 14.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.308 6.308 3 C -0.009 4.009 4 C -0.076 4.076 5 N -0.233 5.233 6 C -0.031 4.031 7 C -0.091 4.091 8 C -0.138 4.138 9 C -0.163 4.163 10 C -0.101 4.101 11 C -0.165 4.165 12 C -0.162 4.162 13 C -0.059 4.059 14 C -0.172 4.172 15 C -0.026 4.026 16 C -0.006 4.006 17 C -0.477 4.477 18 H 0.041 0.959 19 C -0.145 4.145 20 N -0.565 5.565 21 Si 0.724 3.276 22 H -0.189 1.189 23 H -0.168 1.168 24 H -0.243 1.243 25 C -0.240 4.240 26 C -0.203 4.203 27 H 0.087 0.913 28 H 0.070 0.930 29 H 0.064 0.936 30 H 0.082 0.918 31 H 0.070 0.930 32 H 0.096 0.904 33 H 0.080 0.920 34 H 0.107 0.893 35 H 0.065 0.935 36 H 0.147 0.853 37 H 0.152 0.848 38 H 0.107 0.893 39 H 0.089 0.911 40 H 0.081 0.919 41 H 0.136 0.864 42 H 0.093 0.907 43 H 0.058 0.942 44 H 0.114 0.886 45 H 0.045 0.955 46 H 0.070 0.930 47 H 0.060 0.940 48 H 0.087 0.913 49 H 0.107 0.893 50 H 0.117 0.883 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.156 13.675 -4.020 14.301 hybrid contribution 0.769 -0.141 -0.435 0.895 sum -0.387 13.534 -4.455 14.254 Atomic orbital electron populations 1.22747 0.81496 1.02179 1.00230 1.88244 1.19476 1.27985 1.95087 1.22631 0.93412 0.84823 1.00032 1.22258 0.94694 0.97884 0.92777 1.61538 1.23190 1.36652 1.01944 1.21084 1.01762 0.92337 0.87965 1.19756 0.93813 0.99360 0.96149 1.21206 0.97236 1.00214 0.95126 1.21151 0.98908 0.98817 0.97422 1.20195 0.93881 0.98113 0.97960 1.20784 1.02936 0.99393 0.93351 1.21089 0.98545 1.01038 0.95539 1.19904 0.96726 0.95114 0.94128 1.20890 0.93963 1.00536 1.01858 1.21632 0.87906 0.94515 0.98580 1.19297 0.93198 0.95618 0.92476 1.19900 1.13557 1.10950 1.03291 0.95876 1.25166 0.96806 0.95617 0.96934 1.70183 1.29892 1.32289 1.24161 0.86540 0.84783 0.76366 0.79949 1.18903 1.16826 1.24296 1.23109 0.93957 0.99815 1.07144 1.22809 1.03678 0.99616 0.94173 0.91292 0.92953 0.93621 0.91776 0.92991 0.90389 0.91965 0.89325 0.93526 0.85325 0.84757 0.89334 0.91122 0.91922 0.86398 0.90679 0.94225 0.88642 0.95492 0.93030 0.94043 0.91274 0.89327 0.88259 0.90998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.87 11.01 113.37 1.25 2.12 16 2 O -0.39 -14.67 9.38 -148.98 -1.40 -16.07 16 3 C 0.07 1.98 5.46 71.98 0.39 2.37 16 4 C 0.05 1.64 5.22 86.30 0.45 2.09 16 5 N -0.51 -19.11 3.28 -900.79 -2.95 -22.06 16 6 C 0.10 3.05 4.06 85.56 0.35 3.40 16 7 C -0.09 -3.26 4.61 -19.87 -0.09 -3.35 16 8 C -0.12 -4.05 8.65 22.27 0.19 -3.86 16 9 C -0.15 -4.77 9.70 22.27 0.22 -4.56 16 10 C -0.10 -3.41 5.88 -19.87 -0.12 -3.53 16 11 C -0.11 -2.80 10.01 71.23 0.71 -2.09 16 12 C -0.14 -5.34 9.37 22.27 0.21 -5.13 16 13 C -0.06 -2.24 5.88 -19.87 -0.12 -2.35 16 14 C -0.12 -4.28 9.37 71.24 0.67 -3.62 16 15 C 0.10 4.10 4.46 86.30 0.39 4.49 16 16 C 0.00 -0.21 0.49 -52.93 -0.03 -0.23 16 17 C -0.44 -25.01 8.98 25.60 0.23 -24.78 16 18 H 0.02 1.51 8.06 -2.91 -0.02 1.49 16 19 C 0.05 3.13 5.41 84.65 0.46 3.59 16 20 N -0.93 -58.86 13.96 21.45 0.30 -58.56 16 21 Si 0.90 46.05 25.72 68.60 1.76 47.81 16 22 H -0.26 -13.21 6.57 99.48 0.65 -12.56 16 23 H -0.24 -11.70 5.90 99.48 0.59 -11.11 16 24 H -0.31 -16.76 7.11 99.48 0.71 -16.06 16 25 C -0.20 -8.30 7.90 30.62 0.24 -8.06 16 26 C -0.17 -6.40 8.08 30.62 0.25 -6.15 16 27 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 28 H 0.05 1.22 8.14 -2.38 -0.02 1.20 16 29 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.06 1.52 8.14 -2.38 -0.02 1.50 16 31 H 0.05 1.35 6.39 -2.38 -0.02 1.33 16 32 H 0.08 2.82 5.13 -2.39 -0.01 2.81 16 33 H 0.06 1.58 8.05 -2.39 -0.02 1.56 16 34 H 0.09 2.54 5.53 -2.38 -0.01 2.53 16 35 H 0.05 1.29 7.94 -2.39 -0.02 1.27 16 36 H 0.13 3.77 8.02 -2.91 -0.02 3.74 16 37 H 0.13 3.66 8.06 -2.91 -0.02 3.63 16 38 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.07 1.68 8.08 -2.39 -0.02 1.66 16 40 H 0.06 1.63 8.09 -2.39 -0.02 1.61 16 41 H 0.12 4.10 8.06 -2.91 -0.02 4.07 16 42 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 43 H 0.04 1.60 8.11 -2.39 -0.02 1.58 16 44 H 0.09 3.75 3.97 -2.39 -0.01 3.74 16 45 H 0.03 0.95 8.07 -2.39 -0.02 0.93 16 46 H 0.05 2.30 3.96 -2.39 -0.01 2.29 16 47 H 0.25 15.46 8.31 -92.71 -0.77 14.69 16 48 H 0.07 3.05 7.90 -2.39 -0.02 3.03 16 49 H 0.09 3.19 8.14 -2.39 -0.02 3.17 16 50 H 0.10 3.18 7.91 -2.39 -0.02 3.16 16 51 H 0.07 2.92 8.14 -2.39 -0.02 2.90 16 Total: -1.00 -71.13 391.21 4.08 -67.05 By element: Atomic # 1 Polarization: 30.78 SS G_CDS: 0.71 Total: 31.49 kcal Atomic # 6 Polarization: -55.32 SS G_CDS: 5.65 Total: -49.67 kcal Atomic # 7 Polarization: -77.97 SS G_CDS: -2.65 Total: -80.62 kcal Atomic # 8 Polarization: -14.67 SS G_CDS: -1.40 Total: -16.07 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 1.76 Total: 47.81 kcal Total: -71.13 4.08 -67.05 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167227314.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.076 kcal (2) G-P(sol) polarization free energy of solvation -71.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds