Wall clock time and date at job start Tue Mar 31 2020 11:35:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38266 * 119.91876 * 2 1 4 4 C 1.38686 * 119.97833 * 179.74426 * 3 2 1 5 5 N 1.39959 * 120.09100 * 180.27347 * 4 3 2 6 6 C 1.46504 * 120.00004 * 0.27756 * 5 4 3 7 7 H 1.08997 * 109.41172 * 324.99639 * 6 5 4 8 8 C 1.52962 * 109.41049 * 84.85626 * 6 5 4 9 9 C 1.53246 * 109.39490 * 183.77147 * 8 6 5 10 10 C 1.51265 * 108.48764 * 305.27010 * 9 8 6 11 11 C 1.37877 * 120.84736 * 231.36764 * 10 9 8 12 12 N 1.31512 * 119.99838 * 180.02562 * 11 10 9 13 13 Si 1.86798 * 120.00091 * 0.02562 * 11 10 9 14 14 H 1.48502 * 109.47209 * 59.99963 * 13 11 10 15 15 H 1.48502 * 109.47162 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.46939 * 300.00056 * 13 11 10 17 17 C 1.51265 * 118.30169 * 51.38144 * 10 9 8 18 18 C 1.52959 * 109.41166 * 205.13541 * 6 5 4 19 19 C 1.39359 * 119.82089 * 0.55070 * 4 3 2 20 20 O 1.36014 * 120.08048 * 179.74454 * 19 4 3 21 21 C 1.42901 * 116.99666 * 185.14377 * 20 19 4 22 22 C 1.52996 * 109.47125 * 275.13534 * 21 20 19 23 23 C 1.53000 * 109.46681 * 155.13589 * 21 20 19 24 24 C 1.38465 * 119.83973 * 359.47384 * 19 4 3 25 25 C 1.38208 * 119.92014 * 180.02562 * 2 1 3 26 26 C 1.50703 * 119.91123 * 359.97438 * 25 2 1 27 27 H 1.08997 * 109.46866 * 269.97971 * 1 2 3 28 28 H 1.08999 * 109.46917 * 29.97644 * 1 2 3 29 29 H 1.08997 * 109.47210 * 149.97864 * 1 2 3 30 30 H 1.08004 * 120.01065 * 0.04021 * 3 2 1 31 31 H 0.97001 * 120.00306 * 180.27381 * 5 4 3 32 32 H 1.08997 * 109.48715 * 303.68392 * 8 6 5 33 33 H 1.09003 * 109.48037 * 63.72992 * 8 6 5 34 34 H 1.09000 * 109.61772 * 185.58536 * 9 8 6 35 35 H 1.08998 * 109.83850 * 65.08320 * 9 8 6 36 36 H 0.97006 * 120.00000 * 180.02562 * 12 11 10 37 37 H 1.08994 * 109.62751 * 188.93657 * 17 10 9 38 38 H 1.09005 * 109.61957 * 68.37217 * 17 10 9 39 39 H 1.08996 * 109.49071 * 296.27672 * 18 6 5 40 40 H 1.09003 * 109.48293 * 56.32353 * 18 6 5 41 41 H 1.08998 * 109.47410 * 35.13744 * 21 20 19 42 42 H 1.08997 * 109.47128 * 299.99815 * 22 21 20 43 43 H 1.08999 * 109.47398 * 60.00473 * 22 21 20 44 44 H 1.09000 * 109.47115 * 180.02562 * 22 21 20 45 45 H 1.09000 * 109.46981 * 179.97438 * 23 21 20 46 46 H 1.08995 * 109.47195 * 299.99920 * 23 21 20 47 47 H 1.08997 * 109.47535 * 60.00207 * 23 21 20 48 48 H 1.07993 * 119.99517 * 180.25323 * 24 19 4 49 49 H 1.08999 * 109.46885 * 269.97714 * 26 25 2 50 50 H 1.09004 * 109.46697 * 29.97264 * 26 25 2 51 51 H 1.08996 * 109.47288 * 149.97321 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1967 1.1984 0.0000 4 6 3.5835 1.1998 0.0054 5 7 4.2839 2.4115 0.0112 6 6 3.5521 3.6807 0.0177 7 1 2.6415 3.5768 -0.5722 8 6 3.1866 4.0493 1.4565 9 6 2.3405 5.3270 1.4553 10 6 3.0985 6.4036 0.7107 11 6 3.2983 7.6459 1.2742 12 7 3.9594 8.5698 0.6118 13 14 2.6299 8.0168 2.9787 14 1 3.2286 7.0771 3.9604 15 1 2.9758 9.4116 3.3533 16 1 1.1536 7.8568 2.9770 17 6 3.6315 6.0824 -0.6680 18 6 4.4294 4.7765 -0.5899 19 6 4.2778 -0.0084 -0.0009 20 8 5.6379 -0.0132 -0.0009 21 6 6.2822 -1.2830 -0.1216 22 6 6.3965 -1.9303 1.2599 23 6 7.6806 -1.0911 -0.7122 24 6 3.5797 -1.2042 -0.0014 25 6 2.1964 -1.1979 -0.0005 26 6 1.4390 -2.5008 -0.0005 27 1 -0.3633 -0.0004 1.0277 28 1 -0.3633 0.8902 -0.5135 29 1 -0.3633 -0.8898 -0.5141 30 1 1.6555 2.1331 0.0007 31 1 5.2540 2.4111 0.0109 32 1 2.6158 3.2369 1.9062 33 1 4.0974 4.2158 2.0317 34 1 2.1613 5.6483 2.4813 35 1 1.3883 5.1396 0.9588 36 1 4.1003 9.4438 1.0084 37 1 4.2818 6.8891 -1.0062 38 1 2.8003 5.9627 -1.3630 39 1 5.3101 4.9254 0.0347 40 1 4.7399 4.4799 -1.5918 41 1 5.6961 -1.9269 -0.7773 42 1 6.9827 -1.2863 1.9155 43 1 5.4003 -2.0669 1.6807 44 1 6.8883 -2.8986 1.1679 45 1 8.1722 -2.0596 -0.8039 46 1 7.5991 -0.6300 -1.6964 47 1 8.2667 -0.4472 -0.0566 48 1 4.1152 -2.1420 -0.0021 49 1 1.2572 -2.8153 1.0271 50 1 0.4866 -2.3673 -0.5136 51 1 2.0254 -3.2619 -0.5152 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167846240.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:35:15 Heat of formation + Delta-G solvation = -43.036470 kcal Electronic energy + Delta-G solvation = -27483.833349 eV Core-core repulsion = 23960.880522 eV Total energy + Delta-G solvation = -3522.952827 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.32875 -38.23267 -37.32093 -34.74429 -33.21123 -31.98374 -31.47593 -30.52509 -29.59725 -27.63497 -27.26380 -26.66187 -24.96791 -22.97824 -21.96352 -21.45466 -20.55185 -20.26780 -19.29686 -17.80195 -16.68330 -15.92911 -15.67341 -15.40973 -14.61419 -14.53970 -14.37330 -14.18525 -13.91584 -13.65796 -13.33031 -13.28552 -12.88194 -12.76488 -12.68633 -12.55840 -12.44534 -12.27416 -12.06298 -11.96999 -11.84217 -11.71673 -11.47843 -11.21441 -11.00631 -10.98415 -10.87634 -10.71853 -10.51215 -10.45013 -10.12211 -9.99447 -9.78068 -9.33743 -8.93886 -8.64195 -8.47521 -8.09730 -6.66761 -6.10581 -4.01400 1.65173 1.83234 3.28501 3.29473 3.35907 3.37495 3.98168 4.03668 4.38718 4.64734 4.77357 4.89981 5.00759 5.04147 5.15808 5.17379 5.30155 5.34196 5.42408 5.54002 5.56538 5.58674 5.60047 5.70988 5.77778 5.79655 5.89321 5.91499 5.94792 5.96257 6.00781 6.08058 6.14207 6.23856 6.42378 6.50422 6.55939 6.65160 6.75592 6.85603 6.89721 6.96608 7.03670 7.08825 7.11162 7.40853 7.51002 7.64109 7.71378 7.80970 7.97860 8.30729 8.38223 8.95982 9.54293 10.99145 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.013942 B = 0.003624 C = 0.003135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.872651 B = 7723.717290 C = 8930.373608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.070 4.070 3 C -0.171 4.171 4 C 0.212 3.788 5 N -0.735 5.735 6 C 0.162 3.838 7 H 0.067 0.933 8 C -0.118 4.118 9 C -0.009 4.009 10 C -0.490 4.490 11 C 0.077 3.923 12 N -0.890 5.890 13 Si 0.890 3.110 14 H -0.275 1.275 15 H -0.292 1.292 16 H -0.274 1.274 17 C 0.014 3.986 18 C -0.113 4.113 19 C 0.043 3.957 20 O -0.314 6.314 21 C 0.082 3.918 22 C -0.179 4.179 23 C -0.148 4.148 24 C -0.160 4.160 25 C -0.128 4.128 26 C -0.104 4.104 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.131 0.869 31 H 0.398 0.602 32 H 0.035 0.965 33 H 0.052 0.948 34 H 0.024 0.976 35 H 0.018 0.982 36 H 0.265 0.735 37 H 0.060 0.940 38 H 0.005 0.995 39 H 0.053 0.947 40 H 0.035 0.965 41 H 0.068 0.932 42 H 0.065 0.935 43 H 0.063 0.937 44 H 0.066 0.934 45 H 0.072 0.928 46 H 0.064 0.936 47 H 0.066 0.934 48 H 0.122 0.878 49 H 0.060 0.940 50 H 0.065 0.935 51 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.638 -21.856 -1.657 21.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.070 4.070 3 C -0.194 4.194 4 C 0.106 3.894 5 N -0.362 5.362 6 C 0.058 3.942 7 H 0.085 0.915 8 C -0.157 4.157 9 C -0.047 4.047 10 C -0.509 4.509 11 C -0.126 4.126 12 N -0.528 5.528 13 Si 0.719 3.281 14 H -0.200 1.200 15 H -0.219 1.219 16 H -0.200 1.200 17 C -0.024 4.024 18 C -0.152 4.152 19 C -0.005 4.005 20 O -0.229 6.229 21 C 0.026 3.974 22 C -0.237 4.237 23 C -0.206 4.206 24 C -0.179 4.179 25 C -0.130 4.130 26 C -0.160 4.160 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.149 0.851 31 H 0.233 0.767 32 H 0.054 0.946 33 H 0.071 0.929 34 H 0.043 0.957 35 H 0.036 0.964 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.023 0.977 39 H 0.071 0.929 40 H 0.053 0.947 41 H 0.086 0.914 42 H 0.084 0.916 43 H 0.082 0.918 44 H 0.085 0.915 45 H 0.091 0.909 46 H 0.083 0.917 47 H 0.085 0.915 48 H 0.139 0.861 49 H 0.079 0.921 50 H 0.084 0.916 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.742 -21.309 -1.645 21.385 hybrid contribution 0.149 0.058 1.077 1.089 sum 0.891 -21.251 -0.568 21.277 Atomic orbital electron populations 1.20792 0.91739 1.02370 1.01987 1.19356 0.95417 0.91938 1.00332 1.20460 0.91240 0.98383 1.09316 1.17271 0.90961 0.84320 0.96842 1.45118 1.08246 1.02364 1.80491 1.20945 0.94978 0.81428 0.96813 0.91507 1.22009 1.00175 0.97918 0.95629 1.19607 0.95345 0.93452 0.96311 1.20028 1.33905 0.95744 1.01178 1.24831 0.94604 0.95707 0.97452 1.69821 1.40262 1.04709 1.38006 0.86662 0.79744 0.76848 0.84852 1.20024 1.21874 1.19999 1.19335 0.95179 0.92282 0.95623 1.21894 0.98904 0.96905 0.97462 1.18351 0.82162 0.92736 1.07229 1.86034 1.16243 1.31323 1.89279 1.22266 0.93974 0.84424 0.96751 1.22373 1.03015 1.00859 0.97415 1.21842 0.94495 1.02532 1.01690 1.20746 0.94274 0.96033 1.06855 1.19133 0.92610 0.94525 1.06767 1.20678 0.99691 0.94199 1.01463 0.91533 0.91761 0.91619 0.85108 0.76728 0.94642 0.92916 0.95735 0.96350 0.92528 0.92186 0.97659 0.92856 0.94671 0.91366 0.91563 0.91823 0.91504 0.90913 0.91715 0.91525 0.86067 0.92119 0.91643 0.92609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.26 9.60 36.01 0.35 -0.91 16 2 C -0.07 -0.97 5.88 -104.62 -0.62 -1.59 16 3 C -0.17 -2.74 8.50 -39.41 -0.34 -3.08 16 4 C 0.21 3.54 6.65 -83.56 -0.56 2.99 16 5 N -0.74 -12.87 5.24 -52.07 -0.27 -13.15 16 6 C 0.16 3.15 2.05 -67.97 -0.14 3.01 16 7 H 0.07 1.32 6.48 -51.93 -0.34 0.98 16 8 C -0.12 -2.45 5.45 -26.62 -0.15 -2.60 16 9 C -0.01 -0.21 5.59 -27.48 -0.15 -0.36 16 10 C -0.49 -12.80 5.51 -98.93 -0.55 -13.35 16 11 C 0.08 2.10 5.46 -17.82 -0.10 2.00 16 12 N -0.89 -25.58 12.73 55.43 0.71 -24.87 16 13 Si 0.89 21.39 26.80 -169.99 -4.56 16.83 16 14 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 15 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 16 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 17 C 0.01 0.34 5.97 -27.49 -0.16 0.17 16 18 C -0.11 -2.38 5.40 -26.63 -0.14 -2.53 16 19 C 0.04 0.66 6.62 -39.08 -0.26 0.40 16 20 O -0.31 -4.47 9.05 -19.78 -0.18 -4.65 16 21 C 0.08 0.87 2.85 -26.73 -0.08 0.79 16 22 C -0.18 -1.67 9.17 37.16 0.34 -1.33 16 23 C -0.15 -1.30 9.56 37.16 0.36 -0.95 16 24 C -0.16 -2.13 7.89 -39.46 -0.31 -2.44 16 25 C -0.13 -1.67 5.88 -104.60 -0.62 -2.28 16 26 C -0.10 -1.01 9.60 36.01 0.35 -0.67 16 27 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.06 0.71 8.08 -51.93 -0.42 0.29 16 29 H 0.07 0.62 5.93 -51.93 -0.31 0.31 16 30 H 0.13 2.17 6.21 -52.48 -0.33 1.84 16 31 H 0.40 6.82 7.97 -40.82 -0.33 6.50 16 32 H 0.03 0.69 7.81 -51.93 -0.41 0.28 16 33 H 0.05 1.15 8.14 -51.93 -0.42 0.72 16 34 H 0.02 0.57 5.17 -51.93 -0.27 0.30 16 35 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 37 H 0.06 1.62 7.07 -51.93 -0.37 1.25 16 38 H 0.01 0.12 8.14 -51.93 -0.42 -0.30 16 39 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.07 0.67 6.32 -51.93 -0.33 0.35 16 42 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 43 H 0.06 0.64 6.91 -51.93 -0.36 0.29 16 44 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 46 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 48 H 0.12 1.35 5.42 -52.49 -0.28 1.07 16 49 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 50 H 0.06 0.58 5.93 -51.93 -0.31 0.27 16 51 H 0.05 0.48 8.08 -51.93 -0.42 0.06 16 LS Contribution 386.17 15.07 5.82 5.82 Total: -1.00 -28.41 386.17 -9.91 -38.33 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: -8.66 Total: 4.41 kcal Atomic # 6 Polarization: -19.95 SS G_CDS: -2.77 Total: -22.72 kcal Atomic # 7 Polarization: -38.45 SS G_CDS: 0.43 Total: -38.02 kcal Atomic # 8 Polarization: -4.47 SS G_CDS: -0.18 Total: -4.65 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.56 Total: 16.83 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -28.41 -9.91 -38.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167846240.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.711 kcal (2) G-P(sol) polarization free energy of solvation -28.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds