Wall clock time and date at job start Tue Mar 31 2020 11:44:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53377 * 1 3 3 C 1.54374 * 107.37426 * 2 1 4 4 C 1.52776 * 109.39123 * 116.59459 * 2 1 3 5 5 C 1.52924 * 110.16847 * 77.10094 * 4 2 1 6 6 N 1.46805 * 109.28398 * 178.46876 * 5 4 2 7 7 C 1.39675 * 120.00002 * 155.72556 * 6 5 4 8 8 C 1.38918 * 120.07039 * 0.25541 * 7 6 5 9 9 C 1.38104 * 119.92017 * 180.27814 * 8 7 6 10 10 C 1.38286 * 120.07376 * 359.44392 * 9 8 7 11 11 C 1.50699 * 119.92533 * 180.27908 * 10 9 8 12 12 C 1.50700 * 109.47434 * 90.00155 * 11 10 9 13 13 H 1.08008 * 119.99604 * 359.97438 * 12 11 10 14 14 C 1.37872 * 120.00487 * 180.02562 * 12 11 10 15 15 N 1.31518 * 119.99975 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 120.00080 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47399 * 359.97438 * 16 14 12 18 18 H 1.48503 * 109.47454 * 119.99939 * 16 14 12 19 19 H 1.48509 * 109.47005 * 239.99530 * 16 14 12 20 20 C 1.38290 * 120.15196 * 0.30274 * 10 9 8 21 21 C 1.38099 * 120.07139 * 359.97438 * 20 10 9 22 22 C 1.52923 * 108.46201 * 59.41702 * 5 4 2 23 23 C 1.52778 * 110.12140 * 300.45516 * 22 5 4 24 24 C 1.53378 * 109.40421 * 283.15612 * 23 22 5 25 25 C 1.54374 * 107.70301 * 166.73422 * 23 22 5 26 26 O 1.40819 * 111.02422 * 241.73759 * 2 1 3 27 27 H 1.09001 * 109.47593 * 303.39999 * 1 2 3 28 28 H 1.08995 * 109.47466 * 63.40445 * 1 2 3 29 29 H 1.09005 * 109.47292 * 183.40217 * 1 2 3 30 30 H 1.08994 * 109.47621 * 177.70674 * 3 2 1 31 31 H 1.09002 * 109.46844 * 297.71304 * 3 2 1 32 32 H 1.09007 * 109.47296 * 57.70408 * 3 2 1 33 33 H 1.09219 * 109.45222 * 316.75894 * 4 2 1 34 34 H 1.09204 * 109.46584 * 197.46928 * 4 2 1 35 35 H 1.08721 * 110.37795 * 298.36751 * 5 4 2 36 36 H 0.96998 * 119.99804 * 335.73212 * 6 5 4 37 37 H 1.07998 * 120.03882 * 359.97438 * 8 7 6 38 38 H 1.08002 * 119.96506 * 179.72934 * 9 8 7 39 39 H 1.09002 * 109.47584 * 210.00113 * 11 10 9 40 40 H 1.08997 * 109.47372 * 330.00233 * 11 10 9 41 41 H 0.96995 * 119.99967 * 180.02562 * 15 14 12 42 42 H 1.07997 * 119.96283 * 179.97438 * 20 10 9 43 43 H 1.08007 * 120.03493 * 179.97438 * 21 20 10 44 44 H 1.09208 * 109.43045 * 60.81988 * 22 5 4 45 45 H 1.09208 * 109.42295 * 180.09431 * 22 5 4 46 46 H 1.09003 * 109.47059 * 185.08017 * 24 23 22 47 47 H 1.08997 * 109.47489 * 305.09106 * 24 23 22 48 48 H 1.08997 * 109.46735 * 65.09142 * 24 23 22 49 49 H 1.08993 * 109.47226 * 297.75570 * 25 23 22 50 50 H 1.09000 * 109.46924 * 57.75410 * 25 23 22 51 51 H 1.09004 * 109.47386 * 177.75338 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5338 0.0000 0.0000 3 6 1.9948 1.4733 0.0000 4 6 2.0410 -0.6451 1.2886 5 6 1.9138 -2.1666 1.2021 6 7 2.4398 -2.7680 2.4337 7 6 2.0026 -4.0322 2.8356 8 6 1.0741 -4.7241 2.0681 9 6 0.6397 -5.9715 2.4714 10 6 1.1366 -6.5367 3.6316 11 6 0.6649 -7.9007 4.0652 12 6 1.5598 -8.9554 3.4670 13 1 2.3871 -8.6667 2.8355 14 6 1.3218 -10.2887 3.7248 15 7 0.3141 -10.6402 4.4933 16 14 2.4316 -11.5959 2.9838 17 1 3.4846 -10.9446 2.1640 18 1 3.0664 -12.3815 4.0725 19 1 1.6256 -12.5010 2.1255 20 6 2.0649 -5.8528 4.3951 21 6 2.4993 -4.6027 4.0006 22 6 2.7381 -2.6545 0.0100 23 6 2.2285 -2.0126 -1.2793 24 6 0.9340 -2.7086 -1.7179 25 6 3.2830 -2.2651 -2.3781 26 8 2.0390 -0.6224 -1.1577 27 1 -0.3634 0.5657 0.8579 28 1 -0.3634 0.4600 -0.9189 29 1 -0.3634 -1.0259 0.0610 30 1 3.0832 1.5135 0.0411 31 1 1.6471 1.9627 -0.9098 32 1 1.5792 1.9841 0.8687 33 1 1.4541 -0.2794 2.1340 34 1 3.0883 -0.3765 1.4424 35 1 0.8717 -2.4533 1.0846 36 1 3.0908 -2.2873 2.9684 37 1 0.6888 -4.2850 1.1598 38 1 -0.0854 -6.5082 1.8776 39 1 0.6999 -7.9686 5.1525 40 1 -0.3586 -8.0566 3.7242 41 1 0.1469 -11.5782 4.6750 42 1 2.4505 -6.2969 5.3009 43 1 3.2240 -4.0689 4.5976 44 1 3.7865 -2.3876 0.1596 45 1 2.6569 -3.7408 -0.0675 46 1 0.6181 -2.3134 -2.6834 47 1 1.1090 -3.7809 -1.8038 48 1 0.1546 -2.5258 -0.9781 49 1 4.2203 -1.7836 -2.0996 50 1 3.4440 -3.3375 -2.4876 51 1 2.9293 -1.8524 -3.3230 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170360934.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:23 Heat of formation + Delta-G solvation = -41.084212 kcal Electronic energy + Delta-G solvation = -27257.480263 eV Core-core repulsion = 23734.612093 eV Total energy + Delta-G solvation = -3522.868171 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.62464 -38.75413 -35.99344 -35.51269 -33.37193 -32.38593 -30.86003 -30.18928 -29.04750 -27.95702 -27.00361 -26.61239 -25.96971 -23.17230 -22.66282 -21.97829 -21.19285 -19.90104 -18.66975 -16.99028 -16.35295 -16.23473 -16.18621 -15.42199 -15.02869 -14.82819 -14.55635 -14.39793 -14.06774 -13.66717 -13.51699 -13.32957 -12.89438 -12.82288 -12.71397 -12.54924 -12.41811 -12.37159 -12.25968 -12.15102 -12.10785 -11.88426 -11.55397 -11.34862 -11.22658 -11.17673 -11.00924 -10.84863 -10.65724 -10.50912 -10.25480 -10.06437 -9.72194 -9.60237 -9.40236 -8.99562 -8.37259 -8.22549 -6.76063 -5.97005 -4.01428 2.13209 2.37514 3.13517 3.31943 3.39487 3.44861 3.56900 4.35550 4.43598 4.46727 4.51326 4.63707 4.71036 4.76399 4.88666 5.01334 5.07433 5.09543 5.29174 5.33177 5.35694 5.45293 5.48210 5.49354 5.53469 5.55617 5.56723 5.61699 5.65072 5.71326 5.78326 5.80541 5.86906 5.92622 6.05138 6.06677 6.07447 6.15035 6.17686 6.33820 6.46552 6.72637 6.86670 7.31513 7.31907 7.44509 7.61169 7.62697 7.85138 7.98544 7.99135 8.06562 8.41959 9.04745 9.62087 11.11392 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.019992 B = 0.002779 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.220885 B =10071.831198 C =10700.816382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.138 3.862 3 C -0.142 4.142 4 C -0.153 4.153 5 C 0.160 3.840 6 N -0.753 5.753 7 C 0.183 3.817 8 C -0.196 4.196 9 C -0.081 4.081 10 C -0.083 4.083 11 C 0.053 3.947 12 C -0.507 4.507 13 H 0.056 0.944 14 C 0.056 3.944 15 N -0.896 5.896 16 Si 0.892 3.108 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.284 1.284 20 C -0.080 4.080 21 C -0.193 4.193 22 C -0.162 4.162 23 C 0.135 3.865 24 C -0.176 4.176 25 C -0.142 4.142 26 O -0.378 6.378 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.079 0.921 34 H 0.072 0.928 35 H 0.081 0.919 36 H 0.392 0.608 37 H 0.108 0.892 38 H 0.115 0.885 39 H 0.025 0.975 40 H 0.025 0.975 41 H 0.260 0.740 42 H 0.116 0.884 43 H 0.107 0.893 44 H 0.070 0.930 45 H 0.082 0.918 46 H 0.061 0.939 47 H 0.068 0.932 48 H 0.058 0.942 49 H 0.059 0.941 50 H 0.070 0.930 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.076 23.977 -10.097 26.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.098 3.902 3 C -0.199 4.199 4 C -0.191 4.191 5 C 0.054 3.946 6 N -0.385 5.385 7 C 0.083 3.917 8 C -0.218 4.218 9 C -0.099 4.099 10 C -0.085 4.085 11 C 0.016 3.984 12 C -0.545 4.545 13 H 0.075 0.925 14 C -0.145 4.145 15 N -0.536 5.536 16 Si 0.720 3.280 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.210 1.210 20 C -0.098 4.098 21 C -0.215 4.215 22 C -0.201 4.201 23 C 0.096 3.904 24 C -0.233 4.233 25 C -0.199 4.199 26 O -0.298 6.298 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.098 0.902 34 H 0.091 0.909 35 H 0.099 0.901 36 H 0.226 0.774 37 H 0.126 0.874 38 H 0.133 0.867 39 H 0.043 0.957 40 H 0.043 0.957 41 H 0.070 0.930 42 H 0.134 0.866 43 H 0.125 0.875 44 H 0.088 0.912 45 H 0.100 0.900 46 H 0.080 0.920 47 H 0.087 0.913 48 H 0.077 0.923 49 H 0.078 0.922 50 H 0.089 0.911 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.935 23.949 -10.309 26.238 hybrid contribution 0.768 -0.915 0.108 1.199 sum 3.703 23.035 -10.201 25.463 Atomic orbital electron populations 1.22588 0.95672 1.02585 1.02484 1.21134 0.92684 0.92329 0.84049 1.22186 1.01802 0.93561 1.02368 1.22477 1.02743 0.95279 0.98644 1.20622 0.97944 0.91463 0.84589 1.44555 1.49916 1.17607 1.26394 1.17593 0.94848 0.85401 0.93811 1.20526 1.02711 0.97131 1.01416 1.20845 0.99141 0.93766 0.96178 1.20454 0.96130 0.97654 0.94260 1.18251 0.96541 0.86793 0.96843 1.21170 1.13110 0.90432 1.29804 0.92533 1.25022 0.95451 0.98671 0.95344 1.69971 1.29140 1.16867 1.37576 0.86526 0.80745 0.81685 0.79029 1.19709 1.21012 1.21015 1.20829 0.96389 0.93136 0.99481 1.20457 1.05299 0.97861 0.97927 1.22749 1.00725 1.02269 0.94400 1.21222 0.94679 0.80004 0.94532 1.22586 0.97792 1.01007 1.01950 1.22183 0.97986 1.01806 0.97916 1.86199 1.84213 1.21416 1.37987 0.91642 0.91774 0.92218 0.92145 0.91781 0.91267 0.90244 0.90908 0.90106 0.77432 0.87445 0.86705 0.95704 0.95710 0.93021 0.86619 0.87479 0.91170 0.89985 0.91951 0.91312 0.92344 0.92224 0.91068 0.91959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.44 8.39 37.35 0.31 -1.13 16 2 C 0.14 1.20 1.10 -89.82 -0.10 1.10 16 3 C -0.14 -1.01 8.59 37.88 0.33 -0.69 16 4 C -0.15 -1.35 4.20 -26.88 -0.11 -1.46 16 5 C 0.16 1.72 2.03 -67.84 -0.14 1.58 16 6 N -0.75 -9.28 5.25 -52.15 -0.27 -9.56 16 7 C 0.18 2.91 6.64 -83.79 -0.56 2.36 16 8 C -0.20 -3.33 8.90 -39.38 -0.35 -3.68 16 9 C -0.08 -1.61 9.69 -39.61 -0.38 -1.99 16 10 C -0.08 -1.85 5.07 -104.59 -0.53 -2.38 16 11 C 0.05 1.38 5.10 -29.04 -0.15 1.23 16 12 C -0.51 -14.44 9.09 -34.44 -0.31 -14.76 16 13 H 0.06 1.61 7.74 -52.48 -0.41 1.21 16 14 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 15 N -0.90 -26.85 13.29 55.43 0.74 -26.12 16 16 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 17 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 18 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 20 C -0.08 -1.59 9.69 -39.61 -0.38 -1.97 16 21 C -0.19 -3.28 9.90 -39.39 -0.39 -3.67 16 22 C -0.16 -1.75 4.28 -26.88 -0.12 -1.87 16 23 C 0.14 1.34 1.10 -89.82 -0.10 1.24 16 24 C -0.18 -1.69 8.45 37.35 0.32 -1.37 16 25 C -0.14 -1.26 8.58 37.88 0.33 -0.94 16 26 O -0.38 -3.87 8.80 -33.93 -0.30 -4.17 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.53 5.38 -51.93 -0.28 0.25 16 30 H 0.06 0.43 8.11 -51.93 -0.42 0.01 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.40 8.14 -51.92 -0.42 -0.02 16 33 H 0.08 0.66 8.04 -51.81 -0.42 0.25 16 34 H 0.07 0.62 8.02 -51.81 -0.42 0.20 16 35 H 0.08 0.96 4.80 -52.09 -0.25 0.71 16 36 H 0.39 4.21 8.61 -40.82 -0.35 3.86 16 37 H 0.11 1.61 6.17 -52.49 -0.32 1.29 16 38 H 0.11 2.24 8.06 -52.49 -0.42 1.81 16 39 H 0.02 0.68 8.08 -51.93 -0.42 0.26 16 40 H 0.02 0.68 8.08 -51.93 -0.42 0.26 16 41 H 0.26 7.33 8.31 -40.82 -0.34 7.00 16 42 H 0.12 2.25 8.06 -52.49 -0.42 1.83 16 43 H 0.11 1.55 8.06 -52.48 -0.42 1.13 16 44 H 0.07 0.77 8.05 -51.81 -0.42 0.35 16 45 H 0.08 1.01 7.63 -51.81 -0.40 0.62 16 46 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.07 0.66 8.05 -51.93 -0.42 0.24 16 48 H 0.06 0.57 5.45 -51.93 -0.28 0.29 16 49 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 50 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 51 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 394.29 15.07 5.94 5.94 Total: -1.00 -30.51 394.29 -10.35 -40.86 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: -9.00 Total: 3.13 kcal Atomic # 6 Polarization: -24.46 SS G_CDS: -2.44 Total: -26.89 kcal Atomic # 7 Polarization: -36.13 SS G_CDS: 0.46 Total: -35.67 kcal Atomic # 8 Polarization: -3.87 SS G_CDS: -0.30 Total: -4.17 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -30.51 -10.35 -40.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170360934.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.223 kcal (2) G-P(sol) polarization free energy of solvation -30.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds