Wall clock time and date at job start Tue Mar 31 2020 12:01:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47364 * 2 1 4 4 C 1.52993 * 109.50484 * 177.55922 * 3 2 1 5 5 C 1.53005 * 109.47001 * 65.52174 * 4 3 2 6 6 C 1.53119 * 109.50610 * 297.64526 * 3 2 1 7 7 C 1.53117 * 109.16132 * 177.59390 * 6 3 2 8 8 C 1.53029 * 109.27775 * 302.33988 * 7 6 3 9 9 N 1.46848 * 109.52666 * 59.18205 * 8 7 6 10 10 C 1.46898 * 111.00439 * 174.15878 * 9 8 7 11 11 C 1.50702 * 109.46954 * 66.04656 * 10 9 8 12 12 C 1.38299 * 119.93074 * 89.99797 * 11 10 9 13 13 C 1.38101 * 120.06785 * 179.97438 * 12 11 10 14 14 C 1.38875 * 119.93230 * 359.97438 * 13 12 11 15 15 O 1.35756 * 120.07062 * 180.02562 * 14 13 12 16 16 C 1.34824 * 116.99790 * 174.51442 * 15 14 13 17 17 H 1.07997 * 120.00320 * 354.59995 * 16 15 14 18 18 C 1.38655 * 119.99968 * 174.59761 * 16 15 14 19 19 N 1.31557 * 119.99803 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00245 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.46962 * 90.00103 * 20 18 16 22 22 H 1.48499 * 109.46845 * 210.00236 * 20 18 16 23 23 H 1.48490 * 109.47077 * 330.00270 * 20 18 16 24 24 C 1.38875 * 119.86320 * 0.02562 * 14 13 12 25 25 C 1.38107 * 119.92860 * 0.02562 * 24 14 13 26 26 C 1.46853 * 111.19425 * 298.25882 * 9 8 7 27 27 H 1.08993 * 109.47086 * 296.35782 * 1 2 3 28 28 H 1.09004 * 109.46833 * 56.35578 * 1 2 3 29 29 H 1.08995 * 109.47396 * 176.35363 * 1 2 3 30 30 H 1.09000 * 109.46889 * 240.00132 * 2 1 3 31 31 H 1.08996 * 109.47062 * 120.00351 * 2 1 3 32 32 H 1.09002 * 109.47378 * 185.52205 * 4 3 2 33 33 H 1.09005 * 109.47360 * 305.51976 * 4 3 2 34 34 H 1.08998 * 109.47177 * 61.54219 * 5 4 3 35 35 H 1.08999 * 109.46842 * 181.54689 * 5 4 3 36 36 H 1.09000 * 109.46594 * 301.54015 * 5 4 3 37 37 H 1.09000 * 109.52750 * 57.68281 * 6 3 2 38 38 H 1.09000 * 109.51879 * 297.49703 * 6 3 2 39 39 H 1.09000 * 109.50219 * 182.39867 * 7 6 3 40 40 H 1.08998 * 109.50383 * 62.28268 * 7 6 3 41 41 H 1.09001 * 109.46739 * 299.16730 * 8 7 6 42 42 H 1.09001 * 109.45739 * 179.19164 * 8 7 6 43 43 H 1.08994 * 109.47338 * 306.04881 * 10 9 8 44 44 H 1.08999 * 109.47123 * 186.04409 * 10 9 8 45 45 H 1.08007 * 119.96956 * 359.70374 * 12 11 10 46 46 H 1.08001 * 120.03477 * 179.97438 * 13 12 11 47 47 H 0.97005 * 120.00185 * 179.97438 * 19 18 16 48 48 H 1.07994 * 120.03928 * 180.02562 * 24 14 13 49 49 H 1.07997 * 119.96517 * 180.02562 * 25 24 14 50 50 H 1.09001 * 109.45813 * 181.75132 * 26 9 8 51 51 H 1.08997 * 109.46059 * 301.72274 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5688 1.4437 0.0614 5 6 4.1312 0.8278 -1.2213 6 6 1.5791 2.1477 -1.2785 7 6 2.0423 3.6067 -1.2426 8 6 1.4807 4.2844 0.0093 9 7 1.9507 3.5733 1.2051 10 6 1.5452 4.2767 2.4293 11 6 0.0440 4.2387 2.5566 12 6 -0.5652 3.1956 3.2299 13 6 -1.9406 3.1583 3.3487 14 6 -2.7120 4.1699 2.7916 15 8 -4.0642 4.1362 2.9071 16 6 -4.7448 5.2040 2.4441 17 1 -4.2102 6.0713 2.0859 18 6 -6.1312 5.1886 2.4277 19 7 -6.7824 4.1323 2.8644 20 14 -7.0742 6.6683 1.7868 21 1 -7.3028 6.5154 0.3275 22 1 -8.3812 6.7627 2.4854 23 1 -6.2883 7.9028 2.0380 24 6 -2.0972 5.2159 2.1160 25 6 -0.7214 5.2470 1.9997 26 6 1.4784 2.1829 1.2159 27 1 -0.3633 0.4562 0.9208 28 1 -0.3633 0.5694 -0.8556 29 1 -0.3634 -1.0255 -0.0654 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 3.9276 2.4682 0.1603 33 1 3.8984 0.8589 0.9202 34 1 3.8243 1.4283 -2.0776 35 1 5.2195 0.8036 -1.1658 36 1 3.7505 -0.1873 -1.3341 37 1 0.4916 2.1122 -1.3424 38 1 2.0123 1.6493 -2.1458 39 1 1.6806 4.1253 -2.1305 40 1 3.1314 3.6423 -1.2181 41 1 0.3914 4.2607 -0.0225 42 1 1.8205 5.3194 0.0453 43 1 1.8796 5.3129 2.3807 44 1 1.9956 3.7897 3.2942 45 1 0.0349 2.4071 3.6596 46 1 -2.4159 2.3433 3.8743 47 1 -7.7524 4.1216 2.8533 48 1 -2.6943 6.0043 1.6821 49 1 -0.2427 6.0605 1.4749 50 1 1.8166 1.6917 2.1283 51 1 0.3892 2.1691 1.1784 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171949569.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:25 Heat of formation + Delta-G solvation = -36.269647 kcal Electronic energy + Delta-G solvation = -27916.339453 eV Core-core repulsion = 24393.680058 eV Total energy + Delta-G solvation = -3522.659395 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.41339 -40.52736 -38.59562 -36.41422 -34.34722 -33.56148 -32.52808 -31.89841 -30.80467 -29.31483 -27.67367 -26.71676 -25.44307 -24.16999 -23.58251 -23.20007 -22.36102 -21.49121 -19.88065 -18.91336 -18.68035 -16.92594 -16.53188 -16.40761 -16.13346 -16.08516 -15.89631 -15.54149 -15.38202 -15.26926 -14.92993 -14.81553 -14.37493 -14.30134 -14.04284 -13.74486 -13.58694 -13.25623 -13.12563 -12.98909 -12.79317 -12.73416 -12.54888 -12.50133 -12.37143 -12.21697 -12.15266 -12.10359 -11.90434 -11.73847 -11.30938 -11.22244 -11.06529 -10.86121 -10.84343 -10.76082 -9.79433 -9.19988 -8.89966 -8.50585 -6.18812 0.55591 0.65040 1.31905 1.41134 1.49480 2.14683 2.75945 3.06700 3.25309 3.47871 3.77495 3.87514 3.94336 4.02539 4.10701 4.15494 4.23764 4.34337 4.38943 4.45752 4.50545 4.55017 4.56286 4.66613 4.70267 4.74515 4.78653 4.86287 4.91234 4.91958 4.98972 5.03395 5.07040 5.09577 5.10651 5.16300 5.18402 5.20533 5.26173 5.28263 5.33703 5.38055 5.42381 5.53516 5.57833 5.64409 5.68347 5.74696 5.79013 5.99186 6.19387 6.23343 6.27400 6.94126 7.75057 8.72752 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.019060 B = 0.003173 C = 0.003101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.684601 B = 8821.162241 C = 9028.303612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.107 4.107 3 C -0.048 4.048 4 C -0.099 4.099 5 C -0.153 4.153 6 C -0.115 4.115 7 C -0.112 4.112 8 C 0.050 3.950 9 N -0.515 5.515 10 C 0.109 3.891 11 C -0.190 4.190 12 C -0.053 4.053 13 C -0.206 4.206 14 C 0.115 3.885 15 O -0.233 6.233 16 C -0.413 4.413 17 H 0.099 0.901 18 C -0.022 4.022 19 N -0.920 5.920 20 Si 1.017 2.983 21 H -0.263 1.263 22 H -0.270 1.270 23 H -0.253 1.253 24 C -0.244 4.244 25 C -0.057 4.057 26 C 0.062 3.938 27 H 0.040 0.960 28 H 0.047 0.953 29 H 0.056 0.944 30 H 0.075 0.925 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.055 0.945 34 H 0.056 0.944 35 H 0.055 0.945 36 H 0.054 0.946 37 H 0.041 0.959 38 H 0.076 0.924 39 H 0.066 0.934 40 H 0.080 0.920 41 H 0.015 0.985 42 H 0.079 0.921 43 H 0.089 0.911 44 H 0.090 0.910 45 H 0.140 0.860 46 H 0.109 0.891 47 H 0.273 0.727 48 H 0.115 0.885 49 H 0.134 0.866 50 H 0.071 0.929 51 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.212 -3.201 -7.799 23.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.145 4.145 3 C -0.048 4.048 4 C -0.137 4.137 5 C -0.210 4.210 6 C -0.152 4.152 7 C -0.149 4.149 8 C -0.078 4.078 9 N -0.237 5.237 10 C -0.019 4.019 11 C -0.192 4.192 12 C -0.072 4.072 13 C -0.225 4.225 14 C 0.065 3.935 15 O -0.140 6.140 16 C -0.489 4.489 17 H 0.116 0.884 18 C -0.220 4.220 19 N -0.559 5.559 20 Si 0.837 3.163 21 H -0.188 1.188 22 H -0.194 1.194 23 H -0.177 1.177 24 C -0.263 4.263 25 C -0.075 4.075 26 C -0.066 4.066 27 H 0.059 0.941 28 H 0.066 0.934 29 H 0.075 0.925 30 H 0.093 0.907 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.060 0.940 38 H 0.095 0.905 39 H 0.085 0.915 40 H 0.099 0.901 41 H 0.033 0.967 42 H 0.097 0.903 43 H 0.108 0.892 44 H 0.109 0.891 45 H 0.158 0.842 46 H 0.127 0.873 47 H 0.082 0.918 48 H 0.132 0.868 49 H 0.152 0.848 50 H 0.090 0.910 51 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 22.401 -3.445 -7.694 23.934 hybrid contribution -2.332 0.473 0.024 2.380 sum 20.068 -2.973 -7.670 21.689 Atomic orbital electron populations 1.21889 0.97158 1.01315 1.01119 1.21558 0.94562 0.95824 1.02552 1.20563 0.96272 0.94069 0.93929 1.21414 0.92771 1.01736 0.97752 1.21886 1.00511 1.00791 0.97831 1.21752 0.99612 0.95922 0.97902 1.21578 1.01781 0.95275 0.96300 1.22140 0.96860 0.98170 0.90628 1.62440 1.57632 1.02024 1.01623 1.21109 0.87060 1.00373 0.93318 1.20482 0.98310 0.96518 1.03876 1.20845 0.91898 0.97808 0.96605 1.20430 0.94466 1.00002 1.07631 1.19917 0.84233 0.95118 0.94231 1.83949 1.14462 1.42456 1.73110 1.21774 0.89704 0.93906 1.43543 0.88370 1.26586 0.96364 1.02109 0.96916 1.70183 1.08883 1.31121 1.45664 0.84606 0.77336 0.75945 0.78463 1.18774 1.19431 1.17677 1.21236 0.96456 1.01182 1.07465 1.20926 0.91654 0.97989 0.96972 1.22211 0.97113 0.88758 0.98541 0.94119 0.93425 0.92478 0.90691 0.91565 0.90958 0.92580 0.92512 0.92610 0.92692 0.94023 0.90505 0.91491 0.90149 0.96686 0.90273 0.89219 0.89134 0.84193 0.87320 0.91798 0.86762 0.84843 0.91017 0.95755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.57 9.18 71.98 0.66 -2.91 16 2 C -0.11 -1.96 4.70 30.59 0.14 -1.82 16 3 C -0.05 -0.90 0.32 -52.13 -0.02 -0.92 16 4 C -0.10 -1.60 4.47 30.59 0.14 -1.47 16 5 C -0.15 -2.07 9.16 71.98 0.66 -1.41 16 6 C -0.11 -2.25 4.13 30.67 0.13 -2.12 16 7 C -0.11 -2.10 5.74 30.64 0.18 -1.92 16 8 C 0.05 1.12 4.82 86.32 0.42 1.53 16 9 N -0.52 -11.18 4.05 -900.93 -3.65 -14.83 16 10 C 0.11 2.46 5.55 85.56 0.48 2.94 16 11 C -0.19 -5.78 4.04 -19.83 -0.08 -5.86 16 12 C -0.05 -1.78 8.01 22.25 0.18 -1.60 16 13 C -0.21 -8.92 9.99 22.39 0.22 -8.69 16 14 C 0.12 5.85 6.65 22.58 0.15 6.00 16 15 O -0.23 -14.30 9.76 -22.75 -0.22 -14.52 16 16 C -0.41 -24.45 9.44 67.92 0.64 -23.81 16 17 H 0.10 5.37 5.29 -2.91 -0.02 5.35 16 18 C -0.02 -1.28 5.49 84.83 0.47 -0.81 16 19 N -0.92 -57.13 13.67 21.61 0.30 -56.84 16 20 Si 1.02 43.31 29.55 68.60 2.03 45.34 16 21 H -0.26 -10.62 7.11 99.48 0.71 -9.92 16 22 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 23 H -0.25 -10.02 7.11 99.48 0.71 -9.32 16 24 C -0.24 -10.80 9.14 22.39 0.20 -10.60 16 25 C -0.06 -1.96 8.10 22.25 0.18 -1.78 16 26 C 0.06 1.40 2.86 86.33 0.25 1.64 16 27 H 0.04 1.07 6.57 -2.39 -0.02 1.05 16 28 H 0.05 1.15 6.27 -2.38 -0.01 1.13 16 29 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.07 1.20 6.67 -2.39 -0.02 1.19 16 31 H 0.07 1.14 8.14 -2.39 -0.02 1.13 16 32 H 0.07 1.28 6.15 -2.39 -0.01 1.27 16 33 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 34 H 0.06 0.76 6.38 -2.39 -0.02 0.75 16 35 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.05 0.72 6.57 -2.39 -0.02 0.70 16 37 H 0.04 1.00 6.31 -2.39 -0.02 0.98 16 38 H 0.08 1.31 6.24 -2.39 -0.01 1.29 16 39 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.08 1.36 6.71 -2.39 -0.02 1.35 16 41 H 0.01 0.42 6.55 -2.39 -0.02 0.41 16 42 H 0.08 1.58 8.06 -2.39 -0.02 1.57 16 43 H 0.09 1.81 8.00 -2.39 -0.02 1.79 16 44 H 0.09 1.83 8.08 -2.39 -0.02 1.81 16 45 H 0.14 3.80 8.01 -2.91 -0.02 3.78 16 46 H 0.11 4.72 8.06 -2.91 -0.02 4.69 16 47 H 0.27 15.49 8.31 -92.70 -0.77 14.72 16 48 H 0.11 5.20 5.71 -2.91 -0.02 5.19 16 49 H 0.13 3.80 8.03 -2.91 -0.02 3.78 16 50 H 0.07 1.55 8.12 -2.39 -0.02 1.53 16 51 H 0.02 0.70 4.74 -2.39 -0.01 0.69 16 Total: -1.00 -68.34 375.70 4.35 -63.99 By element: Atomic # 1 Polarization: 29.55 SS G_CDS: 0.91 Total: 30.46 kcal Atomic # 6 Polarization: -58.59 SS G_CDS: 4.99 Total: -53.61 kcal Atomic # 7 Polarization: -68.32 SS G_CDS: -3.35 Total: -71.67 kcal Atomic # 8 Polarization: -14.30 SS G_CDS: -0.22 Total: -14.52 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Total: -68.34 4.35 -63.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171949569.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.724 kcal (2) G-P(sol) polarization free energy of solvation -68.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds