Wall clock time and date at job start Tue Mar 31 2020 11:15:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38232 * 120.00259 * 2 1 4 4 C 1.38228 * 120.00623 * 179.97438 * 3 2 1 5 5 C 1.38242 * 120.00101 * 359.97438 * 4 3 2 6 6 C 1.50693 * 120.00169 * 180.02562 * 5 4 3 7 7 O 1.42900 * 109.57677 * 29.84771 * 6 5 4 8 8 C 1.53123 * 109.52221 * 150.00257 * 6 5 4 9 9 C 1.53032 * 109.28106 * 177.55908 * 8 6 5 10 10 N 1.46845 * 109.52181 * 300.82010 * 9 8 6 11 11 C 1.46906 * 111.00051 * 185.83841 * 10 9 8 12 12 H 1.09003 * 109.46907 * 294.05004 * 11 10 9 13 13 C 1.53004 * 109.46962 * 54.05021 * 11 10 9 14 14 C 1.52999 * 109.47345 * 174.04972 * 11 10 9 15 15 C 1.52998 * 109.47103 * 176.71996 * 14 11 10 16 16 C 1.50703 * 109.46947 * 185.19471 * 15 14 11 17 17 H 1.08001 * 120.00027 * 359.97438 * 16 15 14 18 18 C 1.37877 * 119.99854 * 180.02562 * 16 15 14 19 19 N 1.31512 * 119.99912 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99996 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47059 * 89.99770 * 20 18 16 22 22 H 1.48492 * 109.47217 * 209.99814 * 20 18 16 23 23 H 1.48501 * 109.47189 * 330.00095 * 20 18 16 24 24 C 1.46853 * 111.19856 * 61.74495 * 10 9 8 25 25 C 1.53036 * 109.51928 * 298.25511 * 24 10 9 26 26 C 1.38239 * 119.99578 * 0.27755 * 5 4 3 27 27 C 1.38238 * 119.99906 * 359.51497 * 26 5 4 28 28 H 1.08990 * 109.47277 * 90.00145 * 1 2 3 29 29 H 1.09003 * 109.47047 * 210.00094 * 1 2 3 30 30 H 1.08999 * 109.47063 * 329.99679 * 1 2 3 31 31 H 1.08012 * 120.00002 * 359.97438 * 3 2 1 32 32 H 1.08006 * 120.00755 * 180.02562 * 4 3 2 33 33 H 0.96708 * 113.99615 * 300.15385 * 7 6 5 34 34 H 1.09004 * 109.50113 * 57.61407 * 8 6 5 35 35 H 1.09008 * 109.50168 * 297.50288 * 8 6 5 36 36 H 1.09000 * 109.46474 * 180.80711 * 9 8 6 37 37 H 1.08997 * 109.46443 * 60.83355 * 9 8 6 38 38 H 1.09003 * 109.46513 * 299.99721 * 13 11 10 39 39 H 1.08989 * 109.46915 * 59.99948 * 13 11 10 40 40 H 1.09000 * 109.46693 * 180.02562 * 13 11 10 41 41 H 1.09002 * 109.46902 * 56.71679 * 14 11 10 42 42 H 1.08997 * 109.47235 * 296.72108 * 14 11 10 43 43 H 1.08996 * 109.47166 * 305.18952 * 15 14 11 44 44 H 1.08995 * 109.47341 * 65.19261 * 15 14 11 45 45 H 0.97003 * 119.99762 * 180.02562 * 19 18 16 46 46 H 1.09001 * 109.46278 * 58.26844 * 24 10 9 47 47 H 1.09002 * 109.46292 * 178.24037 * 24 10 9 48 48 H 1.08998 * 109.50172 * 299.23653 * 25 24 10 49 49 H 1.08994 * 109.50109 * 179.12136 * 25 24 10 50 50 H 1.07995 * 119.99705 * 179.72302 * 26 5 4 51 51 H 1.07999 * 120.00335 * 180.27439 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5804 1.1972 0.0005 5 6 4.2718 0.0000 0.0016 6 6 5.7787 0.0001 0.0028 7 8 6.2569 1.1682 0.6727 8 6 6.2899 -1.2494 0.7253 9 6 7.8190 -1.2749 0.6702 10 7 8.2595 -1.2830 -0.7306 11 6 9.7164 -1.4469 -0.8234 12 1 10.2082 -0.5709 -0.4004 13 6 10.1398 -2.6947 -0.0458 14 6 10.1201 -1.5993 -2.2913 15 6 11.6440 -1.6879 -2.3946 16 6 12.0486 -1.7096 -3.8461 17 1 11.2943 -1.6651 -4.6178 18 6 13.3818 -1.7873 -4.1890 19 7 14.3003 -1.8420 -3.2494 20 14 13.8834 -1.8149 -5.9883 21 1 14.0981 -0.4245 -6.4636 22 1 15.1412 -2.5896 -6.1397 23 1 12.8096 -2.4525 -6.7918 24 6 7.8207 -0.0699 -1.4323 25 6 6.2916 -0.0085 -1.4399 26 6 3.5806 -1.1972 -0.0037 27 6 2.1982 -1.1972 0.0001 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5139 31 1 1.6582 2.1325 -0.0004 32 1 4.1205 2.1325 0.0010 33 1 5.9708 1.9986 0.2679 34 1 5.8932 -2.1398 0.2373 35 1 5.9635 -1.2277 1.7651 36 1 8.1856 -2.1708 1.1713 37 1 8.2152 -0.3913 1.1704 38 1 9.8523 -2.5860 0.9999 39 1 9.6480 -3.5706 -0.4688 40 1 11.2209 -2.8160 -0.1143 41 1 9.7671 -0.7368 -2.8566 42 1 9.6749 -2.5072 -2.6982 43 1 12.0922 -0.8232 -1.9054 44 1 11.9888 -2.6000 -1.9076 45 1 15.2383 -1.8963 -3.4907 46 1 8.2169 0.8081 -0.9222 47 1 8.1885 -0.0906 -2.4582 48 1 5.8950 -0.8793 -1.9620 49 1 5.9664 0.8998 -1.9471 50 1 4.1206 -2.1324 -0.0073 51 1 1.6582 -2.1325 0.0005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172493518.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:51 Heat of formation + Delta-G solvation = -59.000079 kcal Electronic energy + Delta-G solvation = -26885.035597 eV Core-core repulsion = 23361.390536 eV Total energy + Delta-G solvation = -3523.645061 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.45033 -39.80150 -38.07796 -35.84735 -34.52417 -33.74345 -32.26232 -32.03240 -31.34917 -29.87370 -27.75529 -27.14148 -24.86380 -24.25777 -23.39271 -23.04246 -21.84359 -20.78472 -20.60612 -18.60038 -18.34779 -17.42180 -16.52274 -16.42467 -16.16611 -16.12593 -15.82051 -15.59389 -15.14086 -14.93681 -14.81149 -14.57013 -14.42393 -14.31456 -14.03812 -13.85067 -13.44633 -13.32073 -13.02520 -12.95122 -12.80873 -12.71607 -12.60510 -12.55275 -12.42969 -12.36803 -12.10796 -12.05636 -11.88329 -11.75481 -11.46313 -11.30262 -11.12917 -10.99980 -10.73280 -10.52295 -9.81308 -9.38342 -9.20795 -8.19066 -6.29625 0.39460 0.51336 1.39308 1.40754 1.52038 2.40942 2.78885 2.91779 3.13694 3.39023 3.55472 3.71946 3.80343 4.01032 4.06583 4.10265 4.12821 4.16525 4.29468 4.44686 4.46564 4.47528 4.51727 4.57896 4.62001 4.73043 4.78925 4.84582 4.85343 4.90754 4.93242 4.94518 4.97903 4.99635 5.03028 5.11439 5.15909 5.20512 5.25293 5.28552 5.30432 5.41587 5.52418 5.53533 5.68503 5.72537 5.78893 5.87291 6.12494 6.16020 6.25291 6.31333 6.77260 6.87190 7.38974 8.92594 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.024476 B = 0.002361 C = 0.002278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.699638 B =11858.122970 C =12286.407054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.098 4.098 3 C -0.127 4.127 4 C -0.119 4.119 5 C -0.120 4.120 6 C 0.180 3.820 7 O -0.564 6.564 8 C -0.095 4.095 9 C 0.054 3.946 10 N -0.532 5.532 11 C 0.091 3.909 12 H 0.017 0.983 13 C -0.138 4.138 14 C -0.086 4.086 15 C 0.029 3.971 16 C -0.541 4.541 17 H 0.057 0.943 18 C -0.002 4.002 19 N -0.932 5.932 20 Si 0.964 3.036 21 H -0.273 1.273 22 H -0.281 1.281 23 H -0.264 1.264 24 C 0.055 3.945 25 C -0.124 4.124 26 C -0.118 4.118 27 C -0.129 4.129 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.138 0.862 32 H 0.134 0.866 33 H 0.384 0.616 34 H 0.093 0.907 35 H 0.077 0.923 36 H 0.086 0.914 37 H 0.024 0.976 38 H 0.069 0.931 39 H 0.063 0.937 40 H 0.046 0.954 41 H 0.047 0.953 42 H 0.053 0.947 43 H -0.016 1.016 44 H 0.000 1.000 45 H 0.263 0.737 46 H 0.027 0.973 47 H 0.069 0.931 48 H 0.078 0.922 49 H 0.081 0.919 50 H 0.132 0.868 51 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.510 4.603 8.995 30.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.098 4.098 3 C -0.145 4.145 4 C -0.136 4.136 5 C -0.120 4.120 6 C 0.140 3.860 7 O -0.372 6.372 8 C -0.132 4.132 9 C -0.073 4.073 10 N -0.257 5.257 11 C -0.018 4.018 12 H 0.035 0.965 13 C -0.195 4.195 14 C -0.124 4.124 15 C -0.008 4.008 16 C -0.579 4.579 17 H 0.075 0.925 18 C -0.199 4.199 19 N -0.573 5.573 20 Si 0.789 3.211 21 H -0.198 1.198 22 H -0.207 1.207 23 H -0.188 1.188 24 C -0.073 4.073 25 C -0.162 4.162 26 C -0.136 4.136 27 C -0.146 4.146 28 H 0.095 0.905 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.156 0.844 32 H 0.151 0.849 33 H 0.234 0.766 34 H 0.111 0.889 35 H 0.095 0.905 36 H 0.104 0.896 37 H 0.043 0.957 38 H 0.088 0.912 39 H 0.082 0.918 40 H 0.065 0.935 41 H 0.066 0.934 42 H 0.071 0.929 43 H 0.002 0.998 44 H 0.019 0.981 45 H 0.072 0.928 46 H 0.045 0.955 47 H 0.087 0.913 48 H 0.096 0.904 49 H 0.100 0.900 50 H 0.149 0.851 51 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -28.284 3.746 9.186 29.973 hybrid contribution 1.140 1.173 -0.798 1.820 sum -27.143 4.919 8.388 28.832 Atomic orbital electron populations 1.20831 0.89613 1.03567 1.02972 1.20296 0.97441 0.93146 0.98944 1.21259 0.93965 0.98473 1.00837 1.21095 0.94752 0.97758 1.00041 1.20462 0.95472 0.94405 1.01702 1.19936 0.87997 0.86634 0.91461 1.86581 1.76920 1.16236 1.57462 1.21650 0.94388 0.96154 1.01021 1.22119 0.95764 1.00844 0.88623 1.62043 1.11709 1.37726 1.14185 1.21512 0.86879 0.97026 0.96336 0.96470 1.21855 1.00765 0.97262 0.99653 1.21475 0.96223 1.00443 0.94245 1.18992 0.91714 0.94812 0.95291 1.21689 0.92385 1.50131 0.93691 0.92468 1.25981 0.96824 0.94851 1.02287 1.70100 1.00980 1.51599 1.34583 0.85461 0.77804 0.78374 0.79497 1.19834 1.20662 1.18783 1.22051 0.95801 0.90521 0.98909 1.22173 0.94198 1.03471 0.96380 1.21273 0.94681 0.97964 0.99693 1.21301 0.94004 0.98535 1.00806 0.90523 0.90819 0.90735 0.84396 0.84859 0.76609 0.88860 0.90466 0.89616 0.95736 0.91232 0.91756 0.93459 0.93426 0.92857 0.99778 0.98127 0.92830 0.95463 0.91250 0.90362 0.90046 0.85064 0.84549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.06 10.01 71.23 0.71 -0.35 16 2 C -0.10 -1.44 5.88 -19.87 -0.12 -1.56 16 3 C -0.13 -1.90 9.70 22.27 0.22 -1.68 16 4 C -0.12 -1.94 9.32 22.27 0.21 -1.74 16 5 C -0.12 -2.25 4.85 -19.87 -0.10 -2.34 16 6 C 0.18 3.72 0.85 -11.46 -0.01 3.71 16 7 O -0.56 -12.09 11.58 -148.98 -1.72 -13.81 16 8 C -0.09 -2.05 4.50 30.65 0.14 -1.91 16 9 C 0.05 1.43 4.96 86.32 0.43 1.85 16 10 N -0.53 -16.22 4.53 -871.09 -3.94 -20.17 16 11 C 0.09 3.31 2.17 44.92 0.10 3.41 16 12 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 13 C -0.14 -4.67 8.50 71.98 0.61 -4.06 16 14 C -0.09 -3.73 4.56 30.59 0.14 -3.59 16 15 C 0.03 1.60 4.55 29.85 0.14 1.73 16 16 C -0.54 -31.60 9.11 25.60 0.23 -31.36 16 17 H 0.06 3.22 7.74 -2.91 -0.02 3.20 16 18 C 0.00 -0.11 5.46 84.65 0.46 0.35 16 19 N -0.93 -57.69 13.29 21.45 0.28 -57.40 16 20 Si 0.96 45.10 29.54 68.60 2.03 47.13 16 21 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 22 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 23 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 24 C 0.06 1.58 5.12 86.32 0.44 2.02 16 25 C -0.12 -2.76 5.06 30.65 0.16 -2.61 16 26 C -0.12 -2.11 9.14 22.27 0.20 -1.91 16 27 C -0.13 -2.03 9.70 22.27 0.22 -1.81 16 28 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.07 0.58 8.09 -2.39 -0.02 0.56 16 30 H 0.07 0.56 8.09 -2.39 -0.02 0.54 16 31 H 0.14 1.46 8.06 -2.90 -0.02 1.44 16 32 H 0.13 1.66 6.49 -2.91 -0.02 1.64 16 33 H 0.38 5.62 7.33 -74.05 -0.54 5.07 16 34 H 0.09 1.87 6.38 -2.38 -0.02 1.85 16 35 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 36 H 0.09 2.13 5.87 -2.39 -0.01 2.11 16 37 H 0.02 0.72 7.76 -2.39 -0.02 0.70 16 38 H 0.07 1.97 6.20 -2.39 -0.01 1.96 16 39 H 0.06 2.09 8.14 -2.39 -0.02 2.08 16 40 H 0.05 1.80 6.63 -2.39 -0.02 1.79 16 41 H 0.05 2.05 6.16 -2.39 -0.01 2.03 16 42 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 43 H -0.02 -0.96 8.14 -2.39 -0.02 -0.97 16 44 H 0.00 0.02 6.78 -2.39 -0.02 0.01 16 45 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 46 H 0.03 0.83 7.76 -2.39 -0.02 0.81 16 47 H 0.07 2.18 6.00 -2.39 -0.01 2.17 16 48 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 49 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 50 H 0.13 2.14 6.12 -2.91 -0.02 2.12 16 51 H 0.14 1.62 8.06 -2.91 -0.02 1.60 16 Total: -1.00 -68.44 386.63 1.19 -67.25 By element: Atomic # 1 Polarization: 18.47 SS G_CDS: 0.36 Total: 18.83 kcal Atomic # 6 Polarization: -46.01 SS G_CDS: 4.18 Total: -41.84 kcal Atomic # 7 Polarization: -73.91 SS G_CDS: -3.66 Total: -77.57 kcal Atomic # 8 Polarization: -12.09 SS G_CDS: -1.72 Total: -13.81 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -68.44 1.19 -67.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172493518.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.251 kcal (2) G-P(sol) polarization free energy of solvation -68.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds