Wall clock time and date at job start Tue Mar 31 2020 11:15:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38231 * 119.99743 * 2 1 4 4 C 1.38242 * 119.99830 * 179.97438 * 3 2 1 5 5 C 1.38231 * 119.99775 * 359.97438 * 4 3 2 6 6 C 1.50703 * 120.00186 * 179.97438 * 5 4 3 7 7 O 1.42896 * 109.56981 * 330.16275 * 6 5 4 8 8 C 1.53112 * 109.52767 * 210.00048 * 6 5 4 9 9 C 1.53031 * 109.28110 * 182.43770 * 8 6 5 10 10 N 1.46851 * 109.52251 * 59.18031 * 9 8 6 11 11 C 1.46899 * 111.00401 * 174.16122 * 10 9 8 12 12 H 1.08994 * 109.47518 * 178.40442 * 11 10 9 13 13 C 1.53002 * 109.47033 * 58.40219 * 11 10 9 14 14 C 1.53000 * 109.46793 * 298.40312 * 11 10 9 15 15 C 1.53001 * 109.47564 * 295.52739 * 14 11 10 16 16 C 1.50693 * 109.47406 * 184.99919 * 15 14 11 17 17 H 1.08001 * 120.00057 * 359.97438 * 16 15 14 18 18 C 1.37883 * 120.00047 * 180.02562 * 16 15 14 19 19 N 1.31510 * 119.99616 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00029 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.46902 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.46841 * 119.99955 * 20 18 16 23 23 H 1.48498 * 109.47208 * 240.00142 * 20 18 16 24 24 C 1.46848 * 111.19935 * 298.26156 * 10 9 8 25 25 C 1.53040 * 109.52412 * 61.73428 * 24 10 9 26 26 C 1.38242 * 120.00178 * 0.27545 * 5 4 3 27 27 C 1.38230 * 119.99726 * 179.97438 * 2 1 3 28 28 H 1.09004 * 109.47671 * 89.99641 * 1 2 3 29 29 H 1.09008 * 109.47242 * 209.99645 * 1 2 3 30 30 H 1.09000 * 109.47254 * 329.99096 * 1 2 3 31 31 H 1.07997 * 120.00080 * 359.97438 * 3 2 1 32 32 H 1.07995 * 120.00070 * 179.97438 * 4 3 2 33 33 H 0.96698 * 114.00783 * 59.83453 * 7 6 5 34 34 H 1.09001 * 109.50023 * 62.49657 * 8 6 5 35 35 H 1.09006 * 109.50429 * 302.38386 * 8 6 5 36 36 H 1.09000 * 109.46678 * 299.16429 * 9 8 6 37 37 H 1.09003 * 109.45728 * 179.18699 * 9 8 6 38 38 H 1.08996 * 109.46955 * 180.02562 * 13 11 10 39 39 H 1.08998 * 109.47083 * 60.00278 * 13 11 10 40 40 H 1.09001 * 109.46669 * 300.00037 * 13 11 10 41 41 H 1.09005 * 109.47373 * 55.53480 * 14 11 10 42 42 H 1.09008 * 109.46974 * 175.52586 * 14 11 10 43 43 H 1.09000 * 109.46757 * 305.00305 * 15 14 11 44 44 H 1.08998 * 109.46543 * 64.99532 * 15 14 11 45 45 H 0.97001 * 119.99633 * 179.97438 * 19 18 16 46 46 H 1.08997 * 109.46406 * 181.75579 * 24 10 9 47 47 H 1.09005 * 109.45769 * 301.72526 * 24 10 9 48 48 H 1.09000 * 109.49928 * 180.87933 * 25 24 10 49 49 H 1.09000 * 109.49975 * 60.76863 * 25 24 10 50 50 H 1.08001 * 120.00229 * 179.73009 * 26 5 4 51 51 H 1.08000 * 120.00429 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2717 0.0000 0.0016 6 6 5.7787 0.0000 0.0016 7 8 6.2574 1.1673 -0.6693 8 6 6.2904 -1.2504 -0.7188 9 6 7.8195 -1.2759 -0.6625 10 7 8.2589 -1.2821 0.7387 11 6 9.7157 -1.4459 0.8329 12 1 10.0175 -1.4187 1.8799 13 6 10.4066 -0.3115 0.0734 14 6 10.1185 -2.7890 0.2208 15 6 9.5176 -3.9273 1.0478 16 6 10.0135 -5.2484 0.5192 17 1 10.6894 -5.2738 -0.3227 18 6 9.6035 -6.4250 1.1098 19 7 8.7793 -6.3941 2.1341 20 14 10.2177 -8.0627 0.4541 21 1 11.1273 -7.8258 -0.6954 22 1 10.9523 -8.7810 1.5263 23 1 9.0621 -8.8832 0.0106 24 6 7.8194 -0.0682 1.4385 25 6 6.2903 -0.0067 1.4447 26 6 3.5805 -1.1972 -0.0036 27 6 2.1981 -1.1971 0.0005 28 1 -0.3634 0.0001 -1.0277 29 1 -0.3634 -0.8901 0.5138 30 1 -0.3634 0.8899 0.5140 31 1 1.6581 2.1324 -0.0004 32 1 4.1205 2.1324 0.0001 33 1 5.9710 1.9981 -0.2660 34 1 5.9648 -1.2300 -1.7589 35 1 5.8933 -2.1402 -0.2300 36 1 8.2161 -0.3929 -1.1636 37 1 8.1863 -2.1725 -1.1621 38 1 11.4875 -0.4332 0.1429 39 1 10.1196 0.6453 0.5095 40 1 10.1048 -0.3388 -0.9736 41 1 9.7473 -2.8479 -0.8024 42 1 11.2051 -2.8759 0.2185 43 1 9.8178 -3.8170 2.0898 44 1 8.4304 -3.8927 0.9774 45 1 8.4905 -7.2218 2.5494 46 1 8.1864 -0.0876 2.4647 47 1 8.2161 0.8092 0.9275 48 1 5.9648 0.9023 1.9506 49 1 5.8933 -0.8768 1.9676 50 1 4.1205 -2.1325 -0.0072 51 1 1.6581 -2.1325 0.0005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172493522.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:55 Heat of formation + Delta-G solvation = -39.015892 kcal Electronic energy + Delta-G solvation = -27443.943082 eV Core-core repulsion = 23921.164600 eV Total energy + Delta-G solvation = -3522.778482 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.49634 -38.83666 -36.96804 -33.95522 -33.18746 -32.35875 -31.25093 -30.57654 -30.01150 -28.74593 -26.82995 -25.12425 -23.73447 -23.30660 -22.41363 -21.50647 -20.77350 -19.87657 -18.77657 -17.45951 -16.12445 -16.07553 -15.58702 -15.37189 -15.31484 -14.52432 -14.38385 -14.26071 -14.08418 -13.93374 -13.70249 -13.56154 -13.23331 -12.89079 -12.56047 -12.45141 -12.24180 -12.18026 -11.99550 -11.76439 -11.69947 -11.46845 -11.30384 -11.26853 -11.00576 -10.92867 -10.81609 -10.70965 -10.40931 -10.26240 -9.97038 -9.81606 -9.52694 -9.15699 -9.02336 -8.84583 -8.58441 -8.22218 -7.65759 -5.87408 -3.88585 1.19332 1.30176 3.36690 3.44149 3.48259 3.59442 4.18636 4.40516 4.48163 4.55006 4.62130 4.76104 4.84685 4.89410 4.96299 5.19503 5.31511 5.35365 5.37263 5.47806 5.50280 5.53191 5.54047 5.58546 5.61882 5.73229 5.75096 5.78881 5.87457 5.90024 5.98051 5.98943 6.08939 6.16809 6.24784 6.30423 6.34928 6.38348 6.41830 6.46928 6.51213 6.58885 6.74169 6.89279 6.94071 7.32493 7.56465 7.63736 7.67261 7.87404 8.09323 8.23402 8.58939 9.20728 9.74113 11.23427 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.013321 B = 0.003308 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2101.366550 B = 8461.860553 C =10058.834220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.093 4.093 3 C -0.121 4.121 4 C -0.112 4.112 5 C -0.107 4.107 6 C 0.175 3.825 7 O -0.550 6.550 8 C -0.099 4.099 9 C 0.056 3.944 10 N -0.518 5.518 11 C 0.083 3.917 12 H 0.076 0.924 13 C -0.184 4.184 14 C -0.104 4.104 15 C 0.032 3.968 16 C -0.518 4.518 17 H 0.051 0.949 18 C 0.056 3.944 19 N -0.893 5.893 20 Si 0.885 3.115 21 H -0.274 1.274 22 H -0.286 1.286 23 H -0.285 1.285 24 C 0.059 3.941 25 C -0.134 4.134 26 C -0.104 4.104 27 C -0.118 4.118 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.119 0.881 32 H 0.117 0.883 33 H 0.368 0.632 34 H 0.070 0.930 35 H 0.089 0.911 36 H 0.038 0.962 37 H 0.085 0.915 38 H 0.056 0.944 39 H 0.046 0.954 40 H 0.054 0.946 41 H 0.048 0.952 42 H 0.049 0.951 43 H 0.010 0.990 44 H 0.029 0.971 45 H 0.257 0.743 46 H 0.070 0.930 47 H 0.036 0.964 48 H 0.063 0.937 49 H 0.083 0.917 50 H 0.132 0.868 51 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.911 18.280 -3.509 22.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.093 4.093 3 C -0.139 4.139 4 C -0.130 4.130 5 C -0.107 4.107 6 C 0.135 3.865 7 O -0.355 6.355 8 C -0.137 4.137 9 C -0.072 4.072 10 N -0.242 5.242 11 C -0.025 4.025 12 H 0.094 0.906 13 C -0.242 4.242 14 C -0.142 4.142 15 C -0.005 4.005 16 C -0.557 4.557 17 H 0.069 0.931 18 C -0.144 4.144 19 N -0.533 5.533 20 Si 0.714 3.286 21 H -0.199 1.199 22 H -0.212 1.212 23 H -0.211 1.211 24 C -0.069 4.069 25 C -0.172 4.172 26 C -0.122 4.122 27 C -0.136 4.136 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.137 0.863 32 H 0.135 0.865 33 H 0.215 0.785 34 H 0.088 0.912 35 H 0.108 0.892 36 H 0.056 0.944 37 H 0.103 0.897 38 H 0.075 0.925 39 H 0.065 0.935 40 H 0.073 0.927 41 H 0.067 0.933 42 H 0.067 0.933 43 H 0.028 0.972 44 H 0.047 0.953 45 H 0.067 0.933 46 H 0.089 0.911 47 H 0.054 0.946 48 H 0.082 0.918 49 H 0.102 0.898 50 H 0.149 0.851 51 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -12.944 17.308 -3.542 21.901 hybrid contribution 0.363 0.159 -0.259 0.473 sum -12.581 17.467 -3.801 21.859 Atomic orbital electron populations 1.20784 0.91370 1.02671 1.02202 1.19924 0.95988 0.93299 1.00081 1.20931 0.93983 0.97411 1.01563 1.20812 0.94159 0.97317 1.00721 1.20534 0.96274 0.93663 1.00232 1.20087 0.87260 0.86893 0.92280 1.86617 1.76454 1.15326 1.57147 1.21677 0.96495 0.95186 1.00333 1.22054 0.93995 1.01377 0.89775 1.62086 1.12752 1.35839 1.13485 1.21844 0.85472 0.95421 0.99764 0.90581 1.22492 1.01222 0.99329 1.01207 1.21763 0.99379 0.93552 0.99522 1.18970 0.96986 0.90346 0.94199 1.21398 1.27453 0.91711 1.15100 0.93097 1.24995 0.95336 0.98918 0.95159 1.69992 1.33854 1.26834 1.22636 0.86648 0.78611 0.84535 0.78847 1.19899 1.21190 1.21147 1.21961 0.94127 0.91891 0.98915 1.22227 0.96563 1.02759 0.95612 1.21220 0.94108 0.98156 0.98681 1.21080 0.94219 0.97567 1.00696 0.91303 0.91536 0.91723 0.86317 0.86465 0.78486 0.91174 0.89243 0.94358 0.89672 0.92506 0.93464 0.92660 0.93350 0.93271 0.97200 0.95268 0.93332 0.91131 0.94639 0.91835 0.89823 0.85053 0.85960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.83 10.01 36.01 0.36 -0.47 16 2 C -0.09 -0.93 5.88 -104.63 -0.62 -1.54 16 3 C -0.12 -1.17 9.70 -39.58 -0.38 -1.56 16 4 C -0.11 -1.15 9.32 -39.58 -0.37 -1.52 16 5 C -0.11 -1.26 4.85 -104.62 -0.51 -1.77 16 6 C 0.18 2.17 0.85 -91.65 -0.08 2.09 16 7 O -0.55 -6.54 11.57 -35.23 -0.41 -6.95 16 8 C -0.10 -1.42 4.48 -26.66 -0.12 -1.54 16 9 C 0.06 0.89 4.49 -3.83 -0.02 0.87 16 10 N -0.52 -8.66 4.16 -226.69 -0.94 -9.61 16 11 C 0.08 1.45 2.35 -67.71 -0.16 1.29 16 12 H 0.08 1.37 8.07 -51.93 -0.42 0.95 16 13 C -0.18 -2.70 8.50 37.16 0.32 -2.38 16 14 C -0.10 -2.18 4.45 -26.73 -0.12 -2.30 16 15 C 0.03 0.84 4.80 -27.89 -0.13 0.70 16 16 C -0.52 -14.91 9.11 -34.44 -0.31 -15.23 16 17 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 18 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 19 N -0.89 -27.28 13.29 55.43 0.74 -26.54 16 20 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 16 21 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 24 C 0.06 0.83 4.91 -3.83 -0.02 0.81 16 25 C -0.13 -1.68 5.06 -26.65 -0.13 -1.81 16 26 C -0.10 -1.26 9.14 -39.58 -0.36 -1.62 16 27 C -0.12 -1.28 9.70 -39.58 -0.38 -1.67 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.45 8.09 -51.92 -0.42 0.03 16 30 H 0.06 0.40 8.09 -51.93 -0.42 -0.02 16 31 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 32 H 0.12 0.94 6.49 -52.49 -0.34 0.59 16 33 H 0.37 3.06 7.33 45.56 0.33 3.39 16 34 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.09 1.35 6.38 -51.93 -0.33 1.02 16 36 H 0.04 0.61 6.23 -51.93 -0.32 0.28 16 37 H 0.09 1.50 5.97 -51.93 -0.31 1.19 16 38 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.05 0.64 6.67 -51.93 -0.35 0.29 16 40 H 0.05 0.82 6.51 -51.93 -0.34 0.48 16 41 H 0.05 1.00 6.10 -51.93 -0.32 0.68 16 42 H 0.05 1.02 8.14 -51.92 -0.42 0.59 16 43 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 44 H 0.03 0.81 7.88 -51.93 -0.41 0.41 16 45 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 46 H 0.07 0.98 8.07 -51.93 -0.42 0.56 16 47 H 0.04 0.48 6.37 -51.93 -0.33 0.15 16 48 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 49 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 50 H 0.13 1.61 6.11 -52.49 -0.32 1.29 16 51 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 LS Contribution 386.44 15.07 5.82 5.82 Total: -1.00 -31.89 386.44 -11.00 -42.89 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: -8.06 Total: 3.44 kcal Atomic # 6 Polarization: -22.94 SS G_CDS: -3.14 Total: -26.08 kcal Atomic # 7 Polarization: -35.94 SS G_CDS: -0.21 Total: -36.14 kcal Atomic # 8 Polarization: -6.54 SS G_CDS: -0.41 Total: -6.95 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -31.89 -11.00 -42.89 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172493522.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.876 kcal (2) G-P(sol) polarization free energy of solvation -31.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds