Wall clock time and date at job start Tue Mar 31 2020 11:35:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38169 * 120.02925 * 2 1 4 4 C 1.38239 * 120.05666 * 179.97438 * 3 2 1 5 5 C 1.38287 * 120.11414 * 0.02562 * 4 3 2 6 6 C 1.38125 * 120.05339 * 0.02562 * 5 4 3 7 7 C 1.38707 * 120.02692 * 180.29330 * 2 1 3 8 8 O 1.35899 * 120.06293 * 0.02562 * 7 2 1 9 9 C 1.42894 * 117.00456 * 182.35203 * 8 7 2 10 10 C 1.53119 * 109.52384 * 272.27364 * 9 8 7 11 11 C 1.53044 * 109.27596 * 182.50483 * 10 9 8 12 12 N 1.46846 * 109.57341 * 59.08334 * 11 10 9 13 13 C 1.46906 * 110.99747 * 174.19217 * 12 11 10 14 14 H 1.09005 * 109.47275 * 312.52092 * 13 12 11 15 15 C 1.52998 * 109.47046 * 72.51943 * 13 12 11 16 16 C 1.53000 * 109.47034 * 192.52187 * 13 12 11 17 17 C 1.53001 * 109.47380 * 65.78964 * 16 13 12 18 18 C 1.50696 * 109.46961 * 184.29188 * 17 16 13 19 19 H 1.07997 * 120.00040 * 0.02562 * 18 17 16 20 20 C 1.37876 * 120.00062 * 180.02562 * 18 17 16 21 21 N 1.31512 * 120.00403 * 179.97438 * 20 18 17 22 22 Si 1.86806 * 119.99619 * 0.02562 * 20 18 17 23 23 H 1.48493 * 109.47073 * 89.99946 * 22 20 18 24 24 H 1.48502 * 109.46669 * 210.00215 * 22 20 18 25 25 H 1.48493 * 109.47147 * 329.99728 * 22 20 18 26 26 C 1.46839 * 111.20304 * 298.28895 * 12 11 10 27 27 C 1.53045 * 109.52262 * 61.74365 * 26 12 11 28 28 H 1.08994 * 109.47714 * 90.00506 * 1 2 3 29 29 H 1.09006 * 109.47345 * 210.00487 * 1 2 3 30 30 H 1.09004 * 109.47341 * 329.99906 * 1 2 3 31 31 H 1.08000 * 119.96688 * 359.97438 * 3 2 1 32 32 H 1.07998 * 119.94331 * 180.02562 * 4 3 2 33 33 H 1.07996 * 119.97576 * 180.02562 * 5 4 3 34 34 H 1.08001 * 120.02647 * 180.02562 * 6 5 4 35 35 H 1.08993 * 109.52442 * 32.40299 * 9 8 7 36 36 H 1.09003 * 109.50370 * 302.38027 * 10 9 8 37 37 H 1.08997 * 109.50105 * 62.49805 * 10 9 8 38 38 H 1.09004 * 109.40995 * 299.06881 * 11 10 9 39 39 H 1.08999 * 109.45950 * 179.13313 * 11 10 9 40 40 H 1.09005 * 109.46962 * 59.99957 * 15 13 12 41 41 H 1.09003 * 109.47044 * 180.02562 * 15 13 12 42 42 H 1.09001 * 109.47064 * 299.99854 * 15 13 12 43 43 H 1.09003 * 109.46836 * 185.79630 * 16 13 12 44 44 H 1.08996 * 109.46860 * 305.78577 * 16 13 12 45 45 H 1.09001 * 109.46897 * 304.29079 * 17 16 13 46 46 H 1.09003 * 109.46891 * 64.29128 * 17 16 13 47 47 H 0.97001 * 120.00401 * 179.97438 * 21 20 18 48 48 H 1.09003 * 109.46468 * 301.73168 * 26 12 11 49 49 H 1.08997 * 109.46123 * 181.75678 * 26 12 11 50 50 H 1.09000 * 109.50272 * 180.88451 * 27 26 12 51 51 H 1.08989 * 109.49996 * 60.76080 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1962 0.0000 4 6 3.5808 1.1969 0.0005 5 6 4.2752 0.0010 0.0005 6 6 3.5886 -1.1975 -0.0005 7 6 2.2011 -1.2009 -0.0061 8 8 1.5234 -2.3789 -0.0127 9 6 2.3025 -3.5758 0.0335 10 6 2.6813 -3.9950 -1.3897 11 6 3.4618 -5.3105 -1.3380 12 7 2.6371 -6.3474 -0.7049 13 6 3.3014 -7.6564 -0.7624 14 1 3.6700 -7.8327 -1.7729 15 6 4.4748 -7.6763 0.2192 16 6 2.3024 -8.7522 -0.3855 17 6 1.2037 -8.8281 -1.4475 18 6 0.1641 -9.8335 -1.0239 19 1 0.2757 -10.3648 -0.0903 20 6 -0.9294 -10.0749 -1.8281 21 7 -1.8364 -10.9527 -1.4587 22 14 -1.1220 -9.1563 -3.4433 23 1 -0.4645 -9.9243 -4.5309 24 1 -2.5656 -8.9966 -3.7527 25 1 -0.4890 -7.8178 -3.3299 26 6 2.3016 -5.9879 0.6787 27 6 1.4851 -4.6935 0.6872 28 1 -0.3634 -0.0001 -1.0276 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3634 0.8900 0.5139 31 1 1.6584 2.1315 -0.0004 32 1 4.1194 2.1330 0.0010 33 1 5.3551 0.0041 0.0014 34 1 4.1314 -2.1313 -0.0001 35 1 3.2077 -3.3991 0.6142 36 1 1.7764 -4.1329 -1.9815 37 1 3.2998 -3.2213 -1.8444 38 1 4.3740 -5.1679 -0.7586 39 1 3.7198 -5.6197 -2.3509 40 1 4.1062 -7.5000 1.2298 41 1 4.9680 -8.6474 0.1762 42 1 5.1865 -6.8956 -0.0494 43 1 2.8189 -9.7104 -0.3278 44 1 1.8572 -8.5208 0.5821 45 1 0.7380 -7.8489 -1.5591 46 1 1.6386 -9.1341 -2.3990 47 1 -2.6060 -11.1223 -2.0243 48 1 3.2192 -5.8421 1.2488 49 1 1.7169 -6.7891 1.1306 50 1 1.2497 -4.4185 1.7154 51 1 0.5609 -4.8427 0.1290 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172494317.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:35:26 Heat of formation + Delta-G solvation = -25.311927 kcal Electronic energy + Delta-G solvation = -27171.270280 eV Core-core repulsion = 23649.086047 eV Total energy + Delta-G solvation = -3522.184233 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.71419 -39.23989 -37.57986 -34.77849 -33.07179 -32.64584 -31.15622 -30.56106 -30.06921 -28.92796 -26.94091 -25.49947 -24.43821 -23.34497 -22.26108 -21.68128 -20.96655 -20.01085 -19.04499 -18.22590 -16.63407 -16.41951 -16.02779 -15.73953 -15.33990 -14.84909 -14.80485 -14.41456 -14.14172 -13.97422 -13.82447 -13.37856 -13.31181 -13.13737 -12.77848 -12.51708 -12.49747 -12.46105 -12.20663 -12.07908 -11.90145 -11.79733 -11.56489 -11.49914 -11.34899 -11.15949 -10.87904 -10.70094 -10.54289 -10.41838 -10.26303 -9.74531 -9.65368 -9.45232 -9.04285 -9.01150 -8.42936 -8.25862 -7.96144 -5.94336 -3.90615 1.09433 1.24893 3.04610 3.39378 3.46768 3.53976 3.55010 4.04377 4.52619 4.56301 4.58501 4.64460 4.68498 4.80766 4.93479 5.03340 5.06540 5.13535 5.26876 5.28002 5.31840 5.39164 5.41549 5.44267 5.47352 5.55293 5.56211 5.57949 5.65283 5.68073 5.74946 5.86723 5.94642 6.03634 6.11730 6.12696 6.14860 6.17206 6.20430 6.25316 6.31388 6.35376 6.50068 6.62197 6.68582 7.06450 7.32539 7.34541 7.36956 7.51469 7.72071 7.94057 8.65144 9.11459 9.69929 11.19439 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.016312 B = 0.003044 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.101027 B = 9196.503176 C =10217.191723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.121 4.121 3 C -0.085 4.085 4 C -0.161 4.161 5 C -0.087 4.087 6 C -0.209 4.209 7 C 0.137 3.863 8 O -0.303 6.303 9 C 0.087 3.913 10 C -0.138 4.138 11 C 0.059 3.941 12 N -0.522 5.522 13 C 0.079 3.921 14 H 0.077 0.923 15 C -0.184 4.184 16 C -0.093 4.093 17 C -0.008 4.008 18 C -0.516 4.516 19 H 0.067 0.933 20 C 0.064 3.936 21 N -0.909 5.909 22 Si 0.878 3.122 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.260 1.260 26 C 0.057 3.943 27 C -0.112 4.112 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.062 0.938 31 H 0.126 0.874 32 H 0.121 0.879 33 H 0.121 0.879 34 H 0.129 0.871 35 H 0.069 0.931 36 H 0.085 0.915 37 H 0.067 0.933 38 H 0.030 0.970 39 H 0.078 0.922 40 H 0.057 0.943 41 H 0.060 0.940 42 H 0.046 0.954 43 H 0.054 0.946 44 H 0.055 0.945 45 H 0.032 0.968 46 H 0.003 0.997 47 H 0.261 0.739 48 H 0.033 0.967 49 H 0.094 0.906 50 H 0.072 0.928 51 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.297 23.420 3.922 27.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.122 4.122 3 C -0.103 4.103 4 C -0.179 4.179 5 C -0.105 4.105 6 C -0.228 4.228 7 C 0.091 3.909 8 O -0.217 6.217 9 C 0.031 3.969 10 C -0.176 4.176 11 C -0.069 4.069 12 N -0.246 5.246 13 C -0.029 4.029 14 H 0.096 0.904 15 C -0.243 4.243 16 C -0.131 4.131 17 C -0.045 4.045 18 C -0.554 4.554 19 H 0.085 0.915 20 C -0.136 4.136 21 N -0.549 5.549 22 Si 0.706 3.294 23 H -0.206 1.206 24 H -0.217 1.217 25 H -0.185 1.185 26 C -0.071 4.071 27 C -0.150 4.150 28 H 0.086 0.914 29 H 0.091 0.909 30 H 0.081 0.919 31 H 0.144 0.856 32 H 0.139 0.861 33 H 0.139 0.861 34 H 0.147 0.853 35 H 0.086 0.914 36 H 0.104 0.896 37 H 0.086 0.914 38 H 0.048 0.952 39 H 0.096 0.904 40 H 0.076 0.924 41 H 0.079 0.921 42 H 0.065 0.935 43 H 0.072 0.928 44 H 0.074 0.926 45 H 0.051 0.949 46 H 0.021 0.979 47 H 0.070 0.930 48 H 0.051 0.949 49 H 0.112 0.888 50 H 0.091 0.909 51 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 12.474 23.253 3.594 26.631 hybrid contribution 0.899 0.357 -0.477 1.079 sum 13.373 23.611 3.118 27.313 Atomic orbital electron populations 1.20612 0.90461 1.02774 1.02385 1.19317 0.96646 0.90405 1.05818 1.20877 0.94126 0.96741 0.98546 1.21002 0.94235 0.97982 1.04700 1.20914 0.99661 0.91922 0.97972 1.21305 0.93255 0.99454 1.08766 1.18892 0.90395 0.86053 0.95592 1.86149 1.35898 1.11999 1.87607 1.22608 0.94444 0.82764 0.97133 1.22122 1.02086 0.96811 0.96626 1.21999 0.93794 0.91211 0.99897 1.62070 1.43800 1.01746 1.16996 1.21902 0.92844 0.89326 0.98812 0.90433 1.22494 0.99253 1.01743 1.00819 1.21538 0.96130 0.94875 1.00555 1.19493 0.93810 0.97685 0.93512 1.21229 1.05080 1.21874 1.07260 0.91452 1.25019 0.95698 0.94889 0.97977 1.69926 1.11924 1.34709 1.38341 0.86786 0.76901 0.81492 0.84235 1.20649 1.21704 1.18474 1.22096 0.98273 0.96882 0.89807 1.21679 1.00205 0.92197 1.00931 0.91384 0.90939 0.91871 0.85611 0.86137 0.86066 0.85348 0.91363 0.89643 0.91443 0.95226 0.90357 0.92372 0.92073 0.93540 0.92756 0.92624 0.94940 0.97850 0.92963 0.94930 0.88775 0.90892 0.89420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.01 9.79 36.00 0.35 -0.66 16 2 C -0.12 -1.32 5.89 -104.48 -0.62 -1.93 16 3 C -0.08 -0.78 9.70 -39.61 -0.38 -1.16 16 4 C -0.16 -1.40 10.04 -39.56 -0.40 -1.80 16 5 C -0.09 -0.79 10.04 -39.60 -0.40 -1.19 16 6 C -0.21 -2.20 8.48 -39.43 -0.33 -2.53 16 7 C 0.14 1.63 6.60 -39.22 -0.26 1.37 16 8 O -0.30 -3.91 8.85 -19.42 -0.17 -4.08 16 9 C 0.09 1.02 2.17 -26.60 -0.06 0.97 16 10 C -0.14 -1.66 5.51 -26.65 -0.15 -1.81 16 11 C 0.06 0.73 5.17 -3.83 -0.02 0.71 16 12 N -0.52 -7.74 4.00 -226.68 -0.91 -8.65 16 13 C 0.08 1.21 2.29 -67.71 -0.15 1.06 16 14 H 0.08 1.20 7.94 -51.93 -0.41 0.79 16 15 C -0.18 -2.30 8.41 37.16 0.31 -1.99 16 16 C -0.09 -1.79 4.59 -26.73 -0.12 -1.91 16 17 C -0.01 -0.18 3.98 -27.88 -0.11 -0.29 16 18 C -0.52 -14.90 9.66 -34.44 -0.33 -15.23 16 19 H 0.07 2.09 7.99 -52.49 -0.42 1.67 16 20 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 21 N -0.91 -28.64 13.96 55.43 0.77 -27.87 16 22 Si 0.88 22.41 27.47 -169.99 -4.67 17.74 16 23 H -0.28 -7.04 7.11 56.52 0.40 -6.63 16 24 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 25 H -0.26 -6.45 6.54 56.52 0.37 -6.08 16 26 C 0.06 0.77 4.48 -3.83 -0.02 0.75 16 27 C -0.11 -1.44 5.75 -26.64 -0.15 -1.59 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.07 0.76 7.54 -51.93 -0.39 0.37 16 30 H 0.06 0.48 8.09 -51.93 -0.42 0.06 16 31 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 32 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 33 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 34 H 0.13 1.23 5.63 -52.49 -0.30 0.94 16 35 H 0.07 0.74 5.97 -51.93 -0.31 0.43 16 36 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 37 H 0.07 0.73 7.46 -51.93 -0.39 0.34 16 38 H 0.03 0.33 6.96 -51.93 -0.36 -0.03 16 39 H 0.08 0.96 7.99 -51.93 -0.41 0.54 16 40 H 0.06 0.71 6.45 -51.93 -0.33 0.38 16 41 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.05 0.52 6.91 -51.93 -0.36 0.16 16 43 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 44 H 0.06 1.08 6.30 -51.93 -0.33 0.75 16 45 H 0.03 0.80 6.73 -51.93 -0.35 0.45 16 46 H 0.00 0.08 7.57 -51.93 -0.39 -0.32 16 47 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 48 H 0.03 0.39 6.57 -51.93 -0.34 0.05 16 49 H 0.09 1.41 6.23 -51.93 -0.32 1.09 16 50 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 51 H 0.09 1.29 8.14 -51.94 -0.42 0.87 16 LS Contribution 386.70 15.07 5.83 5.83 Total: -1.00 -31.81 386.70 -10.90 -42.70 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -8.81 Total: -0.24 kcal Atomic # 6 Polarization: -22.50 SS G_CDS: -2.94 Total: -25.43 kcal Atomic # 7 Polarization: -36.38 SS G_CDS: -0.13 Total: -36.51 kcal Atomic # 8 Polarization: -3.91 SS G_CDS: -0.17 Total: -4.08 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -4.67 Total: 17.74 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -31.81 -10.90 -42.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172494317.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.390 kcal (2) G-P(sol) polarization free energy of solvation -31.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds