Wall clock time and date at job start Tue Mar 31 2020 11:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38169 * 120.02925 * 2 1 4 4 C 1.38239 * 120.05666 * 179.97438 * 3 2 1 5 5 C 1.38287 * 120.11414 * 0.02562 * 4 3 2 6 6 C 1.38125 * 120.05339 * 0.02562 * 5 4 3 7 7 C 1.38707 * 120.02692 * 180.29330 * 2 1 3 8 8 O 1.35899 * 120.06293 * 0.02562 * 7 2 1 9 9 C 1.42894 * 117.00456 * 182.35203 * 8 7 2 10 10 C 1.53119 * 109.52384 * 272.27364 * 9 8 7 11 11 C 1.53044 * 109.27596 * 182.50483 * 10 9 8 12 12 N 1.46846 * 109.57341 * 59.08334 * 11 10 9 13 13 C 1.46906 * 110.99747 * 174.19217 * 12 11 10 14 14 H 1.09005 * 109.47275 * 312.52092 * 13 12 11 15 15 C 1.52998 * 109.47046 * 72.51943 * 13 12 11 16 16 C 1.53000 * 109.47034 * 192.52187 * 13 12 11 17 17 C 1.53001 * 109.47380 * 65.78964 * 16 13 12 18 18 C 1.50696 * 109.46961 * 184.29188 * 17 16 13 19 19 H 1.07997 * 120.00040 * 0.02562 * 18 17 16 20 20 C 1.37876 * 120.00062 * 180.02562 * 18 17 16 21 21 N 1.31512 * 120.00403 * 179.97438 * 20 18 17 22 22 Si 1.86806 * 119.99619 * 0.02562 * 20 18 17 23 23 H 1.48493 * 109.47073 * 89.99946 * 22 20 18 24 24 H 1.48502 * 109.46669 * 210.00215 * 22 20 18 25 25 H 1.48493 * 109.47147 * 329.99728 * 22 20 18 26 26 C 1.46839 * 111.20304 * 298.28895 * 12 11 10 27 27 C 1.53045 * 109.52262 * 61.74365 * 26 12 11 28 28 H 1.08994 * 109.47714 * 90.00506 * 1 2 3 29 29 H 1.09006 * 109.47345 * 210.00487 * 1 2 3 30 30 H 1.09004 * 109.47341 * 329.99906 * 1 2 3 31 31 H 1.08000 * 119.96688 * 359.97438 * 3 2 1 32 32 H 1.07998 * 119.94331 * 180.02562 * 4 3 2 33 33 H 1.07996 * 119.97576 * 180.02562 * 5 4 3 34 34 H 1.08001 * 120.02647 * 180.02562 * 6 5 4 35 35 H 1.08993 * 109.52442 * 32.40299 * 9 8 7 36 36 H 1.09003 * 109.50370 * 302.38027 * 10 9 8 37 37 H 1.08997 * 109.50105 * 62.49805 * 10 9 8 38 38 H 1.09004 * 109.40995 * 299.06881 * 11 10 9 39 39 H 1.08999 * 109.45950 * 179.13313 * 11 10 9 40 40 H 1.09005 * 109.46962 * 59.99957 * 15 13 12 41 41 H 1.09003 * 109.47044 * 180.02562 * 15 13 12 42 42 H 1.09001 * 109.47064 * 299.99854 * 15 13 12 43 43 H 1.09003 * 109.46836 * 185.79630 * 16 13 12 44 44 H 1.08996 * 109.46860 * 305.78577 * 16 13 12 45 45 H 1.09001 * 109.46897 * 304.29079 * 17 16 13 46 46 H 1.09003 * 109.46891 * 64.29128 * 17 16 13 47 47 H 0.97001 * 120.00401 * 179.97438 * 21 20 18 48 48 H 1.09003 * 109.46468 * 301.73168 * 26 12 11 49 49 H 1.08997 * 109.46123 * 181.75678 * 26 12 11 50 50 H 1.09000 * 109.50272 * 180.88451 * 27 26 12 51 51 H 1.08989 * 109.49996 * 60.76080 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1962 0.0000 4 6 3.5808 1.1969 0.0005 5 6 4.2752 0.0010 0.0005 6 6 3.5886 -1.1975 -0.0005 7 6 2.2011 -1.2009 -0.0061 8 8 1.5234 -2.3789 -0.0127 9 6 2.3025 -3.5758 0.0335 10 6 2.6813 -3.9950 -1.3897 11 6 3.4618 -5.3105 -1.3380 12 7 2.6371 -6.3474 -0.7049 13 6 3.3014 -7.6564 -0.7624 14 1 3.6700 -7.8327 -1.7729 15 6 4.4748 -7.6763 0.2192 16 6 2.3024 -8.7522 -0.3855 17 6 1.2037 -8.8281 -1.4475 18 6 0.1641 -9.8335 -1.0239 19 1 0.2757 -10.3648 -0.0903 20 6 -0.9294 -10.0749 -1.8281 21 7 -1.8364 -10.9527 -1.4587 22 14 -1.1220 -9.1563 -3.4433 23 1 -0.4645 -9.9243 -4.5309 24 1 -2.5656 -8.9966 -3.7527 25 1 -0.4890 -7.8178 -3.3299 26 6 2.3016 -5.9879 0.6787 27 6 1.4851 -4.6935 0.6872 28 1 -0.3634 -0.0001 -1.0276 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3634 0.8900 0.5139 31 1 1.6584 2.1315 -0.0004 32 1 4.1194 2.1330 0.0010 33 1 5.3551 0.0041 0.0014 34 1 4.1314 -2.1313 -0.0001 35 1 3.2077 -3.3991 0.6142 36 1 1.7764 -4.1329 -1.9815 37 1 3.2998 -3.2213 -1.8444 38 1 4.3740 -5.1679 -0.7586 39 1 3.7198 -5.6197 -2.3509 40 1 4.1062 -7.5000 1.2298 41 1 4.9680 -8.6474 0.1762 42 1 5.1865 -6.8956 -0.0494 43 1 2.8189 -9.7104 -0.3278 44 1 1.8572 -8.5208 0.5821 45 1 0.7380 -7.8489 -1.5591 46 1 1.6386 -9.1341 -2.3990 47 1 -2.6060 -11.1223 -2.0243 48 1 3.2192 -5.8421 1.2488 49 1 1.7169 -6.7891 1.1306 50 1 1.2497 -4.4185 1.7154 51 1 0.5609 -4.8427 0.1290 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172494317.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:35:25 Heat of formation + Delta-G solvation = -42.461732 kcal Electronic energy + Delta-G solvation = -27172.013952 eV Core-core repulsion = 23649.086047 eV Total energy + Delta-G solvation = -3522.927904 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.56789 -40.23257 -38.45904 -36.13440 -34.74535 -33.66485 -32.48094 -31.88170 -30.90407 -30.09093 -27.66592 -27.19213 -25.50479 -24.34995 -23.27833 -22.54755 -22.40489 -21.27104 -20.18341 -19.04322 -18.80417 -17.42989 -16.95766 -16.48586 -16.32864 -16.26096 -15.92848 -15.54264 -15.37967 -15.05261 -14.89918 -14.64117 -14.25615 -14.18526 -14.10052 -13.98017 -13.57017 -13.48541 -13.30414 -13.16285 -13.03814 -12.88274 -12.83069 -12.62176 -12.33766 -12.29448 -12.17927 -11.89258 -11.70538 -11.58106 -11.52174 -11.43119 -11.31949 -11.18316 -11.00093 -10.71260 -9.74647 -9.05712 -9.02307 -8.26072 -6.27507 0.39031 0.51854 1.35200 1.38501 1.52615 2.20135 2.39263 2.82855 2.96842 3.10737 3.64972 3.70279 3.84876 3.91697 3.98368 3.99347 4.16512 4.22079 4.23446 4.32510 4.36099 4.40494 4.42747 4.49737 4.58638 4.63342 4.72091 4.74438 4.77741 4.79601 4.81953 4.86222 4.91623 4.98054 4.99370 5.03788 5.11275 5.13833 5.22582 5.26870 5.32178 5.40904 5.45111 5.55866 5.61273 5.62207 5.71489 5.78513 5.93202 6.26228 6.31620 6.35598 6.51717 6.81357 7.36878 8.91031 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.016312 B = 0.003044 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.101027 B = 9196.503176 C =10217.191723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.141 4.141 3 C -0.089 4.089 4 C -0.161 4.161 5 C -0.091 4.091 6 C -0.217 4.217 7 C 0.109 3.891 8 O -0.322 6.322 9 C 0.092 3.908 10 C -0.131 4.131 11 C 0.063 3.937 12 N -0.547 5.547 13 C 0.087 3.913 14 H 0.079 0.921 15 C -0.175 4.175 16 C -0.088 4.088 17 C 0.001 3.999 18 C -0.525 4.525 19 H 0.029 0.971 20 C 0.002 3.998 21 N -0.956 5.956 22 Si 0.949 3.051 23 H -0.268 1.268 24 H -0.287 1.287 25 H -0.249 1.249 26 C 0.062 3.938 27 C -0.109 4.109 28 H 0.066 0.934 29 H 0.055 0.945 30 H 0.081 0.919 31 H 0.148 0.852 32 H 0.147 0.853 33 H 0.145 0.855 34 H 0.136 0.864 35 H 0.085 0.915 36 H 0.059 0.941 37 H 0.082 0.918 38 H 0.052 0.948 39 H 0.080 0.920 40 H 0.059 0.941 41 H 0.065 0.935 42 H 0.067 0.933 43 H 0.051 0.949 44 H 0.047 0.953 45 H 0.026 0.974 46 H 0.006 0.994 47 H 0.264 0.736 48 H 0.055 0.945 49 H 0.071 0.929 50 H 0.082 0.918 51 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.937 26.276 3.207 30.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.142 4.142 3 C -0.106 4.106 4 C -0.179 4.179 5 C -0.109 4.109 6 C -0.235 4.235 7 C 0.064 3.936 8 O -0.236 6.236 9 C 0.036 3.964 10 C -0.169 4.169 11 C -0.065 4.065 12 N -0.272 5.272 13 C -0.021 4.021 14 H 0.098 0.902 15 C -0.234 4.234 16 C -0.126 4.126 17 C -0.037 4.037 18 C -0.563 4.563 19 H 0.047 0.953 20 C -0.193 4.193 21 N -0.597 5.597 22 Si 0.773 3.227 23 H -0.193 1.193 24 H -0.213 1.213 25 H -0.172 1.172 26 C -0.066 4.066 27 C -0.147 4.147 28 H 0.085 0.915 29 H 0.074 0.926 30 H 0.100 0.900 31 H 0.166 0.834 32 H 0.164 0.836 33 H 0.163 0.837 34 H 0.154 0.846 35 H 0.103 0.897 36 H 0.078 0.922 37 H 0.100 0.900 38 H 0.070 0.930 39 H 0.099 0.901 40 H 0.078 0.922 41 H 0.084 0.916 42 H 0.086 0.914 43 H 0.070 0.930 44 H 0.065 0.935 45 H 0.044 0.956 46 H 0.024 0.976 47 H 0.073 0.927 48 H 0.073 0.927 49 H 0.089 0.911 50 H 0.100 0.900 51 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 15.135 26.120 2.886 30.326 hybrid contribution 0.059 -0.515 -0.170 0.546 sum 15.194 25.604 2.715 29.897 Atomic orbital electron populations 1.20594 0.90267 1.02844 1.02304 1.19607 0.97196 0.90922 1.06475 1.21196 0.94727 0.96957 0.97761 1.21387 0.94202 0.99036 1.03258 1.21265 1.00982 0.91548 0.97100 1.21465 0.92722 1.00488 1.08864 1.19185 0.91289 0.85855 0.97306 1.86118 1.36708 1.12615 1.88157 1.22520 0.94545 0.82237 0.97060 1.22045 1.01182 0.97238 0.96467 1.22018 0.94112 0.90244 1.00117 1.61974 1.45093 1.02260 1.17890 1.21688 0.92485 0.88240 0.99681 0.90247 1.22379 0.98236 1.02865 0.99897 1.21413 0.95785 0.96742 0.98625 1.19374 0.93885 0.95460 0.94954 1.21627 1.06542 1.22353 1.05820 0.95290 1.25977 0.95368 0.95872 1.02128 1.70077 1.12823 1.36666 1.40167 0.85670 0.77101 0.80530 0.79426 1.19290 1.21324 1.17239 1.22011 0.98860 0.96192 0.89512 1.21612 0.99170 0.92733 1.01221 0.91540 0.92642 0.89992 0.83436 0.83562 0.83700 0.84617 0.89708 0.92203 0.89986 0.92975 0.90116 0.92245 0.91627 0.91360 0.93003 0.93473 0.95556 0.97574 0.92744 0.92691 0.91077 0.89968 0.92242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.95 9.79 71.23 0.70 -1.25 16 2 C -0.14 -2.93 5.89 -19.77 -0.12 -3.05 16 3 C -0.09 -1.43 9.70 22.25 0.22 -1.21 16 4 C -0.16 -2.30 10.04 22.28 0.22 -2.08 16 5 C -0.09 -1.39 10.04 22.25 0.22 -1.17 16 6 C -0.22 -4.10 8.48 22.37 0.19 -3.91 16 7 C 0.11 2.49 6.60 22.51 0.15 2.64 16 8 O -0.32 -8.27 8.85 -92.41 -0.82 -9.09 16 9 C 0.09 2.09 2.17 30.68 0.07 2.16 16 10 C -0.13 -2.97 5.51 30.65 0.17 -2.81 16 11 C 0.06 1.39 5.17 86.33 0.45 1.84 16 12 N -0.55 -15.54 4.00 -871.09 -3.49 -19.03 16 13 C 0.09 2.53 2.29 44.91 0.10 2.63 16 14 H 0.08 2.29 7.94 -2.38 -0.02 2.27 16 15 C -0.18 -3.88 8.41 71.98 0.61 -3.28 16 16 C -0.09 -3.38 4.59 30.59 0.14 -3.24 16 17 C 0.00 0.03 3.98 29.85 0.12 0.15 16 18 C -0.53 -31.31 9.66 25.60 0.25 -31.06 16 19 H 0.03 1.89 7.99 -2.91 -0.02 1.86 16 20 C 0.00 0.15 5.47 84.65 0.46 0.61 16 21 N -0.96 -62.00 13.96 21.45 0.30 -61.70 16 22 Si 0.95 46.74 27.47 68.60 1.88 48.63 16 23 H -0.27 -12.59 7.11 99.48 0.71 -11.89 16 24 H -0.29 -13.90 7.11 99.48 0.71 -13.20 16 25 H -0.25 -11.69 6.54 99.48 0.65 -11.04 16 26 C 0.06 1.62 4.48 86.33 0.39 2.01 16 27 C -0.11 -2.80 5.75 30.65 0.18 -2.62 16 28 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.05 1.21 7.54 -2.38 -0.02 1.19 16 30 H 0.08 1.17 8.09 -2.38 -0.02 1.15 16 31 H 0.15 1.61 8.06 -2.91 -0.02 1.59 16 32 H 0.15 1.29 8.06 -2.91 -0.02 1.27 16 33 H 0.15 1.46 8.06 -2.91 -0.02 1.43 16 34 H 0.14 2.24 5.63 -2.91 -0.02 2.23 16 35 H 0.09 1.64 5.97 -2.39 -0.01 1.62 16 36 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.08 1.61 7.46 -2.39 -0.02 1.59 16 38 H 0.05 0.95 6.96 -2.38 -0.02 0.93 16 39 H 0.08 1.76 7.99 -2.39 -0.02 1.74 16 40 H 0.06 1.31 6.45 -2.38 -0.02 1.29 16 41 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.07 1.25 6.91 -2.39 -0.02 1.23 16 43 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 44 H 0.05 1.87 6.30 -2.39 -0.02 1.86 16 45 H 0.03 1.30 6.73 -2.39 -0.02 1.28 16 46 H 0.01 0.28 7.57 -2.39 -0.02 0.26 16 47 H 0.26 15.99 8.31 -92.71 -0.77 15.22 16 48 H 0.06 1.19 6.57 -2.39 -0.02 1.18 16 49 H 0.07 2.18 6.23 -2.39 -0.01 2.16 16 50 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 51 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -70.92 386.70 3.21 -67.70 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: 0.83 Total: 17.15 kcal Atomic # 6 Polarization: -48.16 SS G_CDS: 4.50 Total: -43.65 kcal Atomic # 7 Polarization: -77.55 SS G_CDS: -3.19 Total: -80.74 kcal Atomic # 8 Polarization: -8.27 SS G_CDS: -0.82 Total: -9.09 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 1.88 Total: 48.63 kcal Total: -70.92 3.21 -67.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172494317.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.240 kcal (2) G-P(sol) polarization free energy of solvation -70.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds