Wall clock time and date at job start Tue Mar 31 2020 11:35:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38166 * 120.02722 * 2 1 4 4 C 1.38253 * 120.05487 * 179.97438 * 3 2 1 5 5 C 1.38292 * 120.10893 * 0.02562 * 4 3 2 6 6 C 1.38122 * 120.05640 * 0.02562 * 5 4 3 7 7 C 1.38712 * 120.03112 * 180.29380 * 2 1 3 8 8 O 1.35905 * 120.05399 * 0.02562 * 7 2 1 9 9 C 1.42904 * 117.00125 * 185.45151 * 8 7 2 10 10 C 1.53111 * 109.52494 * 275.51191 * 9 8 7 11 11 C 1.53045 * 109.27559 * 182.50495 * 10 9 8 12 12 N 1.46847 * 109.57689 * 59.07960 * 11 10 9 13 13 C 1.46900 * 111.00208 * 174.19576 * 12 11 10 14 14 H 1.09000 * 109.47198 * 174.06626 * 13 12 11 15 15 C 1.52993 * 109.47114 * 54.06485 * 13 12 11 16 16 C 1.52999 * 109.46807 * 294.06438 * 13 12 11 17 17 C 1.52996 * 109.47661 * 297.49030 * 16 13 12 18 18 C 1.50694 * 109.47606 * 179.97438 * 17 16 13 19 19 H 1.08006 * 119.99796 * 0.02562 * 18 17 16 20 20 C 1.37882 * 120.00302 * 179.97438 * 18 17 16 21 21 N 1.31508 * 119.99916 * 180.02562 * 20 18 17 22 22 Si 1.86795 * 119.99549 * 0.02562 * 20 18 17 23 23 H 1.48502 * 109.47308 * 90.00132 * 22 20 18 24 24 H 1.48503 * 109.47001 * 209.99693 * 22 20 18 25 25 H 1.48493 * 109.47470 * 329.99896 * 22 20 18 26 26 C 1.46849 * 111.20099 * 298.29411 * 12 11 10 27 27 C 1.53042 * 109.52263 * 61.73650 * 26 12 11 28 28 H 1.08997 * 109.47138 * 89.99672 * 1 2 3 29 29 H 1.08999 * 109.47207 * 210.00133 * 1 2 3 30 30 H 1.09006 * 109.47230 * 330.00019 * 1 2 3 31 31 H 1.07999 * 119.97686 * 359.97438 * 3 2 1 32 32 H 1.07998 * 119.94149 * 180.02562 * 4 3 2 33 33 H 1.08001 * 119.96709 * 180.02562 * 5 4 3 34 34 H 1.08003 * 120.02460 * 180.02562 * 6 5 4 35 35 H 1.09002 * 109.51728 * 35.63873 * 9 8 7 36 36 H 1.09010 * 109.50338 * 302.37973 * 10 9 8 37 37 H 1.08999 * 109.50932 * 62.49900 * 10 9 8 38 38 H 1.08999 * 109.40661 * 299.06724 * 11 10 9 39 39 H 1.09000 * 109.45521 * 179.12498 * 11 10 9 40 40 H 1.09000 * 109.47202 * 300.00137 * 15 13 12 41 41 H 1.09004 * 109.47157 * 59.99871 * 15 13 12 42 42 H 1.08999 * 109.47452 * 180.02562 * 15 13 12 43 43 H 1.09000 * 109.47378 * 57.49802 * 16 13 12 44 44 H 1.09006 * 109.46643 * 177.49331 * 16 13 12 45 45 H 1.09000 * 109.47356 * 300.00786 * 17 16 13 46 46 H 1.09007 * 109.46534 * 59.99983 * 17 16 13 47 47 H 0.96998 * 119.99629 * 180.02562 * 21 20 18 48 48 H 1.09001 * 109.46203 * 301.72736 * 26 12 11 49 49 H 1.09001 * 109.46374 * 181.75535 * 26 12 11 50 50 H 1.08993 * 109.50402 * 180.87938 * 27 26 12 51 51 H 1.09008 * 109.53178 * 60.78723 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1962 0.0000 4 6 3.5809 1.1969 0.0005 5 6 4.2752 0.0009 0.0005 6 6 3.5886 -1.1976 -0.0005 7 6 2.2012 -1.2009 -0.0062 8 8 1.5234 -2.3788 -0.0127 9 6 2.2984 -3.5740 0.1021 10 6 2.8107 -3.9865 -1.2805 11 6 3.5869 -5.3000 -1.1604 12 7 2.7095 -6.3417 -0.6113 13 6 3.3803 -7.6486 -0.6107 14 1 2.7506 -8.3800 -0.1040 15 6 4.7191 -7.5343 0.1208 16 6 3.6238 -8.0975 -2.0530 17 6 2.2817 -8.2721 -2.7664 18 6 2.5215 -8.7136 -4.1871 19 1 3.5305 -8.8558 -4.5453 20 6 1.4530 -8.9370 -5.0294 21 7 1.6624 -9.3227 -6.2691 22 14 -0.2919 -8.6917 -4.4096 23 1 -0.7116 -7.2884 -4.6546 24 1 -1.2068 -9.6145 -5.1283 25 1 -0.3447 -8.9770 -2.9533 26 6 2.2443 -5.9884 0.7360 27 6 1.4266 -4.6962 0.6722 28 1 -0.3633 0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5139 31 1 1.6584 2.1316 -0.0004 32 1 4.1195 2.1330 0.0010 33 1 5.3552 0.0041 0.0014 34 1 4.1314 -2.1313 -0.0001 35 1 3.1445 -3.3969 0.7662 36 1 1.9658 -4.1246 -1.9553 37 1 3.4669 -3.2095 -1.6723 38 1 4.4401 -5.1572 -0.4972 39 1 3.9398 -5.6046 -2.1457 40 1 5.3488 -6.8030 -0.3859 41 1 4.5456 -7.2145 1.1483 42 1 5.2171 -8.5039 0.1209 43 1 4.2163 -7.3445 -2.5728 44 1 4.1611 -9.0459 -2.0525 45 1 1.6892 -9.0251 -2.2467 46 1 1.7444 -7.3237 -2.7668 47 1 0.9107 -9.4795 -6.8617 48 1 3.1038 -5.8423 1.3902 49 1 1.6221 -6.7929 1.1280 50 1 1.0947 -4.4259 1.6745 51 1 0.5590 -4.8453 0.0294 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172494318.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:35:29 Heat of formation + Delta-G solvation = -26.078332 kcal Electronic energy + Delta-G solvation = -27261.160510 eV Core-core repulsion = 23738.943043 eV Total energy + Delta-G solvation = -3522.217467 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.70559 -39.23245 -37.56436 -34.77742 -33.06840 -32.64038 -31.01157 -30.75096 -29.98185 -28.93534 -26.92256 -25.49721 -24.43645 -23.30583 -22.28897 -21.62175 -20.97427 -19.99863 -19.04969 -18.19812 -16.62305 -16.50024 -15.91122 -15.69322 -15.48323 -14.84869 -14.71072 -14.37916 -14.15989 -13.97865 -13.74078 -13.43867 -13.27246 -13.18065 -12.73535 -12.57868 -12.47192 -12.44313 -12.19150 -12.05530 -11.96751 -11.76762 -11.53166 -11.48334 -11.35631 -11.08746 -10.87105 -10.69381 -10.55580 -10.50616 -10.16585 -9.87387 -9.58037 -9.44980 -9.01510 -9.00595 -8.43176 -8.23694 -7.96709 -5.94712 -3.91033 1.12750 1.27721 3.05369 3.40647 3.46920 3.53507 3.57141 4.04521 4.54119 4.56032 4.60862 4.66697 4.71425 4.85051 4.92386 5.06229 5.09630 5.11289 5.26927 5.28460 5.31305 5.40727 5.41416 5.45015 5.48029 5.55585 5.56595 5.58062 5.66557 5.69067 5.74357 5.86752 5.93844 6.04062 6.09797 6.14770 6.16074 6.19336 6.19886 6.26819 6.34549 6.35981 6.51127 6.64624 6.68089 7.06015 7.33617 7.34948 7.37579 7.52866 7.69638 7.93658 8.64838 9.11133 9.69595 11.19101 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.014204 B = 0.003191 C = 0.002928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1970.751927 B = 8773.374538 C = 9561.205074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.122 4.122 3 C -0.085 4.085 4 C -0.160 4.160 5 C -0.086 4.086 6 C -0.207 4.207 7 C 0.136 3.864 8 O -0.305 6.305 9 C 0.088 3.912 10 C -0.142 4.142 11 C 0.056 3.944 12 N -0.522 5.522 13 C 0.079 3.921 14 H 0.079 0.921 15 C -0.185 4.185 16 C -0.094 4.094 17 C -0.005 4.005 18 C -0.518 4.518 19 H 0.067 0.933 20 C 0.064 3.936 21 N -0.909 5.909 22 Si 0.882 3.118 23 H -0.278 1.278 24 H -0.292 1.292 25 H -0.264 1.264 26 C 0.059 3.941 27 C -0.110 4.110 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.062 0.938 31 H 0.126 0.874 32 H 0.121 0.879 33 H 0.122 0.878 34 H 0.130 0.870 35 H 0.067 0.933 36 H 0.087 0.913 37 H 0.070 0.930 38 H 0.031 0.969 39 H 0.092 0.908 40 H 0.056 0.944 41 H 0.046 0.954 42 H 0.060 0.940 43 H 0.053 0.947 44 H 0.055 0.945 45 H 0.009 0.991 46 H 0.026 0.974 47 H 0.261 0.739 48 H 0.031 0.969 49 H 0.081 0.919 50 H 0.071 0.929 51 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.105 18.586 18.241 26.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.122 4.122 3 C -0.104 4.104 4 C -0.178 4.178 5 C -0.105 4.105 6 C -0.226 4.226 7 C 0.090 3.910 8 O -0.218 6.218 9 C 0.032 3.968 10 C -0.180 4.180 11 C -0.072 4.072 12 N -0.246 5.246 13 C -0.029 4.029 14 H 0.097 0.903 15 C -0.243 4.243 16 C -0.132 4.132 17 C -0.043 4.043 18 C -0.556 4.556 19 H 0.085 0.915 20 C -0.136 4.136 21 N -0.549 5.549 22 Si 0.709 3.291 23 H -0.204 1.204 24 H -0.218 1.218 25 H -0.189 1.189 26 C -0.069 4.069 27 C -0.148 4.148 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.081 0.919 31 H 0.144 0.856 32 H 0.139 0.861 33 H 0.140 0.860 34 H 0.147 0.853 35 H 0.085 0.915 36 H 0.105 0.895 37 H 0.088 0.912 38 H 0.049 0.951 39 H 0.110 0.890 40 H 0.075 0.925 41 H 0.066 0.934 42 H 0.079 0.921 43 H 0.072 0.928 44 H 0.074 0.926 45 H 0.027 0.973 46 H 0.045 0.955 47 H 0.070 0.930 48 H 0.050 0.950 49 H 0.100 0.900 50 H 0.090 0.910 51 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 2.382 18.445 17.761 25.716 hybrid contribution 0.137 0.099 0.625 0.647 sum 2.520 18.544 18.386 26.235 Atomic orbital electron populations 1.20603 0.90543 1.02600 1.02403 1.19306 0.96588 0.90433 1.05910 1.20871 0.94137 0.96713 0.98634 1.21013 0.94227 0.98002 1.04593 1.20931 0.99727 0.91916 0.97886 1.21337 0.93221 0.99528 1.08464 1.18865 0.90404 0.85933 0.95761 1.86122 1.36238 1.12136 1.87342 1.22570 0.94014 0.82735 0.97478 1.22188 1.01773 0.97138 0.96889 1.22076 0.93361 0.90483 1.01232 1.62084 1.39626 1.02218 1.20712 1.21901 0.92405 0.90009 0.98556 0.90328 1.22491 0.99582 1.02388 0.99880 1.21547 1.00408 0.99636 0.91579 1.19460 0.92825 0.96785 0.95215 1.21248 0.94730 1.44910 0.94693 0.91470 1.25024 0.99165 0.94736 0.94689 1.69929 1.31306 1.47846 1.05816 0.86743 0.84760 0.78060 0.79505 1.20375 1.21823 1.18890 1.22023 0.97920 0.96580 0.90412 1.21633 0.99430 0.92349 1.01391 0.91344 0.91097 0.91916 0.85631 0.86118 0.86003 0.85271 0.91533 0.89483 0.91187 0.95068 0.88969 0.92486 0.93448 0.92065 0.92835 0.92608 0.97280 0.95535 0.92960 0.95039 0.90043 0.91030 0.89632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.00 9.79 36.00 0.35 -0.65 16 2 C -0.12 -1.35 5.89 -104.48 -0.62 -1.97 16 3 C -0.09 -0.81 9.70 -39.60 -0.38 -1.20 16 4 C -0.16 -1.46 10.04 -39.56 -0.40 -1.86 16 5 C -0.09 -0.84 10.04 -39.60 -0.40 -1.23 16 6 C -0.21 -2.28 8.25 -39.44 -0.33 -2.60 16 7 C 0.14 1.66 6.57 -39.22 -0.26 1.40 16 8 O -0.30 -3.94 8.86 -19.44 -0.17 -4.11 16 9 C 0.09 1.04 2.18 -26.61 -0.06 0.98 16 10 C -0.14 -1.86 5.37 -26.65 -0.14 -2.00 16 11 C 0.06 0.77 4.54 -3.83 -0.02 0.76 16 12 N -0.52 -7.72 3.95 -226.68 -0.89 -8.61 16 13 C 0.08 1.21 2.34 -67.72 -0.16 1.05 16 14 H 0.08 1.21 7.98 -51.93 -0.41 0.80 16 15 C -0.18 -2.31 8.45 37.15 0.31 -2.00 16 16 C -0.09 -1.81 4.51 -26.73 -0.12 -1.93 16 17 C -0.01 -0.13 3.91 -27.89 -0.11 -0.24 16 18 C -0.52 -14.98 9.66 -34.44 -0.33 -15.31 16 19 H 0.07 2.09 7.99 -52.48 -0.42 1.67 16 20 C 0.06 1.91 5.47 -17.82 -0.10 1.82 16 21 N -0.91 -28.69 13.96 55.43 0.77 -27.92 16 22 Si 0.88 22.53 27.47 -169.99 -4.67 17.87 16 23 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 24 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 25 H -0.26 -6.52 6.54 56.52 0.37 -6.15 16 26 C 0.06 0.71 5.13 -3.83 -0.02 0.69 16 27 C -0.11 -1.28 5.75 -26.65 -0.15 -1.43 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.07 0.72 7.54 -51.93 -0.39 0.33 16 30 H 0.06 0.47 8.09 -51.93 -0.42 0.05 16 31 H 0.13 0.90 8.06 -52.49 -0.42 0.47 16 32 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 33 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 34 H 0.13 1.32 5.39 -52.48 -0.28 1.04 16 35 H 0.07 0.72 6.34 -51.93 -0.33 0.39 16 36 H 0.09 1.33 8.14 -51.92 -0.42 0.91 16 37 H 0.07 0.86 6.85 -51.93 -0.36 0.50 16 38 H 0.03 0.38 6.58 -51.93 -0.34 0.04 16 39 H 0.09 1.43 6.17 -51.93 -0.32 1.11 16 40 H 0.06 0.71 6.46 -51.93 -0.34 0.37 16 41 H 0.05 0.53 6.82 -51.93 -0.35 0.18 16 42 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.05 1.04 6.32 -51.93 -0.33 0.71 16 44 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 45 H 0.01 0.22 7.20 -51.93 -0.37 -0.15 16 46 H 0.03 0.65 7.10 -51.92 -0.37 0.28 16 47 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 48 H 0.03 0.34 6.88 -51.93 -0.36 -0.01 16 49 H 0.08 0.95 8.01 -51.93 -0.42 0.53 16 50 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 51 H 0.09 1.13 8.14 -51.92 -0.42 0.70 16 LS Contribution 385.64 15.07 5.81 5.81 Total: -1.00 -31.90 385.64 -10.85 -42.75 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -8.78 Total: -0.07 kcal Atomic # 6 Polarization: -22.80 SS G_CDS: -2.92 Total: -25.72 kcal Atomic # 7 Polarization: -36.41 SS G_CDS: -0.12 Total: -36.53 kcal Atomic # 8 Polarization: -3.94 SS G_CDS: -0.17 Total: -4.11 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -4.67 Total: 17.87 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -31.90 -10.85 -42.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172494318.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.675 kcal (2) G-P(sol) polarization free energy of solvation -31.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds