Wall clock time and date at job start Tue Mar 31 2020 11:35:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38166 * 120.02722 * 2 1 4 4 C 1.38253 * 120.05487 * 179.97438 * 3 2 1 5 5 C 1.38292 * 120.10893 * 0.02562 * 4 3 2 6 6 C 1.38122 * 120.05640 * 0.02562 * 5 4 3 7 7 C 1.38712 * 120.03112 * 180.29380 * 2 1 3 8 8 O 1.35905 * 120.05399 * 0.02562 * 7 2 1 9 9 C 1.42904 * 117.00125 * 185.45151 * 8 7 2 10 10 C 1.53111 * 109.52494 * 275.51191 * 9 8 7 11 11 C 1.53045 * 109.27559 * 182.50495 * 10 9 8 12 12 N 1.46847 * 109.57689 * 59.07960 * 11 10 9 13 13 C 1.46900 * 111.00208 * 174.19576 * 12 11 10 14 14 H 1.09000 * 109.47198 * 174.06626 * 13 12 11 15 15 C 1.52993 * 109.47114 * 54.06485 * 13 12 11 16 16 C 1.52999 * 109.46807 * 294.06438 * 13 12 11 17 17 C 1.52996 * 109.47661 * 297.49030 * 16 13 12 18 18 C 1.50694 * 109.47606 * 179.97438 * 17 16 13 19 19 H 1.08006 * 119.99796 * 0.02562 * 18 17 16 20 20 C 1.37882 * 120.00302 * 179.97438 * 18 17 16 21 21 N 1.31508 * 119.99916 * 180.02562 * 20 18 17 22 22 Si 1.86795 * 119.99549 * 0.02562 * 20 18 17 23 23 H 1.48502 * 109.47308 * 90.00132 * 22 20 18 24 24 H 1.48503 * 109.47001 * 209.99693 * 22 20 18 25 25 H 1.48493 * 109.47470 * 329.99896 * 22 20 18 26 26 C 1.46849 * 111.20099 * 298.29411 * 12 11 10 27 27 C 1.53042 * 109.52263 * 61.73650 * 26 12 11 28 28 H 1.08997 * 109.47138 * 89.99672 * 1 2 3 29 29 H 1.08999 * 109.47207 * 210.00133 * 1 2 3 30 30 H 1.09006 * 109.47230 * 330.00019 * 1 2 3 31 31 H 1.07999 * 119.97686 * 359.97438 * 3 2 1 32 32 H 1.07998 * 119.94149 * 180.02562 * 4 3 2 33 33 H 1.08001 * 119.96709 * 180.02562 * 5 4 3 34 34 H 1.08003 * 120.02460 * 180.02562 * 6 5 4 35 35 H 1.09002 * 109.51728 * 35.63873 * 9 8 7 36 36 H 1.09010 * 109.50338 * 302.37973 * 10 9 8 37 37 H 1.08999 * 109.50932 * 62.49900 * 10 9 8 38 38 H 1.08999 * 109.40661 * 299.06724 * 11 10 9 39 39 H 1.09000 * 109.45521 * 179.12498 * 11 10 9 40 40 H 1.09000 * 109.47202 * 300.00137 * 15 13 12 41 41 H 1.09004 * 109.47157 * 59.99871 * 15 13 12 42 42 H 1.08999 * 109.47452 * 180.02562 * 15 13 12 43 43 H 1.09000 * 109.47378 * 57.49802 * 16 13 12 44 44 H 1.09006 * 109.46643 * 177.49331 * 16 13 12 45 45 H 1.09000 * 109.47356 * 300.00786 * 17 16 13 46 46 H 1.09007 * 109.46534 * 59.99983 * 17 16 13 47 47 H 0.96998 * 119.99629 * 180.02562 * 21 20 18 48 48 H 1.09001 * 109.46203 * 301.72736 * 26 12 11 49 49 H 1.09001 * 109.46374 * 181.75535 * 26 12 11 50 50 H 1.08993 * 109.50402 * 180.87938 * 27 26 12 51 51 H 1.09008 * 109.53178 * 60.78723 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1962 0.0000 4 6 3.5809 1.1969 0.0005 5 6 4.2752 0.0009 0.0005 6 6 3.5886 -1.1976 -0.0005 7 6 2.2012 -1.2009 -0.0062 8 8 1.5234 -2.3788 -0.0127 9 6 2.2984 -3.5740 0.1021 10 6 2.8107 -3.9865 -1.2805 11 6 3.5869 -5.3000 -1.1604 12 7 2.7095 -6.3417 -0.6113 13 6 3.3803 -7.6486 -0.6107 14 1 2.7506 -8.3800 -0.1040 15 6 4.7191 -7.5343 0.1208 16 6 3.6238 -8.0975 -2.0530 17 6 2.2817 -8.2721 -2.7664 18 6 2.5215 -8.7136 -4.1871 19 1 3.5305 -8.8558 -4.5453 20 6 1.4530 -8.9370 -5.0294 21 7 1.6624 -9.3227 -6.2691 22 14 -0.2919 -8.6917 -4.4096 23 1 -0.7116 -7.2884 -4.6546 24 1 -1.2068 -9.6145 -5.1283 25 1 -0.3447 -8.9770 -2.9533 26 6 2.2443 -5.9884 0.7360 27 6 1.4266 -4.6962 0.6722 28 1 -0.3633 0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5139 31 1 1.6584 2.1316 -0.0004 32 1 4.1195 2.1330 0.0010 33 1 5.3552 0.0041 0.0014 34 1 4.1314 -2.1313 -0.0001 35 1 3.1445 -3.3969 0.7662 36 1 1.9658 -4.1246 -1.9553 37 1 3.4669 -3.2095 -1.6723 38 1 4.4401 -5.1572 -0.4972 39 1 3.9398 -5.6046 -2.1457 40 1 5.3488 -6.8030 -0.3859 41 1 4.5456 -7.2145 1.1483 42 1 5.2171 -8.5039 0.1209 43 1 4.2163 -7.3445 -2.5728 44 1 4.1611 -9.0459 -2.0525 45 1 1.6892 -9.0251 -2.2467 46 1 1.7444 -7.3237 -2.7668 47 1 0.9107 -9.4795 -6.8617 48 1 3.1038 -5.8423 1.3902 49 1 1.6221 -6.7929 1.1280 50 1 1.0947 -4.4259 1.6745 51 1 0.5590 -4.8453 0.0294 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172494318.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:35:28 Heat of formation + Delta-G solvation = -43.324967 kcal Electronic energy + Delta-G solvation = -27261.908380 eV Core-core repulsion = 23738.943043 eV Total energy + Delta-G solvation = -3522.965337 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.57953 -40.23437 -38.46162 -36.13415 -34.75323 -33.68267 -32.40474 -31.94989 -30.91380 -30.08643 -27.66293 -27.19853 -25.50872 -24.32170 -23.29657 -22.57618 -22.39292 -21.23828 -20.20982 -19.02959 -18.80809 -17.51836 -16.81762 -16.57277 -16.40806 -16.29002 -15.88632 -15.51739 -15.35718 -15.01498 -14.90061 -14.65409 -14.34902 -14.22340 -14.06093 -13.93445 -13.59683 -13.47315 -13.28983 -13.15903 -13.06859 -12.88015 -12.82141 -12.62893 -12.32289 -12.27445 -12.14311 -11.85348 -11.76644 -11.63842 -11.49377 -11.46671 -11.35731 -11.19571 -10.96420 -10.72249 -9.74988 -9.06049 -9.03463 -8.26982 -6.28521 0.38339 0.50987 1.36656 1.37372 1.50979 2.20127 2.38518 2.82080 2.97040 3.09909 3.65017 3.70678 3.85909 3.92148 3.97890 3.99211 4.15507 4.21224 4.24352 4.30721 4.36618 4.39794 4.42309 4.49273 4.58233 4.63491 4.71295 4.73911 4.77943 4.79862 4.82484 4.86880 4.92969 4.97837 4.98209 5.02381 5.12919 5.13783 5.23456 5.26522 5.32115 5.40199 5.44668 5.55124 5.60785 5.61477 5.71219 5.76441 5.92393 6.25295 6.31641 6.34634 6.50240 6.80479 7.35971 8.90190 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.014204 B = 0.003191 C = 0.002928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1970.751927 B = 8773.374538 C = 9561.205074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.140 4.140 3 C -0.089 4.089 4 C -0.161 4.161 5 C -0.093 4.093 6 C -0.217 4.217 7 C 0.109 3.891 8 O -0.320 6.320 9 C 0.094 3.906 10 C -0.135 4.135 11 C 0.061 3.939 12 N -0.547 5.547 13 C 0.087 3.913 14 H 0.081 0.919 15 C -0.175 4.175 16 C -0.088 4.088 17 C 0.004 3.996 18 C -0.527 4.527 19 H 0.028 0.972 20 C 0.002 3.998 21 N -0.956 5.956 22 Si 0.951 3.049 23 H -0.273 1.273 24 H -0.285 1.285 25 H -0.247 1.247 26 C 0.062 3.938 27 C -0.106 4.106 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.083 0.917 31 H 0.149 0.851 32 H 0.146 0.854 33 H 0.143 0.857 34 H 0.133 0.867 35 H 0.082 0.918 36 H 0.056 0.944 37 H 0.074 0.926 38 H 0.053 0.947 39 H 0.066 0.934 40 H 0.057 0.943 41 H 0.069 0.931 42 H 0.064 0.936 43 H 0.045 0.955 44 H 0.051 0.949 45 H 0.009 0.991 46 H 0.022 0.978 47 H 0.264 0.736 48 H 0.052 0.948 49 H 0.087 0.913 50 H 0.091 0.909 51 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.025 20.341 21.116 29.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.141 4.141 3 C -0.107 4.107 4 C -0.179 4.179 5 C -0.111 4.111 6 C -0.236 4.236 7 C 0.064 3.936 8 O -0.234 6.234 9 C 0.038 3.962 10 C -0.173 4.173 11 C -0.066 4.066 12 N -0.271 5.271 13 C -0.021 4.021 14 H 0.099 0.901 15 C -0.234 4.234 16 C -0.126 4.126 17 C -0.034 4.034 18 C -0.565 4.565 19 H 0.047 0.953 20 C -0.194 4.194 21 N -0.597 5.597 22 Si 0.775 3.225 23 H -0.198 1.198 24 H -0.211 1.211 25 H -0.170 1.170 26 C -0.066 4.066 27 C -0.144 4.144 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.101 0.899 31 H 0.167 0.833 32 H 0.164 0.836 33 H 0.161 0.839 34 H 0.151 0.849 35 H 0.100 0.900 36 H 0.075 0.925 37 H 0.093 0.907 38 H 0.071 0.929 39 H 0.084 0.916 40 H 0.076 0.924 41 H 0.088 0.912 42 H 0.083 0.917 43 H 0.064 0.936 44 H 0.069 0.931 45 H 0.027 0.973 46 H 0.041 0.959 47 H 0.073 0.927 48 H 0.070 0.930 49 H 0.106 0.894 50 H 0.109 0.891 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.316 20.206 20.655 28.988 hybrid contribution 0.254 -0.388 -0.347 0.579 sum 2.569 19.818 20.309 28.492 Atomic orbital electron populations 1.20595 0.89996 1.03038 1.02275 1.19628 0.97359 0.90799 1.06304 1.21211 0.94639 0.97070 0.97760 1.21392 0.94316 0.98932 1.03232 1.21263 1.00941 0.91672 0.97266 1.21480 0.92913 1.00389 1.08810 1.19165 0.91155 0.85964 0.97345 1.86099 1.36859 1.12641 1.87805 1.22511 0.94470 0.82686 0.96565 1.22093 1.00658 0.97138 0.97458 1.21977 0.94014 0.90326 1.00319 1.61996 1.40116 1.02134 1.22886 1.21689 0.94310 0.90451 0.95624 0.90066 1.22376 0.97622 1.02825 1.00585 1.21419 0.97524 0.99466 0.94218 1.19331 0.95433 0.95983 0.92612 1.21652 0.93095 1.44451 0.97336 0.95326 1.25983 1.04074 0.94513 0.94782 1.70078 1.32852 1.49432 1.07357 0.85640 0.78875 0.78170 0.79804 1.19823 1.21134 1.17045 1.22064 0.98656 0.96767 0.89074 1.21608 0.98578 0.92252 1.01976 0.91726 0.92255 0.89865 0.83298 0.83584 0.83929 0.84918 0.89996 0.92530 0.90732 0.92861 0.91601 0.92445 0.91212 0.91655 0.93595 0.93075 0.97298 0.95917 0.92722 0.92981 0.89428 0.89057 0.91730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.88 9.79 71.23 0.70 -1.18 16 2 C -0.14 -2.96 5.89 -19.77 -0.12 -3.08 16 3 C -0.09 -1.50 9.70 22.26 0.22 -1.28 16 4 C -0.16 -2.51 10.04 22.29 0.22 -2.29 16 5 C -0.09 -1.60 10.04 22.26 0.22 -1.38 16 6 C -0.22 -4.50 8.25 22.36 0.18 -4.31 16 7 C 0.11 2.58 6.57 22.50 0.15 2.73 16 8 O -0.32 -8.17 8.86 -92.48 -0.82 -8.99 16 9 C 0.09 2.11 2.18 30.67 0.07 2.18 16 10 C -0.14 -3.54 5.37 30.65 0.16 -3.37 16 11 C 0.06 1.64 4.54 86.33 0.39 2.03 16 12 N -0.55 -15.41 3.95 -871.10 -3.44 -18.85 16 13 C 0.09 2.53 2.34 44.91 0.10 2.64 16 14 H 0.08 2.33 7.98 -2.39 -0.02 2.31 16 15 C -0.18 -3.91 8.45 71.98 0.61 -3.30 16 16 C -0.09 -3.42 4.51 30.59 0.14 -3.28 16 17 C 0.00 0.19 3.91 29.84 0.12 0.30 16 18 C -0.53 -31.50 9.66 25.60 0.25 -31.25 16 19 H 0.03 1.87 7.99 -2.91 -0.02 1.84 16 20 C 0.00 0.14 5.47 84.66 0.46 0.61 16 21 N -0.96 -62.08 13.96 21.45 0.30 -61.78 16 22 Si 0.95 46.94 27.47 68.60 1.88 48.82 16 23 H -0.27 -13.17 7.11 99.48 0.71 -12.47 16 24 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 25 H -0.25 -11.40 6.54 99.48 0.65 -10.75 16 26 C 0.06 1.33 5.13 86.33 0.44 1.77 16 27 C -0.11 -2.30 5.75 30.65 0.18 -2.13 16 28 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.06 1.20 7.54 -2.39 -0.02 1.18 16 30 H 0.08 1.12 8.09 -2.38 -0.02 1.10 16 31 H 0.15 1.70 8.06 -2.91 -0.02 1.67 16 32 H 0.15 1.48 8.06 -2.91 -0.02 1.46 16 33 H 0.14 1.76 8.06 -2.91 -0.02 1.73 16 34 H 0.13 2.52 5.39 -2.91 -0.02 2.50 16 35 H 0.08 1.60 6.34 -2.39 -0.02 1.59 16 36 H 0.06 1.80 8.14 -2.38 -0.02 1.78 16 37 H 0.07 1.83 6.85 -2.39 -0.02 1.81 16 38 H 0.05 1.18 6.58 -2.39 -0.02 1.17 16 39 H 0.07 2.09 6.17 -2.39 -0.01 2.08 16 40 H 0.06 1.28 6.46 -2.39 -0.02 1.26 16 41 H 0.07 1.27 6.82 -2.38 -0.02 1.26 16 42 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 43 H 0.05 1.82 6.32 -2.39 -0.02 1.81 16 44 H 0.05 1.99 8.14 -2.38 -0.02 1.97 16 45 H 0.01 0.42 7.20 -2.39 -0.02 0.40 16 46 H 0.02 1.11 7.10 -2.38 -0.02 1.09 16 47 H 0.26 16.02 8.31 -92.71 -0.77 15.25 16 48 H 0.05 0.93 6.88 -2.39 -0.02 0.91 16 49 H 0.09 1.79 8.01 -2.39 -0.02 1.77 16 50 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 51 H 0.06 1.67 8.14 -2.38 -0.02 1.65 16 Total: -1.00 -71.08 385.64 3.26 -67.82 By element: Atomic # 1 Polarization: 16.74 SS G_CDS: 0.83 Total: 17.58 kcal Atomic # 6 Polarization: -49.10 SS G_CDS: 4.50 Total: -44.60 kcal Atomic # 7 Polarization: -77.49 SS G_CDS: -3.14 Total: -80.63 kcal Atomic # 8 Polarization: -8.17 SS G_CDS: -0.82 Total: -8.99 kcal Atomic # 14 Polarization: 46.94 SS G_CDS: 1.88 Total: 48.82 kcal Total: -71.08 3.26 -67.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172494318.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.496 kcal (2) G-P(sol) polarization free energy of solvation -71.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds