Wall clock time and date at job start Tue Mar 31 2020 11:15:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38236 * 120.00352 * 2 1 4 4 C 1.38236 * 120.00224 * 179.97438 * 3 2 1 5 5 C 1.38235 * 119.99561 * 359.97409 * 4 3 2 6 6 C 1.50704 * 119.99569 * 180.02562 * 5 4 3 7 7 C 1.53004 * 109.54198 * 270.10779 * 6 5 4 8 8 C 1.53097 * 109.50853 * 150.00185 * 6 5 4 9 9 N 1.47008 * 109.26200 * 183.21392 * 8 6 5 10 10 C 1.46903 * 111.00256 * 182.38927 * 9 8 6 11 11 H 1.08999 * 109.46809 * 55.00381 * 10 9 8 12 12 C 1.52997 * 109.47071 * 295.00454 * 10 9 8 13 13 C 1.53000 * 109.46983 * 175.00199 * 10 9 8 14 14 C 1.53001 * 109.47355 * 295.00076 * 13 10 9 15 15 C 1.50694 * 109.47168 * 180.02562 * 14 13 10 16 16 H 1.08000 * 120.00563 * 0.02562 * 15 14 13 17 17 C 1.37885 * 119.99902 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99913 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99766 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46985 * 179.97438 * 19 17 15 21 21 H 1.48494 * 109.47276 * 299.99832 * 19 17 15 22 22 H 1.48498 * 109.47150 * 60.00043 * 19 17 15 23 23 C 1.47022 * 110.75146 * 58.61650 * 9 8 6 24 24 C 1.53105 * 109.25542 * 301.38465 * 23 9 8 25 25 O 1.43009 * 109.50618 * 30.21884 * 6 5 4 26 26 C 1.38234 * 120.00466 * 0.27674 * 5 4 3 27 27 C 1.38230 * 119.99605 * 359.51756 * 26 5 4 28 28 H 1.08999 * 109.47292 * 90.00016 * 1 2 3 29 29 H 1.09002 * 109.47307 * 210.00043 * 1 2 3 30 30 H 1.09007 * 109.47146 * 330.00176 * 1 2 3 31 31 H 1.07996 * 119.99863 * 359.97438 * 3 2 1 32 32 H 1.07995 * 119.99719 * 179.97438 * 4 3 2 33 33 H 1.08999 * 109.47161 * 299.89415 * 7 6 5 34 34 H 1.09001 * 109.46756 * 59.89254 * 7 6 5 35 35 H 1.09002 * 109.46870 * 179.88857 * 7 6 5 36 36 H 1.09005 * 109.50641 * 63.27723 * 8 6 5 37 37 H 1.09007 * 109.53985 * 303.17377 * 8 6 5 38 38 H 1.08999 * 109.47245 * 299.99661 * 12 10 9 39 39 H 1.08998 * 109.47424 * 59.99634 * 12 10 9 40 40 H 1.08996 * 109.47106 * 180.02562 * 12 10 9 41 41 H 1.09002 * 109.46807 * 175.00367 * 13 10 9 42 42 H 1.08998 * 109.47285 * 54.99969 * 13 10 9 43 43 H 1.09007 * 109.46922 * 59.99890 * 14 13 10 44 44 H 1.09003 * 109.46836 * 300.00646 * 14 13 10 45 45 H 0.97001 * 119.99646 * 179.97438 * 18 17 15 46 46 H 1.09004 * 109.50438 * 61.31822 * 23 9 8 47 47 H 1.08997 * 109.50627 * 181.44997 * 23 9 8 48 48 H 1.08993 * 109.50519 * 296.91231 * 24 23 9 49 49 H 1.08994 * 109.53956 * 176.80128 * 24 23 9 50 50 H 1.08004 * 119.99733 * 179.72452 * 26 5 4 51 51 H 1.08006 * 119.99711 * 180.27676 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1971 0.0005 5 6 4.2716 -0.0001 0.0016 6 6 5.7786 -0.0002 0.0028 7 6 6.2915 0.0019 -1.4387 8 6 6.2893 -1.2496 0.7252 9 7 7.7573 -1.2059 0.7909 10 6 8.2921 -2.4167 1.4281 11 1 7.9212 -3.2973 0.9036 12 6 7.8412 -2.4657 2.8893 13 6 9.8207 -2.3926 1.3665 14 6 10.2736 -2.4694 -0.0929 15 6 11.7792 -2.4463 -0.1534 16 1 12.3555 -2.3836 0.7578 17 6 12.4211 -2.5052 -1.3723 18 7 11.7194 -2.5820 -2.4820 19 14 14.2874 -2.4758 -1.4474 20 1 14.7270 -2.5505 -2.8639 21 1 14.7875 -1.2169 -0.8390 22 1 14.8312 -3.6374 -0.6990 23 6 8.2115 0.0034 1.4931 24 6 7.6815 1.2403 0.7628 25 8 6.2556 1.1650 0.6811 26 6 3.5804 -1.1973 -0.0036 27 6 2.1981 -1.1972 0.0001 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5138 31 1 1.6582 2.1324 -0.0004 32 1 4.1205 2.1324 0.0001 33 1 5.9308 -0.8883 -1.9540 34 1 5.9276 0.8917 -1.9525 35 1 7.3816 0.0039 -1.4365 36 1 5.9757 -2.1395 0.1793 37 1 5.8804 -1.2794 1.7353 38 1 8.2121 -1.5852 3.4137 39 1 6.7522 -2.4828 2.9331 40 1 8.2384 -3.3639 3.3621 41 1 10.2199 -3.2451 1.9161 42 1 10.1878 -1.4684 1.8127 43 1 9.8744 -1.6169 -0.6426 44 1 9.9065 -3.3936 -0.5391 45 1 12.1711 -2.6231 -3.3395 46 1 7.8333 -0.0057 2.5154 47 1 9.3011 0.0282 1.5075 48 1 8.1023 1.2778 -0.2419 49 1 7.9677 2.1378 1.3111 50 1 4.1205 -2.1326 -0.0073 51 1 1.6581 -2.1325 0.0006 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172499085.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:58 Heat of formation + Delta-G solvation = -27.115226 kcal Electronic energy + Delta-G solvation = -27661.731252 eV Core-core repulsion = 24139.468822 eV Total energy + Delta-G solvation = -3522.262430 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.53434 -38.97957 -36.86847 -34.06343 -33.32645 -31.72453 -31.00842 -30.88879 -29.44006 -28.09087 -26.81481 -25.67812 -24.60073 -23.59394 -22.43506 -21.68718 -20.96471 -19.51579 -18.72204 -17.10798 -16.31290 -16.07518 -15.54340 -15.37193 -14.90388 -14.88119 -14.47896 -14.37740 -14.27445 -13.92596 -13.78305 -13.50394 -13.29826 -12.81674 -12.67565 -12.41646 -12.35662 -12.23238 -12.07466 -11.81044 -11.65726 -11.47650 -11.45215 -11.27455 -11.02158 -10.95611 -10.87701 -10.83478 -10.48335 -10.20949 -10.02387 -9.63681 -9.46184 -9.22103 -8.96409 -8.91888 -8.53751 -8.25957 -7.82308 -5.91092 -3.92732 1.24129 1.36736 3.36369 3.41059 3.43238 3.61336 3.85252 4.10305 4.51529 4.67095 4.74577 4.86174 4.98598 5.00036 5.12615 5.21055 5.26085 5.32033 5.37363 5.42871 5.43870 5.44329 5.51861 5.60117 5.60615 5.65264 5.68523 5.74041 5.80896 5.93409 5.96945 5.99964 6.04928 6.10152 6.15001 6.22072 6.27213 6.35785 6.38567 6.50974 6.56896 6.58788 6.64571 6.83441 6.94603 7.23367 7.32104 7.44744 7.47963 7.81706 8.02891 8.17897 8.53738 9.15814 9.70116 11.19666 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.021536 B = 0.002905 C = 0.002846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.825263 B = 9636.377434 C = 9836.535415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.093 4.093 3 C -0.124 4.124 4 C -0.090 4.090 5 C -0.071 4.071 6 C 0.162 3.838 7 C -0.163 4.163 8 C 0.033 3.967 9 N -0.512 5.512 10 C 0.082 3.918 11 H 0.078 0.922 12 C -0.185 4.185 13 C -0.104 4.104 14 C 0.031 3.969 15 C -0.521 4.521 16 H 0.050 0.950 17 C 0.058 3.942 18 N -0.893 5.893 19 Si 0.887 3.113 20 H -0.288 1.288 21 H -0.278 1.278 22 H -0.279 1.279 23 C 0.014 3.986 24 C 0.061 3.939 25 O -0.378 6.378 26 C -0.108 4.108 27 C -0.122 4.122 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.119 0.881 32 H 0.128 0.872 33 H 0.064 0.936 34 H 0.054 0.946 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.040 0.960 38 H 0.054 0.946 39 H 0.047 0.953 40 H 0.059 0.941 41 H 0.049 0.951 42 H 0.049 0.951 43 H 0.030 0.970 44 H 0.009 0.991 45 H 0.259 0.741 46 H 0.038 0.962 47 H 0.097 0.903 48 H 0.066 0.934 49 H 0.094 0.906 50 H 0.125 0.875 51 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.261 6.181 6.518 22.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.093 4.093 3 C -0.142 4.142 4 C -0.108 4.108 5 C -0.071 4.071 6 C 0.123 3.877 7 C -0.221 4.221 8 C -0.095 4.095 9 N -0.236 5.236 10 C -0.026 4.026 11 H 0.097 0.903 12 C -0.244 4.244 13 C -0.141 4.141 14 C -0.006 4.006 15 C -0.559 4.559 16 H 0.068 0.932 17 C -0.143 4.143 18 N -0.533 5.533 19 Si 0.715 3.285 20 H -0.214 1.214 21 H -0.204 1.204 22 H -0.204 1.204 23 C -0.114 4.114 24 C -0.015 4.015 25 O -0.297 6.297 26 C -0.126 4.126 27 C -0.140 4.140 28 H 0.087 0.913 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.137 0.863 32 H 0.145 0.855 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.104 0.896 36 H 0.100 0.900 37 H 0.058 0.942 38 H 0.073 0.927 39 H 0.066 0.934 40 H 0.078 0.922 41 H 0.068 0.932 42 H 0.067 0.933 43 H 0.049 0.951 44 H 0.028 0.972 45 H 0.068 0.932 46 H 0.056 0.944 47 H 0.115 0.885 48 H 0.085 0.915 49 H 0.112 0.888 50 H 0.143 0.857 51 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -20.174 6.323 5.909 21.952 hybrid contribution 1.025 -0.302 0.659 1.255 sum -19.149 6.021 6.567 21.121 Atomic orbital electron populations 1.20774 0.91438 1.02567 1.02176 1.19915 0.95913 0.93330 1.00099 1.21016 0.94141 0.97388 1.01699 1.20983 0.93643 0.98167 0.98053 1.19560 0.93442 0.93633 1.00499 1.20140 0.89309 0.85513 0.92760 1.22264 1.03757 1.01919 0.94136 1.22759 0.89461 0.98095 0.99229 1.62367 1.06791 1.02103 1.52290 1.21886 0.97744 0.91937 0.91045 0.90347 1.22499 1.00482 1.02135 0.99297 1.21754 0.90372 1.00082 1.01933 1.18984 0.94739 0.97611 0.89251 1.21290 0.92476 1.50101 0.92047 0.93202 1.24991 0.97784 0.95615 0.95932 1.69966 1.35040 1.50830 0.97432 0.86754 0.86474 0.78476 0.76810 1.21390 1.20386 1.20429 1.22847 1.02327 0.90568 0.95681 1.22718 0.80394 0.97389 1.01045 1.87941 1.21613 1.42519 1.77620 1.21029 0.94133 0.97587 0.99879 1.20953 0.93909 0.97472 1.01632 0.91304 0.91691 0.91718 0.86262 0.85453 0.91676 0.92678 0.89649 0.89959 0.94167 0.92652 0.93408 0.92225 0.93206 0.93275 0.95119 0.97250 0.93151 0.94394 0.88493 0.91534 0.88804 0.85706 0.86119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.81 10.01 36.00 0.36 -0.45 16 2 C -0.09 -0.93 5.88 -104.63 -0.62 -1.54 16 3 C -0.12 -1.31 9.70 -39.58 -0.38 -1.70 16 4 C -0.09 -1.10 9.35 -39.58 -0.37 -1.47 16 5 C -0.07 -0.92 4.84 -104.62 -0.51 -1.42 16 6 C 0.16 2.27 0.94 -91.72 -0.09 2.19 16 7 C -0.16 -2.38 8.16 37.16 0.30 -2.08 16 8 C 0.03 0.47 3.20 -3.72 -0.01 0.46 16 9 N -0.51 -8.33 3.54 -226.32 -0.80 -9.13 16 10 C 0.08 1.37 2.35 -67.71 -0.16 1.21 16 11 H 0.08 1.36 8.12 -51.93 -0.42 0.94 16 12 C -0.19 -2.61 8.49 37.16 0.32 -2.30 16 13 C -0.10 -2.09 4.45 -26.73 -0.12 -2.21 16 14 C 0.03 0.80 4.86 -27.89 -0.14 0.66 16 15 C -0.52 -14.72 9.11 -34.44 -0.31 -15.04 16 16 H 0.05 1.37 7.74 -52.49 -0.41 0.97 16 17 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 18 N -0.89 -26.96 13.29 55.43 0.74 -26.23 16 19 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 20 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 23 C 0.01 0.21 4.87 -3.70 -0.02 0.19 16 24 C 0.06 0.86 6.61 37.21 0.25 1.11 16 25 O -0.38 -5.53 9.28 -35.23 -0.33 -5.85 16 26 C -0.11 -1.27 9.14 -39.59 -0.36 -1.63 16 27 C -0.12 -1.27 9.70 -39.58 -0.38 -1.65 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.41 8.09 -51.93 -0.42 -0.01 16 30 H 0.06 0.41 8.09 -51.93 -0.42 -0.01 16 31 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 32 H 0.13 1.53 7.49 -52.49 -0.39 1.14 16 33 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.08 1.42 6.12 -51.93 -0.32 1.11 16 36 H 0.08 1.14 6.70 -51.93 -0.35 0.79 16 37 H 0.04 0.58 6.56 -51.93 -0.34 0.24 16 38 H 0.05 0.77 6.44 -51.93 -0.33 0.44 16 39 H 0.05 0.63 6.57 -51.93 -0.34 0.29 16 40 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 41 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.05 0.97 6.14 -51.93 -0.32 0.65 16 43 H 0.03 0.83 7.75 -51.92 -0.40 0.43 16 44 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 45 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 46 H 0.04 0.56 6.42 -51.93 -0.33 0.22 16 47 H 0.10 1.60 6.12 -51.93 -0.32 1.28 16 48 H 0.07 1.00 6.49 -51.93 -0.34 0.66 16 49 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 50 H 0.13 1.35 6.26 -52.48 -0.33 1.02 16 51 H 0.12 1.01 8.06 -52.48 -0.42 0.59 16 LS Contribution 386.59 15.07 5.83 5.83 Total: -1.00 -30.62 386.59 -10.64 -41.26 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -8.72 Total: 1.45 kcal Atomic # 6 Polarization: -21.77 SS G_CDS: -2.34 Total: -24.10 kcal Atomic # 7 Polarization: -35.30 SS G_CDS: -0.06 Total: -35.36 kcal Atomic # 8 Polarization: -5.53 SS G_CDS: -0.33 Total: -5.85 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -30.62 -10.64 -41.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172499085.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.146 kcal (2) G-P(sol) polarization free energy of solvation -30.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds