Wall clock time and date at job start Tue Mar 31 2020 11:15:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38236 * 120.00352 * 2 1 4 4 C 1.38236 * 120.00224 * 179.97438 * 3 2 1 5 5 C 1.38235 * 119.99561 * 359.97409 * 4 3 2 6 6 C 1.50704 * 119.99569 * 180.02562 * 5 4 3 7 7 C 1.53004 * 109.54198 * 270.10779 * 6 5 4 8 8 C 1.53097 * 109.50853 * 150.00185 * 6 5 4 9 9 N 1.47008 * 109.26200 * 183.21392 * 8 6 5 10 10 C 1.46903 * 111.00256 * 182.38927 * 9 8 6 11 11 H 1.08999 * 109.46809 * 55.00381 * 10 9 8 12 12 C 1.52997 * 109.47071 * 295.00454 * 10 9 8 13 13 C 1.53000 * 109.46983 * 175.00199 * 10 9 8 14 14 C 1.53001 * 109.47355 * 295.00076 * 13 10 9 15 15 C 1.50694 * 109.47168 * 180.02562 * 14 13 10 16 16 H 1.08000 * 120.00563 * 0.02562 * 15 14 13 17 17 C 1.37885 * 119.99902 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99913 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99766 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46985 * 179.97438 * 19 17 15 21 21 H 1.48494 * 109.47276 * 299.99832 * 19 17 15 22 22 H 1.48498 * 109.47150 * 60.00043 * 19 17 15 23 23 C 1.47022 * 110.75146 * 58.61650 * 9 8 6 24 24 C 1.53105 * 109.25542 * 301.38465 * 23 9 8 25 25 O 1.43009 * 109.50618 * 30.21884 * 6 5 4 26 26 C 1.38234 * 120.00466 * 0.27674 * 5 4 3 27 27 C 1.38230 * 119.99605 * 359.51756 * 26 5 4 28 28 H 1.08999 * 109.47292 * 90.00016 * 1 2 3 29 29 H 1.09002 * 109.47307 * 210.00043 * 1 2 3 30 30 H 1.09007 * 109.47146 * 330.00176 * 1 2 3 31 31 H 1.07996 * 119.99863 * 359.97438 * 3 2 1 32 32 H 1.07995 * 119.99719 * 179.97438 * 4 3 2 33 33 H 1.08999 * 109.47161 * 299.89415 * 7 6 5 34 34 H 1.09001 * 109.46756 * 59.89254 * 7 6 5 35 35 H 1.09002 * 109.46870 * 179.88857 * 7 6 5 36 36 H 1.09005 * 109.50641 * 63.27723 * 8 6 5 37 37 H 1.09007 * 109.53985 * 303.17377 * 8 6 5 38 38 H 1.08999 * 109.47245 * 299.99661 * 12 10 9 39 39 H 1.08998 * 109.47424 * 59.99634 * 12 10 9 40 40 H 1.08996 * 109.47106 * 180.02562 * 12 10 9 41 41 H 1.09002 * 109.46807 * 175.00367 * 13 10 9 42 42 H 1.08998 * 109.47285 * 54.99969 * 13 10 9 43 43 H 1.09007 * 109.46922 * 59.99890 * 14 13 10 44 44 H 1.09003 * 109.46836 * 300.00646 * 14 13 10 45 45 H 0.97001 * 119.99646 * 179.97438 * 18 17 15 46 46 H 1.09004 * 109.50438 * 61.31822 * 23 9 8 47 47 H 1.08997 * 109.50627 * 181.44997 * 23 9 8 48 48 H 1.08993 * 109.50519 * 296.91231 * 24 23 9 49 49 H 1.08994 * 109.53956 * 176.80128 * 24 23 9 50 50 H 1.08004 * 119.99733 * 179.72452 * 26 5 4 51 51 H 1.08006 * 119.99711 * 180.27676 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1971 0.0005 5 6 4.2716 -0.0001 0.0016 6 6 5.7786 -0.0002 0.0028 7 6 6.2915 0.0019 -1.4387 8 6 6.2893 -1.2496 0.7252 9 7 7.7573 -1.2059 0.7909 10 6 8.2921 -2.4167 1.4281 11 1 7.9212 -3.2973 0.9036 12 6 7.8412 -2.4657 2.8893 13 6 9.8207 -2.3926 1.3665 14 6 10.2736 -2.4694 -0.0929 15 6 11.7792 -2.4463 -0.1534 16 1 12.3555 -2.3836 0.7578 17 6 12.4211 -2.5052 -1.3723 18 7 11.7194 -2.5820 -2.4820 19 14 14.2874 -2.4758 -1.4474 20 1 14.7270 -2.5505 -2.8639 21 1 14.7875 -1.2169 -0.8390 22 1 14.8312 -3.6374 -0.6990 23 6 8.2115 0.0034 1.4931 24 6 7.6815 1.2403 0.7628 25 8 6.2556 1.1650 0.6811 26 6 3.5804 -1.1973 -0.0036 27 6 2.1981 -1.1972 0.0001 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5138 31 1 1.6582 2.1324 -0.0004 32 1 4.1205 2.1324 0.0001 33 1 5.9308 -0.8883 -1.9540 34 1 5.9276 0.8917 -1.9525 35 1 7.3816 0.0039 -1.4365 36 1 5.9757 -2.1395 0.1793 37 1 5.8804 -1.2794 1.7353 38 1 8.2121 -1.5852 3.4137 39 1 6.7522 -2.4828 2.9331 40 1 8.2384 -3.3639 3.3621 41 1 10.2199 -3.2451 1.9161 42 1 10.1878 -1.4684 1.8127 43 1 9.8744 -1.6169 -0.6426 44 1 9.9065 -3.3936 -0.5391 45 1 12.1711 -2.6231 -3.3395 46 1 7.8333 -0.0057 2.5154 47 1 9.3011 0.0282 1.5075 48 1 8.1023 1.2778 -0.2419 49 1 7.9677 2.1378 1.3111 50 1 4.1205 -2.1326 -0.0073 51 1 1.6581 -2.1325 0.0006 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172499085.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:57 Heat of formation + Delta-G solvation = -42.746831 kcal Electronic energy + Delta-G solvation = -27662.409089 eV Core-core repulsion = 24139.468822 eV Total energy + Delta-G solvation = -3522.940267 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.63578 -39.94109 -38.15620 -35.35395 -35.00501 -33.28092 -32.01871 -31.75901 -31.01937 -29.36008 -27.65069 -27.24560 -26.11915 -24.70633 -23.39174 -23.14022 -22.26473 -20.79104 -19.96086 -18.40593 -18.11963 -17.36648 -16.73595 -16.50628 -16.30190 -16.04821 -15.86550 -15.51592 -15.36026 -14.98535 -14.65283 -14.54746 -14.48016 -14.32472 -14.04670 -13.84447 -13.45662 -13.25999 -13.11852 -13.06655 -12.98846 -12.83681 -12.76815 -12.65041 -12.58596 -12.37032 -12.10892 -12.03300 -11.83610 -11.73267 -11.43056 -11.27713 -11.11072 -10.97487 -10.58921 -10.47458 -9.80809 -9.40130 -9.08109 -8.12991 -6.23231 0.38639 0.52275 1.40052 1.42652 1.50337 2.43689 2.63632 2.82997 2.93699 3.19438 3.67864 3.83522 3.93583 4.00519 4.01887 4.08270 4.12585 4.18285 4.23119 4.30241 4.38661 4.46369 4.52508 4.55164 4.61783 4.62824 4.72469 4.77514 4.82517 4.86173 4.88048 4.89055 4.95217 4.96500 4.99345 5.07354 5.08744 5.20663 5.27167 5.29148 5.34168 5.43785 5.53796 5.59675 5.66658 5.72602 5.88148 6.01943 6.12397 6.12875 6.20289 6.26612 6.34856 6.96205 7.44765 8.97808 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.021536 B = 0.002905 C = 0.002846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.825263 B = 9636.377434 C = 9836.535415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.093 4.093 3 C -0.128 4.128 4 C -0.103 4.103 5 C -0.090 4.090 6 C 0.166 3.834 7 C -0.157 4.157 8 C 0.040 3.960 9 N -0.533 5.533 10 C 0.087 3.913 11 H 0.069 0.931 12 C -0.173 4.173 13 C -0.092 4.092 14 C 0.043 3.957 15 C -0.542 4.542 16 H 0.055 0.945 17 C 0.001 3.999 18 N -0.931 5.931 19 Si 0.958 3.042 20 H -0.285 1.285 21 H -0.268 1.268 22 H -0.269 1.269 23 C 0.018 3.982 24 C 0.063 3.937 25 O -0.381 6.381 26 C -0.118 4.118 27 C -0.126 4.126 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.140 0.860 32 H 0.123 0.877 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.058 0.942 36 H 0.083 0.917 37 H 0.045 0.955 38 H 0.058 0.942 39 H 0.060 0.940 40 H 0.068 0.932 41 H 0.052 0.948 42 H 0.053 0.947 43 H 0.004 0.996 44 H -0.022 1.022 45 H 0.261 0.739 46 H 0.049 0.951 47 H 0.081 0.919 48 H 0.050 0.950 49 H 0.119 0.881 50 H 0.128 0.872 51 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.474 6.471 7.890 23.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.093 4.093 3 C -0.146 4.146 4 C -0.121 4.121 5 C -0.090 4.090 6 C 0.126 3.874 7 C -0.214 4.214 8 C -0.088 4.088 9 N -0.257 5.257 10 C -0.021 4.021 11 H 0.087 0.913 12 C -0.232 4.232 13 C -0.129 4.129 14 C 0.006 3.994 15 C -0.580 4.580 16 H 0.073 0.927 17 C -0.197 4.197 18 N -0.571 5.571 19 Si 0.783 3.217 20 H -0.210 1.210 21 H -0.193 1.193 22 H -0.194 1.194 23 C -0.110 4.110 24 C -0.014 4.014 25 O -0.300 6.300 26 C -0.136 4.136 27 C -0.144 4.144 28 H 0.097 0.903 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.158 0.842 32 H 0.141 0.859 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.102 0.898 37 H 0.063 0.937 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.087 0.913 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.023 0.977 44 H -0.004 1.004 45 H 0.069 0.931 46 H 0.067 0.933 47 H 0.099 0.901 48 H 0.068 0.932 49 H 0.137 0.863 50 H 0.146 0.854 51 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -21.393 6.616 7.299 23.552 hybrid contribution 1.338 -0.392 0.184 1.406 sum -20.055 6.224 7.483 22.292 Atomic orbital electron populations 1.20832 0.89189 1.03692 1.03100 1.20308 0.97607 0.92870 0.98530 1.21283 0.93559 0.98709 1.01053 1.21055 0.94585 0.97713 0.98797 1.19522 0.92506 0.94560 1.02457 1.20110 0.90371 0.85084 0.91800 1.22178 1.01878 1.02124 0.95267 1.22729 0.88077 0.98501 0.99513 1.62296 1.08161 1.02248 1.52998 1.21695 0.95259 0.91997 0.93163 0.91311 1.22356 1.01280 1.02773 0.96806 1.21553 0.93068 1.00321 0.97993 1.18781 0.93621 0.94703 0.92344 1.21750 0.93956 1.49868 0.92405 0.92698 1.25913 1.03137 0.95098 0.95531 1.70112 1.37216 1.51735 0.98035 0.85618 0.80060 0.79050 0.76996 1.21047 1.19281 1.19372 1.22799 1.01333 0.90587 0.96308 1.22754 0.80242 0.97954 1.00419 1.87943 1.21629 1.42839 1.77581 1.21156 0.94979 0.97281 1.00172 1.21254 0.93456 0.98747 1.00907 0.90349 0.90602 0.90646 0.84233 0.85928 0.91757 0.92146 0.92319 0.89824 0.93693 0.92290 0.92110 0.91275 0.92938 0.92870 0.97730 1.00403 0.93077 0.93262 0.90117 0.93166 0.86326 0.85424 0.84012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.26 10.01 71.23 0.71 -0.55 16 2 C -0.09 -1.65 5.88 -19.87 -0.12 -1.77 16 3 C -0.13 -2.49 9.70 22.27 0.22 -2.27 16 4 C -0.10 -2.45 9.35 22.27 0.21 -2.24 16 5 C -0.09 -2.29 4.84 -19.86 -0.10 -2.39 16 6 C 0.17 4.69 0.94 -11.50 -0.01 4.68 16 7 C -0.16 -4.79 8.16 71.98 0.59 -4.21 16 8 C 0.04 1.15 3.20 86.32 0.28 1.42 16 9 N -0.53 -17.69 3.54 -869.94 -3.08 -20.77 16 10 C 0.09 2.93 2.35 44.91 0.11 3.03 16 11 H 0.07 2.43 8.12 -2.39 -0.02 2.41 16 12 C -0.17 -4.61 8.49 71.98 0.61 -4.00 16 13 C -0.09 -3.74 4.45 30.59 0.14 -3.61 16 14 C 0.04 2.27 4.86 29.85 0.15 2.41 16 15 C -0.54 -31.21 9.11 25.60 0.23 -30.97 16 16 H 0.05 3.03 7.74 -2.91 -0.02 3.01 16 17 C 0.00 0.05 5.46 84.66 0.46 0.51 16 18 N -0.93 -57.68 13.29 21.45 0.28 -57.40 16 19 Si 0.96 44.98 29.54 68.60 2.03 47.01 16 20 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 21 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 22 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 23 C 0.02 0.54 4.87 86.31 0.42 0.96 16 24 C 0.06 1.78 6.61 72.02 0.48 2.26 16 25 O -0.38 -11.11 9.28 -148.98 -1.38 -12.50 16 26 C -0.12 -2.67 9.14 22.27 0.20 -2.46 16 27 C -0.13 -2.38 9.70 22.27 0.22 -2.17 16 28 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.08 0.71 8.09 -2.39 -0.02 0.69 16 30 H 0.07 0.71 8.09 -2.38 -0.02 0.69 16 31 H 0.14 2.04 8.06 -2.91 -0.02 2.02 16 32 H 0.12 2.93 7.49 -2.91 -0.02 2.91 16 33 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.06 2.09 6.12 -2.39 -0.01 2.08 16 36 H 0.08 2.35 6.70 -2.38 -0.02 2.33 16 37 H 0.04 1.26 6.56 -2.38 -0.02 1.24 16 38 H 0.06 1.53 6.44 -2.39 -0.02 1.52 16 39 H 0.06 1.47 6.57 -2.39 -0.02 1.46 16 40 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 42 H 0.05 2.12 6.14 -2.39 -0.01 2.10 16 43 H 0.00 0.25 7.75 -2.38 -0.02 0.23 16 44 H -0.02 -1.32 8.14 -2.39 -0.02 -1.34 16 45 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 46 H 0.05 1.39 6.42 -2.38 -0.02 1.37 16 47 H 0.08 2.71 6.12 -2.39 -0.01 2.69 16 48 H 0.05 1.58 6.49 -2.39 -0.02 1.56 16 49 H 0.12 2.72 8.14 -2.39 -0.02 2.70 16 50 H 0.13 2.70 6.26 -2.91 -0.02 2.69 16 51 H 0.14 2.01 8.06 -2.91 -0.02 1.99 16 Total: -1.00 -66.80 386.59 3.53 -63.27 By element: Atomic # 1 Polarization: 20.85 SS G_CDS: 0.89 Total: 21.74 kcal Atomic # 6 Polarization: -46.15 SS G_CDS: 4.79 Total: -41.36 kcal Atomic # 7 Polarization: -75.37 SS G_CDS: -2.79 Total: -78.16 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: -1.38 Total: -12.50 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -66.80 3.53 -63.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172499085.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.523 kcal (2) G-P(sol) polarization free energy of solvation -66.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds