Wall clock time and date at job start Tue Mar 31 2020 11:16:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38231 * 120.00030 * 2 1 4 4 C 1.38243 * 119.99780 * 179.97438 * 3 2 1 5 5 C 1.38227 * 120.00218 * 359.95136 * 4 3 2 6 6 C 1.50696 * 120.00273 * 180.02562 * 5 4 3 7 7 C 1.53005 * 109.50528 * 89.91262 * 6 5 4 8 8 C 1.53095 * 109.51062 * 210.00126 * 6 5 4 9 9 N 1.47019 * 109.26037 * 176.78474 * 8 6 5 10 10 C 1.46894 * 110.99912 * 177.61056 * 9 8 6 11 11 H 1.09002 * 109.47104 * 299.99725 * 10 9 8 12 12 C 1.52997 * 109.47515 * 59.99993 * 10 9 8 13 13 C 1.52999 * 109.46927 * 180.02562 * 10 9 8 14 14 C 1.52999 * 109.47451 * 64.99399 * 13 10 9 15 15 C 1.50699 * 109.47201 * 180.02562 * 14 13 10 16 16 H 1.08004 * 120.00035 * 0.02562 * 15 14 13 17 17 C 1.37875 * 120.00490 * 180.02562 * 15 14 13 18 18 N 1.31518 * 119.99296 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00678 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46800 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.47142 * 119.99825 * 19 17 15 22 22 H 1.48496 * 109.47300 * 240.00249 * 19 17 15 23 23 C 1.47011 * 110.75058 * 301.38443 * 9 8 6 24 24 C 1.53101 * 109.25916 * 58.61723 * 23 9 8 25 25 O 1.43013 * 109.50656 * 329.78851 * 6 5 4 26 26 C 1.38238 * 119.99784 * 0.28160 * 5 4 3 27 27 C 1.38231 * 120.00177 * 359.51049 * 26 5 4 28 28 H 1.09009 * 109.46988 * 90.00407 * 1 2 3 29 29 H 1.08994 * 109.47433 * 209.99732 * 1 2 3 30 30 H 1.08998 * 109.47475 * 330.00850 * 1 2 3 31 31 H 1.08002 * 120.00143 * 359.97111 * 3 2 1 32 32 H 1.08000 * 119.99289 * 179.97438 * 4 3 2 33 33 H 1.08998 * 109.47173 * 180.08220 * 7 6 5 34 34 H 1.08998 * 109.47030 * 300.09175 * 7 6 5 35 35 H 1.09006 * 109.46898 * 60.08991 * 7 6 5 36 36 H 1.09005 * 109.50625 * 56.84876 * 8 6 5 37 37 H 1.09004 * 109.50731 * 296.71944 * 8 6 5 38 38 H 1.09002 * 109.47153 * 59.99762 * 12 10 9 39 39 H 1.09001 * 109.46832 * 299.99953 * 12 10 9 40 40 H 1.09004 * 109.47261 * 179.97438 * 12 10 9 41 41 H 1.08998 * 109.47565 * 185.00149 * 13 10 9 42 42 H 1.09000 * 109.46738 * 304.99630 * 13 10 9 43 43 H 1.08996 * 109.47443 * 300.00108 * 14 13 10 44 44 H 1.09000 * 109.46961 * 60.00367 * 14 13 10 45 45 H 0.97006 * 119.99913 * 180.02562 * 18 17 15 46 46 H 1.09001 * 109.50483 * 178.54767 * 23 9 8 47 47 H 1.08994 * 109.50900 * 298.68441 * 23 9 8 48 48 H 1.09002 * 109.50883 * 183.21810 * 24 23 9 49 49 H 1.08998 * 109.54322 * 63.10048 * 24 23 9 50 50 H 1.08005 * 120.00006 * 179.73160 * 26 5 4 51 51 H 1.07998 * 120.00256 * 180.25830 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1971 0.0000 4 6 3.5806 1.1971 0.0005 5 6 4.2717 0.0000 0.0021 6 6 5.7787 -0.0001 0.0033 7 6 6.2884 0.0033 1.4459 8 6 6.2905 -1.2504 -0.7168 9 7 7.7586 -1.2067 -0.7803 10 6 8.2944 -2.4183 -1.4151 11 1 7.9954 -3.2933 -0.8380 12 6 7.7451 -2.5340 -2.8383 13 6 9.8215 -2.3365 -1.4623 14 6 10.3771 -2.3467 -0.0368 15 6 11.8812 -2.2656 -0.0834 16 1 12.3899 -2.2117 -1.0346 17 6 12.6080 -2.2602 1.0883 18 7 11.9885 -2.3264 2.2465 19 14 14.4724 -2.1603 1.0306 20 1 14.9211 -2.0963 -0.3836 21 1 14.9253 -0.9419 1.7487 22 1 15.0529 -3.3626 1.6807 23 6 8.2138 0.0016 -1.4832 24 6 7.6828 1.2394 -0.7553 25 8 6.2568 1.1642 -0.6757 26 6 3.5805 -1.1972 -0.0028 27 6 2.1982 -1.1972 0.0010 28 1 -0.3633 -0.0001 -1.0278 29 1 -0.3634 -0.8899 0.5137 30 1 -0.3634 0.8900 0.5137 31 1 1.6582 2.1324 -0.0005 32 1 4.1205 2.1324 0.0001 33 1 7.3784 0.0047 1.4461 34 1 5.9237 0.8937 1.9580 35 1 5.9262 -0.8863 1.9613 36 1 5.8832 -1.2808 -1.7275 37 1 5.9761 -2.1396 -0.1702 38 1 8.0440 -1.6589 -3.4154 39 1 6.6572 -2.5924 -2.8042 40 1 8.1431 -3.4328 -3.3095 41 1 10.2144 -3.1921 -2.0116 42 1 10.1206 -1.4153 -1.9622 43 1 9.9844 -1.4911 0.5125 44 1 10.0780 -3.2679 0.4632 45 1 12.4998 -2.3222 3.0709 46 1 9.3035 0.0264 -1.4959 47 1 7.8373 -0.0087 -2.5060 48 1 7.9698 2.1359 -1.3049 49 1 8.1018 1.2790 0.2501 50 1 4.1205 -2.1325 -0.0060 51 1 1.6581 -2.1325 0.0014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172499086.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:01 Heat of formation + Delta-G solvation = -26.535270 kcal Electronic energy + Delta-G solvation = -27665.271028 eV Core-core repulsion = 24143.033747 eV Total energy + Delta-G solvation = -3522.237281 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.54077 -38.98610 -36.88165 -34.06962 -33.32160 -31.71710 -31.00080 -30.89575 -29.50642 -28.03149 -26.81989 -25.73635 -24.57303 -23.58194 -22.43493 -21.69007 -20.97676 -19.53956 -18.69489 -17.10879 -16.32465 -16.08921 -15.54821 -15.37715 -14.91187 -14.87668 -14.46284 -14.38467 -14.28966 -13.88065 -13.80587 -13.51376 -13.32267 -12.81878 -12.65696 -12.42533 -12.36775 -12.25705 -12.07971 -11.81025 -11.66475 -11.47076 -11.44701 -11.26762 -11.01046 -10.96318 -10.89713 -10.84371 -10.45513 -10.20673 -10.02530 -9.64389 -9.45388 -9.23313 -8.96937 -8.90405 -8.54350 -8.27291 -7.82596 -5.92164 -3.93794 1.23574 1.36168 3.33599 3.41349 3.44925 3.61292 3.85239 4.10760 4.50865 4.66712 4.74171 4.85884 4.98074 4.99964 5.12702 5.20933 5.26469 5.32457 5.36679 5.42682 5.43456 5.45032 5.51346 5.59836 5.61231 5.65023 5.68871 5.74600 5.80044 5.92898 5.96531 6.00022 6.05615 6.09871 6.14799 6.23360 6.26879 6.34909 6.37946 6.50471 6.56174 6.58074 6.64330 6.83525 6.94077 7.21830 7.32477 7.45099 7.47906 7.81458 8.01477 8.16357 8.52671 9.15149 9.69349 11.18617 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.022774 B = 0.002879 C = 0.002815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.200107 B = 9722.157879 C = 9945.077463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.093 4.093 3 C -0.124 4.124 4 C -0.090 4.090 5 C -0.071 4.071 6 C 0.162 3.838 7 C -0.164 4.164 8 C 0.032 3.968 9 N -0.512 5.512 10 C 0.082 3.918 11 H 0.079 0.921 12 C -0.185 4.185 13 C -0.106 4.106 14 C 0.030 3.970 15 C -0.519 4.519 16 H 0.051 0.949 17 C 0.057 3.943 18 N -0.893 5.893 19 Si 0.886 3.114 20 H -0.274 1.274 21 H -0.285 1.285 22 H -0.285 1.285 23 C 0.013 3.987 24 C 0.061 3.939 25 O -0.378 6.378 26 C -0.108 4.108 27 C -0.122 4.122 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.119 0.881 32 H 0.128 0.872 33 H 0.085 0.915 34 H 0.054 0.946 35 H 0.064 0.936 36 H 0.041 0.959 37 H 0.082 0.918 38 H 0.053 0.947 39 H 0.048 0.952 40 H 0.059 0.941 41 H 0.050 0.950 42 H 0.050 0.950 43 H 0.030 0.970 44 H 0.010 0.990 45 H 0.258 0.742 46 H 0.100 0.900 47 H 0.037 0.963 48 H 0.094 0.906 49 H 0.066 0.934 50 H 0.125 0.875 51 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.906 5.449 -5.817 22.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.093 4.093 3 C -0.142 4.142 4 C -0.108 4.108 5 C -0.071 4.071 6 C 0.123 3.877 7 C -0.221 4.221 8 C -0.096 4.096 9 N -0.236 5.236 10 C -0.026 4.026 11 H 0.097 0.903 12 C -0.244 4.244 13 C -0.144 4.144 14 C -0.007 4.007 15 C -0.558 4.558 16 H 0.069 0.931 17 C -0.144 4.144 18 N -0.532 5.532 19 Si 0.714 3.286 20 H -0.199 1.199 21 H -0.211 1.211 22 H -0.212 1.212 23 C -0.115 4.115 24 C -0.015 4.015 25 O -0.297 6.297 26 C -0.126 4.126 27 C -0.140 4.140 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.137 0.863 32 H 0.146 0.854 33 H 0.103 0.897 34 H 0.073 0.927 35 H 0.083 0.917 36 H 0.060 0.940 37 H 0.100 0.900 38 H 0.072 0.928 39 H 0.067 0.933 40 H 0.078 0.922 41 H 0.068 0.932 42 H 0.068 0.932 43 H 0.048 0.952 44 H 0.028 0.972 45 H 0.067 0.933 46 H 0.118 0.882 47 H 0.055 0.945 48 H 0.112 0.888 49 H 0.085 0.915 50 H 0.143 0.857 51 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -20.804 5.600 -5.219 22.167 hybrid contribution 1.022 -0.262 -0.721 1.278 sum -19.782 5.338 -5.939 21.333 Atomic orbital electron populations 1.20775 0.91437 1.02604 1.02143 1.19916 0.95914 0.93330 1.00093 1.21019 0.94142 0.97392 1.01685 1.20987 0.93642 0.98180 0.98028 1.19560 0.93455 0.93631 1.00489 1.20136 0.89294 0.85576 0.92739 1.22264 1.03751 1.01898 0.94172 1.22771 0.89519 0.98034 0.99285 1.62373 1.06701 1.02151 1.52353 1.21883 0.97263 0.91977 0.91494 0.90286 1.22503 1.00436 1.02053 0.99433 1.21793 0.90464 1.00166 1.01933 1.18999 0.94334 0.97711 0.89645 1.21361 0.92473 1.49870 0.92087 0.93083 1.24995 0.98060 0.95628 0.95688 1.69990 1.35017 1.51086 0.97135 0.86640 0.86482 0.77529 0.77938 1.19903 1.21121 1.21150 1.22861 1.02553 0.90493 0.95582 1.22724 0.80311 0.97431 1.01067 1.87943 1.21649 1.42559 1.77555 1.21030 0.94128 0.97584 0.99904 1.20950 0.93910 0.97468 1.01647 0.91361 0.91664 0.91687 0.86256 0.85444 0.89667 0.92663 0.91720 0.94049 0.90003 0.92771 0.93300 0.92225 0.93158 0.93180 0.95152 0.97163 0.93259 0.88193 0.94510 0.88792 0.91532 0.85721 0.86126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.80 10.01 36.00 0.36 -0.44 16 2 C -0.09 -0.92 5.88 -104.62 -0.62 -1.54 16 3 C -0.12 -1.31 9.70 -39.58 -0.38 -1.69 16 4 C -0.09 -1.10 9.35 -39.58 -0.37 -1.47 16 5 C -0.07 -0.91 4.84 -104.63 -0.51 -1.42 16 6 C 0.16 2.26 0.94 -91.72 -0.09 2.18 16 7 C -0.16 -2.36 8.15 37.16 0.30 -2.06 16 8 C 0.03 0.46 3.07 -3.71 -0.01 0.45 16 9 N -0.51 -8.34 3.58 -226.33 -0.81 -9.15 16 10 C 0.08 1.37 2.43 -67.72 -0.16 1.21 16 11 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 12 C -0.19 -2.62 8.50 37.16 0.32 -2.30 16 13 C -0.11 -2.13 4.32 -26.73 -0.12 -2.24 16 14 C 0.03 0.77 4.86 -27.88 -0.14 0.63 16 15 C -0.52 -14.64 9.11 -34.44 -0.31 -14.95 16 16 H 0.05 1.41 7.74 -52.48 -0.41 1.00 16 17 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 18 N -0.89 -26.89 13.29 55.43 0.74 -26.16 16 19 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 20 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 23 C 0.01 0.20 4.88 -3.71 -0.02 0.18 16 24 C 0.06 0.87 6.61 37.21 0.25 1.12 16 25 O -0.38 -5.55 9.28 -35.23 -0.33 -5.88 16 26 C -0.11 -1.26 9.14 -39.58 -0.36 -1.62 16 27 C -0.12 -1.26 9.70 -39.58 -0.38 -1.64 16 28 H 0.07 0.44 8.14 -51.92 -0.42 0.02 16 29 H 0.06 0.41 8.08 -51.93 -0.42 -0.01 16 30 H 0.06 0.41 8.09 -51.93 -0.42 -0.01 16 31 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 32 H 0.13 1.53 7.49 -52.49 -0.39 1.14 16 33 H 0.08 1.41 6.13 -51.93 -0.32 1.09 16 34 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.04 0.60 6.44 -51.93 -0.33 0.26 16 37 H 0.08 1.12 6.72 -51.93 -0.35 0.77 16 38 H 0.05 0.76 6.54 -51.93 -0.34 0.42 16 39 H 0.05 0.64 6.46 -51.93 -0.34 0.30 16 40 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 41 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.05 0.99 6.02 -51.93 -0.31 0.67 16 43 H 0.03 0.82 7.75 -51.93 -0.40 0.42 16 44 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 45 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 46 H 0.10 1.69 6.00 -51.93 -0.31 1.38 16 47 H 0.04 0.55 6.52 -51.93 -0.34 0.21 16 48 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 49 H 0.07 1.01 6.49 -51.93 -0.34 0.67 16 50 H 0.12 1.33 6.25 -52.48 -0.33 1.01 16 51 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 LS Contribution 386.25 15.07 5.82 5.82 Total: -1.00 -30.57 386.25 -10.65 -41.21 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -8.71 Total: 1.49 kcal Atomic # 6 Polarization: -21.73 SS G_CDS: -2.34 Total: -24.07 kcal Atomic # 7 Polarization: -35.24 SS G_CDS: -0.07 Total: -35.31 kcal Atomic # 8 Polarization: -5.55 SS G_CDS: -0.33 Total: -5.88 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -30.57 -10.65 -41.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172499086.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.679 kcal (2) G-P(sol) polarization free energy of solvation -30.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds