Wall clock time and date at job start Tue Mar 31 2020 11:16:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38236 * 120.00518 * 2 1 4 4 C 1.38230 * 120.00283 * 179.97438 * 3 2 1 5 5 C 1.38236 * 119.99881 * 359.97438 * 4 3 2 6 6 C 1.50707 * 119.99745 * 180.02562 * 5 4 3 7 7 C 1.52991 * 109.54120 * 270.10876 * 6 5 4 8 8 C 1.53099 * 109.50300 * 149.99799 * 6 5 4 9 9 N 1.47010 * 109.25546 * 183.21871 * 8 6 5 10 10 C 1.46901 * 111.00014 * 182.39282 * 9 8 6 11 11 H 1.09001 * 109.47043 * 294.30113 * 10 9 8 12 12 C 1.53001 * 109.47030 * 54.29958 * 10 9 8 13 13 C 1.52999 * 109.47077 * 174.29904 * 10 9 8 14 14 C 1.53004 * 109.47200 * 176.00232 * 13 10 9 15 15 C 1.50695 * 109.47366 * 185.18612 * 14 13 10 16 16 H 1.08001 * 119.99848 * 359.97438 * 15 14 13 17 17 C 1.37878 * 119.99784 * 180.02562 * 15 14 13 18 18 N 1.31510 * 120.00379 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 119.99761 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47076 * 180.02562 * 19 17 15 21 21 H 1.48502 * 109.46796 * 299.99760 * 19 17 15 22 22 H 1.48500 * 109.47281 * 59.99625 * 19 17 15 23 23 C 1.47013 * 110.75652 * 58.61894 * 9 8 6 24 24 C 1.53106 * 109.25318 * 301.38398 * 23 9 8 25 25 O 1.43013 * 109.25780 * 56.84985 * 24 23 9 26 26 C 1.38231 * 120.00109 * 0.27111 * 5 4 3 27 27 C 1.38239 * 120.00073 * 359.52224 * 26 5 4 28 28 H 1.09001 * 109.46804 * 90.00137 * 1 2 3 29 29 H 1.08995 * 109.47237 * 210.00205 * 1 2 3 30 30 H 1.08996 * 109.47118 * 330.00908 * 1 2 3 31 31 H 1.08001 * 119.99546 * 359.97115 * 3 2 1 32 32 H 1.08004 * 119.99731 * 179.97438 * 4 3 2 33 33 H 1.09003 * 109.47415 * 299.88727 * 7 6 5 34 34 H 1.08997 * 109.47854 * 59.89455 * 7 6 5 35 35 H 1.09001 * 109.46775 * 179.89275 * 7 6 5 36 36 H 1.08996 * 109.50742 * 63.28034 * 8 6 5 37 37 H 1.08996 * 109.54277 * 303.17415 * 8 6 5 38 38 H 1.09001 * 109.47322 * 299.99846 * 12 10 9 39 39 H 1.09001 * 109.47081 * 60.00178 * 12 10 9 40 40 H 1.09000 * 109.47001 * 180.02562 * 12 10 9 41 41 H 1.08996 * 109.47384 * 56.00653 * 13 10 9 42 42 H 1.09003 * 109.47437 * 295.99767 * 13 10 9 43 43 H 1.09005 * 109.47051 * 65.18244 * 14 13 10 44 44 H 1.08999 * 109.46967 * 305.18904 * 14 13 10 45 45 H 0.97003 * 119.99844 * 0.02562 * 18 17 15 46 46 H 1.08994 * 109.50849 * 61.31532 * 23 9 8 47 47 H 1.08995 * 109.51086 * 181.44956 * 23 9 8 48 48 H 1.09001 * 109.50606 * 296.90920 * 24 23 9 49 49 H 1.09006 * 109.50239 * 176.78331 * 24 23 9 50 50 H 1.08001 * 120.00043 * 179.72491 * 26 5 4 51 51 H 1.07998 * 120.00205 * 180.27309 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1971 0.0000 4 6 3.5806 1.1970 0.0005 5 6 4.2717 -0.0002 0.0016 6 6 5.7787 -0.0002 0.0028 7 6 6.2916 0.0019 -1.4386 8 6 6.2893 -1.2496 0.7253 9 7 7.7573 -1.2058 0.7911 10 6 8.2921 -2.4166 1.4283 11 1 7.9811 -2.4452 2.4726 12 6 7.7575 -3.6532 0.7029 13 6 9.8201 -2.4009 1.3513 14 6 10.3810 -3.6108 2.1014 15 6 11.8852 -3.5279 2.1350 16 1 12.3908 -2.6957 1.6677 17 6 12.6162 -4.5149 2.7615 18 7 12.0007 -5.5285 3.3301 19 14 14.4809 -4.4118 2.8038 20 1 15.0253 -5.5867 3.5306 21 1 15.0077 -4.4017 1.4153 22 1 14.8922 -3.1653 3.4983 23 6 8.2115 0.0033 1.4932 24 6 7.6815 1.2403 0.7629 25 8 6.2557 1.1650 0.6812 26 6 3.5805 -1.1972 -0.0035 27 6 2.1981 -1.1972 0.0003 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5137 31 1 1.6583 2.1324 -0.0005 32 1 4.1206 2.1324 0.0001 33 1 5.9309 -0.8884 -1.9539 34 1 5.9278 0.8916 -1.9525 35 1 7.3816 0.0038 -1.4364 36 1 5.9758 -2.1394 0.1794 37 1 5.8804 -1.2794 1.7353 38 1 6.6690 -3.6644 0.7577 39 1 8.0685 -3.6245 -0.3414 40 1 8.1540 -4.5516 1.1759 41 1 10.1974 -1.4849 1.8057 42 1 10.1318 -2.4441 0.3077 43 1 10.0787 -4.5260 1.5923 44 1 9.9945 -3.6175 3.1206 45 1 11.0324 -5.5819 3.3084 46 1 7.8333 -0.0056 2.5154 47 1 9.3010 0.0282 1.5078 48 1 8.1023 1.2778 -0.2419 49 1 7.9678 2.1375 1.3119 50 1 4.1205 -2.1326 -0.0072 51 1 1.6581 -2.1325 0.0007 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172499089.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:06 Heat of formation + Delta-G solvation = -33.379505 kcal Electronic energy + Delta-G solvation = -27241.797422 eV Core-core repulsion = 23719.263352 eV Total energy + Delta-G solvation = -3522.534070 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.67399 -39.05509 -36.95085 -34.24070 -33.89500 -31.93597 -31.33750 -31.01752 -29.39977 -27.78475 -26.90360 -26.19746 -24.26744 -23.36709 -22.58679 -21.87548 -21.19605 -19.51312 -19.28195 -17.40979 -16.73505 -16.42230 -15.51651 -15.51469 -15.05734 -15.04688 -14.62306 -14.23750 -14.13870 -14.01574 -13.81756 -13.70608 -13.56831 -13.17748 -12.92894 -12.49524 -12.37534 -12.31179 -12.19336 -12.00387 -11.90578 -11.70562 -11.40147 -11.29464 -11.20106 -11.11376 -11.06453 -10.73248 -10.32095 -10.22516 -10.10105 -9.78805 -9.71122 -9.57104 -9.07768 -8.67455 -8.50579 -8.30765 -8.16414 -6.34554 -4.03096 1.11979 1.25364 3.44318 3.46327 3.46538 3.64986 3.67980 3.89494 4.52802 4.55949 4.63258 4.72822 4.80072 4.85467 4.93503 5.07235 5.11207 5.16908 5.25505 5.29759 5.32238 5.38622 5.43113 5.48822 5.51205 5.54447 5.55550 5.64263 5.74384 5.78451 5.81523 5.86327 5.88763 5.93079 5.97580 6.16004 6.18485 6.27150 6.29262 6.40391 6.43588 6.48545 6.56565 6.60344 6.82710 6.95906 7.11376 7.22893 7.27111 7.44050 7.57627 8.24683 8.48367 8.90642 9.68851 11.06014 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.026809 B = 0.002525 C = 0.002382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.165633 B =11088.388159 C =11752.634821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.090 4.090 3 C -0.124 4.124 4 C -0.090 4.090 5 C -0.074 4.074 6 C 0.162 3.838 7 C -0.162 4.162 8 C 0.030 3.970 9 N -0.528 5.528 10 C 0.081 3.919 11 H 0.035 0.965 12 C -0.144 4.144 13 C -0.093 4.093 14 C 0.010 3.990 15 C -0.600 4.600 16 H 0.047 0.953 17 C 0.013 3.987 18 N -0.914 5.914 19 Si 1.068 2.932 20 H -0.283 1.283 21 H -0.288 1.288 22 H -0.288 1.288 23 C 0.013 3.987 24 C 0.063 3.937 25 O -0.376 6.376 26 C -0.108 4.108 27 C -0.121 4.121 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.120 0.880 32 H 0.127 0.873 33 H 0.064 0.936 34 H 0.056 0.944 35 H 0.078 0.922 36 H 0.090 0.910 37 H 0.039 0.961 38 H 0.044 0.956 39 H 0.061 0.939 40 H 0.068 0.932 41 H 0.050 0.950 42 H 0.056 0.944 43 H 0.010 0.990 44 H 0.003 0.997 45 H 0.268 0.732 46 H 0.039 0.961 47 H 0.095 0.905 48 H 0.062 0.938 49 H 0.096 0.904 50 H 0.124 0.876 51 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.984 13.283 -8.577 26.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.090 4.090 3 C -0.142 4.142 4 C -0.108 4.108 5 C -0.075 4.075 6 C 0.122 3.878 7 C -0.219 4.219 8 C -0.098 4.098 9 N -0.253 5.253 10 C -0.027 4.027 11 H 0.053 0.947 12 C -0.201 4.201 13 C -0.131 4.131 14 C -0.027 4.027 15 C -0.638 4.638 16 H 0.066 0.934 17 C -0.190 4.190 18 N -0.550 5.550 19 Si 0.896 3.104 20 H -0.208 1.208 21 H -0.214 1.214 22 H -0.215 1.215 23 C -0.115 4.115 24 C -0.013 4.013 25 O -0.295 6.295 26 C -0.126 4.126 27 C -0.139 4.139 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.138 0.862 32 H 0.145 0.855 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.097 0.903 36 H 0.108 0.892 37 H 0.057 0.943 38 H 0.063 0.937 39 H 0.080 0.920 40 H 0.087 0.913 41 H 0.069 0.931 42 H 0.075 0.925 43 H 0.029 0.971 44 H 0.021 0.979 45 H 0.078 0.922 46 H 0.057 0.943 47 H 0.113 0.887 48 H 0.081 0.919 49 H 0.115 0.885 50 H 0.142 0.858 51 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -19.559 12.655 -8.441 24.778 hybrid contribution -1.447 0.568 0.295 1.583 sum -21.007 13.222 -8.146 26.124 Atomic orbital electron populations 1.20785 0.91330 1.02706 1.02221 1.19940 0.96006 0.93295 0.99781 1.21028 0.94117 0.97457 1.01595 1.20972 0.93689 0.98079 0.98067 1.19516 0.93239 0.93715 1.01012 1.20152 0.89601 0.85532 0.92500 1.22240 1.03054 1.02079 0.94519 1.22824 0.89167 0.98233 0.99602 1.62310 1.07367 1.02535 1.53116 1.21831 0.97313 0.88313 0.95197 0.94660 1.21919 0.99203 0.97688 1.01321 1.21578 0.90220 1.00312 1.01012 1.19246 0.96438 0.92716 0.94321 1.22052 0.91665 1.10606 1.39472 0.93422 1.25848 1.06898 0.92826 0.93470 1.70786 1.11460 1.30639 1.42161 0.83558 0.74485 0.75955 0.76360 1.20803 1.21448 1.21496 1.22838 1.02114 0.90490 0.96036 1.22708 0.80610 0.97495 1.00534 1.87975 1.21424 1.42456 1.77619 1.21019 0.94198 0.97499 0.99891 1.20971 0.93878 0.97565 1.01465 0.91253 0.91594 0.91636 0.86165 0.85462 0.91677 0.92465 0.90294 0.89219 0.94275 0.93736 0.92019 0.91279 0.93113 0.92486 0.97145 0.97907 0.92181 0.94261 0.88702 0.91938 0.88549 0.85777 0.86005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.74 10.01 36.00 0.36 -0.38 16 2 C -0.09 -0.83 5.88 -104.62 -0.62 -1.45 16 3 C -0.12 -1.20 9.70 -39.58 -0.38 -1.58 16 4 C -0.09 -1.00 9.35 -39.58 -0.37 -1.37 16 5 C -0.07 -0.87 4.84 -104.62 -0.51 -1.38 16 6 C 0.16 2.00 0.94 -91.72 -0.09 1.91 16 7 C -0.16 -1.86 8.15 37.15 0.30 -1.55 16 8 C 0.03 0.40 3.09 -3.71 -0.01 0.39 16 9 N -0.53 -7.90 3.96 -226.34 -0.90 -8.79 16 10 C 0.08 1.40 2.15 -67.71 -0.15 1.25 16 11 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 12 C -0.14 -2.30 8.51 37.16 0.32 -1.98 16 13 C -0.09 -1.93 4.57 -26.73 -0.12 -2.05 16 14 C 0.01 0.26 3.88 -27.88 -0.11 0.15 16 15 C -0.60 -17.22 9.11 -34.44 -0.31 -17.53 16 16 H 0.05 1.35 7.74 -52.49 -0.41 0.94 16 17 C 0.01 0.38 5.46 -17.82 -0.10 0.28 16 18 N -0.91 -28.25 13.65 55.43 0.76 -27.50 16 19 Si 1.07 25.54 29.90 -169.99 -5.08 20.46 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 21 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.29 -6.58 7.11 56.52 0.40 -6.17 16 23 C 0.01 0.19 5.38 -3.71 -0.02 0.17 16 24 C 0.06 0.76 6.61 37.21 0.25 1.01 16 25 O -0.38 -4.95 9.28 -35.23 -0.33 -5.28 16 26 C -0.11 -1.16 9.14 -39.58 -0.36 -1.53 16 27 C -0.12 -1.17 9.70 -39.58 -0.38 -1.55 16 28 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.38 8.08 -51.93 -0.42 -0.04 16 30 H 0.06 0.38 8.09 -51.93 -0.42 -0.04 16 31 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 32 H 0.13 1.37 7.49 -52.48 -0.39 0.98 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.08 0.97 6.12 -51.93 -0.32 0.65 16 36 H 0.09 1.13 4.65 -51.93 -0.24 0.88 16 37 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.04 0.61 6.28 -51.93 -0.33 0.28 16 39 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.07 1.21 6.65 -51.93 -0.35 0.86 16 41 H 0.05 1.05 6.20 -51.93 -0.32 0.73 16 42 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 43 H 0.01 0.27 6.67 -51.93 -0.35 -0.07 16 44 H 0.00 0.07 8.01 -51.93 -0.42 -0.34 16 45 H 0.27 8.23 7.22 -40.82 -0.29 7.94 16 46 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 47 H 0.09 1.39 6.16 -51.93 -0.32 1.07 16 48 H 0.06 0.72 6.49 -51.93 -0.34 0.39 16 49 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 50 H 0.12 1.23 6.26 -52.49 -0.33 0.90 16 51 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 LS Contribution 386.11 15.07 5.82 5.82 Total: -1.00 -31.46 386.11 -10.71 -42.17 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -8.68 Total: 0.31 kcal Atomic # 6 Polarization: -24.89 SS G_CDS: -2.30 Total: -27.19 kcal Atomic # 7 Polarization: -36.15 SS G_CDS: -0.14 Total: -36.29 kcal Atomic # 8 Polarization: -4.95 SS G_CDS: -0.33 Total: -5.28 kcal Atomic # 14 Polarization: 25.54 SS G_CDS: -5.08 Total: 20.46 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -31.46 -10.71 -42.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172499089.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.795 kcal (2) G-P(sol) polarization free energy of solvation -31.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds