Wall clock time and date at job start Tue Mar 31 2020 11:16:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38236 * 120.00518 * 2 1 4 4 C 1.38230 * 120.00283 * 179.97438 * 3 2 1 5 5 C 1.38236 * 119.99881 * 359.97438 * 4 3 2 6 6 C 1.50707 * 119.99745 * 180.02562 * 5 4 3 7 7 C 1.52991 * 109.54120 * 270.10876 * 6 5 4 8 8 C 1.53099 * 109.50300 * 149.99799 * 6 5 4 9 9 N 1.47010 * 109.25546 * 183.21871 * 8 6 5 10 10 C 1.46901 * 111.00014 * 182.39282 * 9 8 6 11 11 H 1.09001 * 109.47043 * 294.30113 * 10 9 8 12 12 C 1.53001 * 109.47030 * 54.29958 * 10 9 8 13 13 C 1.52999 * 109.47077 * 174.29904 * 10 9 8 14 14 C 1.53004 * 109.47200 * 176.00232 * 13 10 9 15 15 C 1.50695 * 109.47366 * 185.18612 * 14 13 10 16 16 H 1.08001 * 119.99848 * 359.97438 * 15 14 13 17 17 C 1.37878 * 119.99784 * 180.02562 * 15 14 13 18 18 N 1.31510 * 120.00379 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 119.99761 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47076 * 180.02562 * 19 17 15 21 21 H 1.48502 * 109.46796 * 299.99760 * 19 17 15 22 22 H 1.48500 * 109.47281 * 59.99625 * 19 17 15 23 23 C 1.47013 * 110.75652 * 58.61894 * 9 8 6 24 24 C 1.53106 * 109.25318 * 301.38398 * 23 9 8 25 25 O 1.43013 * 109.25780 * 56.84985 * 24 23 9 26 26 C 1.38231 * 120.00109 * 0.27111 * 5 4 3 27 27 C 1.38239 * 120.00073 * 359.52224 * 26 5 4 28 28 H 1.09001 * 109.46804 * 90.00137 * 1 2 3 29 29 H 1.08995 * 109.47237 * 210.00205 * 1 2 3 30 30 H 1.08996 * 109.47118 * 330.00908 * 1 2 3 31 31 H 1.08001 * 119.99546 * 359.97115 * 3 2 1 32 32 H 1.08004 * 119.99731 * 179.97438 * 4 3 2 33 33 H 1.09003 * 109.47415 * 299.88727 * 7 6 5 34 34 H 1.08997 * 109.47854 * 59.89455 * 7 6 5 35 35 H 1.09001 * 109.46775 * 179.89275 * 7 6 5 36 36 H 1.08996 * 109.50742 * 63.28034 * 8 6 5 37 37 H 1.08996 * 109.54277 * 303.17415 * 8 6 5 38 38 H 1.09001 * 109.47322 * 299.99846 * 12 10 9 39 39 H 1.09001 * 109.47081 * 60.00178 * 12 10 9 40 40 H 1.09000 * 109.47001 * 180.02562 * 12 10 9 41 41 H 1.08996 * 109.47384 * 56.00653 * 13 10 9 42 42 H 1.09003 * 109.47437 * 295.99767 * 13 10 9 43 43 H 1.09005 * 109.47051 * 65.18244 * 14 13 10 44 44 H 1.08999 * 109.46967 * 305.18904 * 14 13 10 45 45 H 0.97003 * 119.99844 * 0.02562 * 18 17 15 46 46 H 1.08994 * 109.50849 * 61.31532 * 23 9 8 47 47 H 1.08995 * 109.51086 * 181.44956 * 23 9 8 48 48 H 1.09001 * 109.50606 * 296.90920 * 24 23 9 49 49 H 1.09006 * 109.50239 * 176.78331 * 24 23 9 50 50 H 1.08001 * 120.00043 * 179.72491 * 26 5 4 51 51 H 1.07998 * 120.00205 * 180.27309 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1971 0.0000 4 6 3.5806 1.1970 0.0005 5 6 4.2717 -0.0002 0.0016 6 6 5.7787 -0.0002 0.0028 7 6 6.2916 0.0019 -1.4386 8 6 6.2893 -1.2496 0.7253 9 7 7.7573 -1.2058 0.7911 10 6 8.2921 -2.4166 1.4283 11 1 7.9811 -2.4452 2.4726 12 6 7.7575 -3.6532 0.7029 13 6 9.8201 -2.4009 1.3513 14 6 10.3810 -3.6108 2.1014 15 6 11.8852 -3.5279 2.1350 16 1 12.3908 -2.6957 1.6677 17 6 12.6162 -4.5149 2.7615 18 7 12.0007 -5.5285 3.3301 19 14 14.4809 -4.4118 2.8038 20 1 15.0253 -5.5867 3.5306 21 1 15.0077 -4.4017 1.4153 22 1 14.8922 -3.1653 3.4983 23 6 8.2115 0.0033 1.4932 24 6 7.6815 1.2403 0.7629 25 8 6.2557 1.1650 0.6812 26 6 3.5805 -1.1972 -0.0035 27 6 2.1981 -1.1972 0.0003 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5137 31 1 1.6583 2.1324 -0.0005 32 1 4.1206 2.1324 0.0001 33 1 5.9309 -0.8884 -1.9539 34 1 5.9278 0.8916 -1.9525 35 1 7.3816 0.0038 -1.4364 36 1 5.9758 -2.1394 0.1794 37 1 5.8804 -1.2794 1.7353 38 1 6.6690 -3.6644 0.7577 39 1 8.0685 -3.6245 -0.3414 40 1 8.1540 -4.5516 1.1759 41 1 10.1974 -1.4849 1.8057 42 1 10.1318 -2.4441 0.3077 43 1 10.0787 -4.5260 1.5923 44 1 9.9945 -3.6175 3.1206 45 1 11.0324 -5.5819 3.3084 46 1 7.8333 -0.0056 2.5154 47 1 9.3010 0.0282 1.5078 48 1 8.1023 1.2778 -0.2419 49 1 7.9678 2.1375 1.3119 50 1 4.1205 -2.1326 -0.0072 51 1 1.6581 -2.1325 0.0007 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172499089.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:05 Heat of formation + Delta-G solvation = -49.936320 kcal Electronic energy + Delta-G solvation = -27242.515379 eV Core-core repulsion = 23719.263352 eV Total energy + Delta-G solvation = -3523.252027 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.66383 -39.93856 -38.26102 -35.84848 -35.07609 -33.59167 -32.16529 -31.79968 -30.87196 -29.04682 -27.65939 -27.53026 -26.02297 -24.33004 -23.85844 -23.18012 -22.19567 -20.94817 -20.32055 -19.05820 -18.15808 -17.48969 -16.59612 -16.45268 -16.26489 -15.96724 -15.71572 -15.63869 -15.41433 -15.22581 -15.09271 -14.84110 -14.57148 -14.34360 -14.07672 -14.00295 -13.52714 -13.33610 -13.15277 -13.05933 -12.97313 -12.91584 -12.74618 -12.73509 -12.41775 -12.30946 -12.04361 -11.99434 -11.88849 -11.81100 -11.65150 -11.44180 -11.22351 -10.75537 -10.57318 -10.53285 -9.83902 -9.46576 -9.39534 -8.69420 -6.39479 0.35439 0.49252 1.51381 1.59999 1.79308 2.54456 2.58386 2.67291 2.87706 3.15148 3.60928 3.75938 3.85672 3.90221 3.92044 3.98051 4.07979 4.10415 4.14900 4.21354 4.32162 4.38711 4.44247 4.52096 4.56363 4.59572 4.62882 4.71866 4.74590 4.78445 4.81531 4.83722 4.84961 4.88495 4.92760 4.96407 4.98421 5.06569 5.17440 5.22048 5.25210 5.30929 5.39781 5.50003 5.53588 5.62288 5.69999 5.90486 5.94805 6.03601 6.09431 6.18439 6.20485 6.58151 7.42148 8.71319 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.026809 B = 0.002525 C = 0.002382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.165633 B =11088.388159 C =11752.634821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.093 4.093 3 C -0.129 4.129 4 C -0.102 4.102 5 C -0.092 4.092 6 C 0.165 3.835 7 C -0.156 4.156 8 C 0.034 3.966 9 N -0.525 5.525 10 C 0.090 3.910 11 H 0.020 0.980 12 C -0.139 4.139 13 C -0.079 4.079 14 C 0.014 3.986 15 C -0.618 4.618 16 H 0.049 0.951 17 C -0.041 4.041 18 N -0.938 5.938 19 Si 1.117 2.883 20 H -0.284 1.284 21 H -0.268 1.268 22 H -0.269 1.269 23 C 0.011 3.989 24 C 0.068 3.932 25 O -0.385 6.385 26 C -0.119 4.119 27 C -0.127 4.127 28 H 0.080 0.920 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.140 0.860 32 H 0.125 0.875 33 H 0.070 0.930 34 H 0.063 0.937 35 H 0.069 0.931 36 H 0.100 0.900 37 H 0.025 0.975 38 H 0.070 0.930 39 H 0.065 0.935 40 H 0.048 0.952 41 H 0.049 0.951 42 H 0.055 0.945 43 H -0.003 1.003 44 H -0.020 1.020 45 H 0.255 0.745 46 H 0.028 0.972 47 H 0.088 0.912 48 H 0.070 0.930 49 H 0.118 0.882 50 H 0.128 0.872 51 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.962 14.499 -9.693 28.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.093 4.093 3 C -0.147 4.147 4 C -0.120 4.120 5 C -0.093 4.093 6 C 0.125 3.875 7 C -0.213 4.213 8 C -0.094 4.094 9 N -0.250 5.250 10 C -0.018 4.018 11 H 0.038 0.962 12 C -0.196 4.196 13 C -0.117 4.117 14 C -0.023 4.023 15 C -0.655 4.655 16 H 0.068 0.932 17 C -0.238 4.238 18 N -0.576 5.576 19 Si 0.938 3.062 20 H -0.209 1.209 21 H -0.193 1.193 22 H -0.194 1.194 23 C -0.117 4.117 24 C -0.009 4.009 25 O -0.304 6.304 26 C -0.137 4.137 27 C -0.145 4.145 28 H 0.098 0.902 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.157 0.843 32 H 0.143 0.857 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.088 0.912 36 H 0.118 0.882 37 H 0.044 0.956 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.067 0.933 41 H 0.068 0.932 42 H 0.074 0.926 43 H 0.015 0.985 44 H -0.002 1.002 45 H 0.064 0.936 46 H 0.046 0.954 47 H 0.106 0.894 48 H 0.088 0.912 49 H 0.135 0.865 50 H 0.146 0.854 51 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -20.565 13.893 -9.572 26.600 hybrid contribution -1.237 0.209 0.653 1.414 sum -21.802 14.102 -8.919 27.454 Atomic orbital electron populations 1.20836 0.89305 1.03606 1.03160 1.20311 0.97574 0.92940 0.98511 1.21295 0.93711 0.98642 1.01014 1.21061 0.94494 0.97790 0.98696 1.19544 0.92766 0.94447 1.02525 1.20162 0.90280 0.84475 0.92576 1.22187 1.02355 1.02719 0.94076 1.22865 0.87707 0.99642 0.99209 1.62282 1.08532 1.01715 1.52435 1.21580 0.95084 0.90301 0.94878 0.96249 1.21851 1.00797 0.95953 1.00984 1.21344 0.92641 0.97860 0.99835 1.19152 0.95343 0.94319 0.93496 1.22499 0.93344 1.10572 1.39122 0.93228 1.27459 1.11581 0.92201 0.92598 1.70920 1.10763 1.31959 1.43912 0.82941 0.68998 0.76632 0.77620 1.20898 1.19298 1.19438 1.22899 1.01772 0.91228 0.95814 1.22773 0.80165 0.97030 1.00929 1.87974 1.21854 1.42769 1.77823 1.21160 0.94936 0.97370 1.00248 1.21259 0.93602 0.98708 1.00938 0.90176 0.90787 0.90716 0.84253 0.85680 0.91125 0.91775 0.91164 0.88226 0.95637 0.91124 0.91547 0.93325 0.93243 0.92645 0.98472 1.00167 0.93607 0.95417 0.89368 0.91177 0.86459 0.85383 0.84185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.17 10.01 71.24 0.71 -0.45 16 2 C -0.09 -1.53 5.88 -19.86 -0.12 -1.64 16 3 C -0.13 -2.26 9.70 22.27 0.22 -2.04 16 4 C -0.10 -2.16 9.35 22.27 0.21 -1.95 16 5 C -0.09 -2.08 4.84 -19.86 -0.10 -2.17 16 6 C 0.16 3.91 0.94 -11.51 -0.01 3.90 16 7 C -0.16 -3.38 8.15 71.98 0.59 -2.79 16 8 C 0.03 0.88 3.09 86.32 0.27 1.15 16 9 N -0.52 -15.52 3.96 -869.99 -3.45 -18.97 16 10 C 0.09 3.14 2.15 44.92 0.10 3.24 16 11 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 12 C -0.14 -4.42 8.51 71.98 0.61 -3.81 16 13 C -0.08 -3.32 4.57 30.60 0.14 -3.18 16 14 C 0.01 0.76 3.88 29.85 0.12 0.87 16 15 C -0.62 -35.93 9.11 25.60 0.23 -35.70 16 16 H 0.05 2.81 7.74 -2.91 -0.02 2.78 16 17 C -0.04 -2.44 5.46 84.66 0.46 -1.98 16 18 N -0.94 -59.17 13.65 21.45 0.29 -58.88 16 19 Si 1.12 50.92 29.90 68.60 2.05 52.97 16 20 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 21 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 22 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 23 C 0.01 0.31 5.38 86.32 0.46 0.78 16 24 C 0.07 1.55 6.61 72.02 0.48 2.02 16 25 O -0.38 -9.78 9.28 -148.98 -1.38 -11.16 16 26 C -0.12 -2.43 9.14 22.27 0.20 -2.22 16 27 C -0.13 -2.22 9.70 22.27 0.22 -2.01 16 28 H 0.08 0.68 8.14 -2.39 -0.02 0.67 16 29 H 0.07 0.66 8.08 -2.39 -0.02 0.64 16 30 H 0.07 0.65 8.09 -2.39 -0.02 0.63 16 31 H 0.14 1.81 8.06 -2.91 -0.02 1.78 16 32 H 0.13 2.60 7.49 -2.91 -0.02 2.57 16 33 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.07 1.64 6.12 -2.39 -0.01 1.62 16 36 H 0.10 2.38 4.65 -2.39 -0.01 2.37 16 37 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.07 1.86 6.28 -2.39 -0.01 1.84 16 39 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 40 H 0.05 1.74 6.65 -2.39 -0.02 1.72 16 41 H 0.05 2.07 6.20 -2.39 -0.01 2.06 16 42 H 0.05 2.34 8.14 -2.39 -0.02 2.32 16 43 H 0.00 -0.16 6.67 -2.38 -0.02 -0.18 16 44 H -0.02 -1.14 8.01 -2.39 -0.02 -1.15 16 45 H 0.25 16.25 7.22 -92.71 -0.67 15.58 16 46 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 47 H 0.09 2.58 6.16 -2.39 -0.01 2.57 16 48 H 0.07 1.52 6.49 -2.39 -0.02 1.50 16 49 H 0.12 2.18 8.14 -2.38 -0.02 2.16 16 50 H 0.13 2.38 6.26 -2.91 -0.02 2.36 16 51 H 0.14 1.84 8.06 -2.91 -0.02 1.82 16 Total: -1.00 -68.10 386.11 3.29 -64.80 By element: Atomic # 1 Polarization: 18.24 SS G_CDS: 0.99 Total: 19.23 kcal Atomic # 6 Polarization: -52.78 SS G_CDS: 4.79 Total: -47.99 kcal Atomic # 7 Polarization: -74.69 SS G_CDS: -3.15 Total: -77.85 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: -1.38 Total: -11.16 kcal Atomic # 14 Polarization: 50.92 SS G_CDS: 2.05 Total: 52.97 kcal Total: -68.10 3.29 -64.80 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172499089.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.868 kcal (2) G-P(sol) polarization free energy of solvation -68.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds