Wall clock time and date at job start Tue Mar 31 2020 11:35:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38287 * 119.97093 * 2 1 4 4 C 1.38240 * 120.11514 * 179.97438 * 3 2 1 5 5 C 1.38167 * 120.05291 * 0.27037 * 4 3 2 6 6 C 1.38715 * 119.94116 * 359.47569 * 5 4 3 7 7 O 1.35903 * 120.05529 * 180.25119 * 6 5 4 8 8 C 1.42901 * 117.00130 * 185.72001 * 7 6 5 9 9 C 1.53117 * 109.52011 * 274.91218 * 8 7 6 10 10 C 1.53051 * 109.27115 * 182.50257 * 9 8 7 11 11 N 1.46854 * 109.57396 * 59.08434 * 10 9 8 12 12 C 1.46893 * 110.99811 * 174.19270 * 11 10 9 13 13 H 1.09002 * 109.47319 * 65.39486 * 12 11 10 14 14 C 1.53001 * 109.47307 * 185.39909 * 12 11 10 15 15 C 1.53000 * 109.47394 * 305.39956 * 12 11 10 16 16 C 1.53000 * 109.47302 * 177.24307 * 15 12 11 17 17 C 1.50705 * 109.46864 * 185.27166 * 16 15 12 18 18 H 1.08001 * 120.00245 * 0.02562 * 17 16 15 19 19 C 1.37879 * 119.99865 * 179.97438 * 17 16 15 20 20 N 1.31516 * 119.99575 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00090 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47159 * 59.99933 * 21 19 17 23 23 H 1.48497 * 109.47087 * 180.02562 * 21 19 17 24 24 H 1.48509 * 109.47070 * 300.00363 * 21 19 17 25 25 C 1.46846 * 111.19683 * 298.28690 * 11 10 9 26 26 C 1.53039 * 109.52161 * 61.74374 * 25 11 10 27 27 C 1.38119 * 119.97148 * 179.97438 * 2 1 3 28 28 H 1.09004 * 109.46967 * 89.99978 * 1 2 3 29 29 H 1.09001 * 109.46762 * 210.00010 * 1 2 3 30 30 H 1.09000 * 109.47336 * 330.00339 * 1 2 3 31 31 H 1.08006 * 119.94403 * 359.97438 * 3 2 1 32 32 H 1.07994 * 119.97510 * 180.02562 * 4 3 2 33 33 H 1.07996 * 120.02730 * 179.74630 * 5 4 3 34 34 H 1.08997 * 109.51992 * 35.04069 * 8 7 6 35 35 H 1.09000 * 109.50656 * 302.37659 * 9 8 7 36 36 H 1.08998 * 109.50296 * 62.50076 * 9 8 7 37 37 H 1.08994 * 109.41137 * 299.06913 * 10 9 8 38 38 H 1.08998 * 109.46166 * 179.12744 * 10 9 8 39 39 H 1.09002 * 109.47276 * 59.99552 * 14 12 11 40 40 H 1.08994 * 109.47409 * 179.97438 * 14 12 11 41 41 H 1.08999 * 109.46727 * 300.00330 * 14 12 11 42 42 H 1.09001 * 109.46917 * 297.24144 * 15 12 11 43 43 H 1.08997 * 109.47105 * 57.24266 * 15 12 11 44 44 H 1.08994 * 109.47139 * 305.27579 * 16 15 12 45 45 H 1.08997 * 109.47303 * 65.27756 * 16 15 12 46 46 H 0.97000 * 119.99582 * 179.97438 * 20 19 17 47 47 H 1.08995 * 109.46591 * 301.72960 * 25 11 10 48 48 H 1.09001 * 109.45598 * 181.75007 * 25 11 10 49 49 H 1.09006 * 109.50599 * 180.87647 * 26 25 11 50 50 H 1.09000 * 109.50482 * 60.75922 * 26 25 11 51 51 H 1.08001 * 120.02990 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1979 1.1979 0.0000 4 6 3.5803 1.2014 0.0005 5 6 4.2752 0.0073 -0.0046 6 6 3.5846 -1.1957 0.0008 7 8 4.2659 -2.3717 0.0009 8 6 3.4944 -3.5684 -0.1204 9 6 2.9960 -3.9982 1.2622 10 6 2.2236 -5.3133 1.1344 11 7 3.1001 -6.3455 0.5661 12 6 2.4343 -7.6548 0.5570 13 1 1.5808 -7.6237 -0.1202 14 6 3.4206 -8.7253 0.0858 15 6 1.9524 -7.9918 1.9695 16 6 1.1988 -9.3232 1.9472 17 6 0.6135 -9.5918 3.3097 18 1 0.7635 -8.8837 4.1112 19 6 -0.1146 -10.7413 3.5328 20 7 -0.2977 -11.6034 2.5566 21 14 -0.8407 -11.0741 5.2213 22 1 -1.7782 -9.9802 5.5813 23 1 -1.5720 -12.3663 5.1998 24 1 0.2514 -11.1405 6.2255 25 6 3.5519 -5.9755 -0.7812 26 6 4.3653 -4.6810 -0.7104 27 6 2.1971 -1.1965 0.0005 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3634 0.8900 0.5138 31 1 1.6565 2.1325 -0.0004 32 1 4.1175 2.1383 0.0010 33 1 5.3552 0.0105 -0.0083 34 1 2.6418 -3.3874 -0.7749 35 1 3.8472 -4.1404 1.9279 36 1 2.3403 -3.2279 1.6682 37 1 1.3641 -5.1665 0.4804 38 1 1.8805 -5.6301 2.1192 39 1 4.2741 -8.7564 0.7630 40 1 2.9267 -9.6969 0.0794 41 1 3.7639 -8.4852 -0.9205 42 1 2.8105 -8.0711 2.6369 43 1 1.2878 -7.2040 2.3243 44 1 0.3971 -9.2746 1.2104 45 1 1.8871 -10.1259 1.6829 46 1 -0.8095 -12.4123 2.7136 47 1 2.6862 -5.8255 -1.4262 48 1 4.1737 -6.7732 -1.1875 49 1 4.6873 -4.3982 -1.7127 50 1 5.2387 -4.8342 -0.0766 51 1 1.6571 -2.1318 0.0014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172500656.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:35:31 Heat of formation + Delta-G solvation = -31.101296 kcal Electronic energy + Delta-G solvation = -26588.221010 eV Core-core repulsion = 23065.785731 eV Total energy + Delta-G solvation = -3522.435279 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.68758 -39.10984 -37.66941 -34.95531 -33.10280 -32.63248 -31.20748 -30.79603 -29.91321 -28.40652 -27.17529 -25.46469 -24.33731 -23.03216 -22.29351 -21.69775 -21.34353 -19.91863 -19.22270 -18.03968 -16.83498 -16.32974 -16.04446 -15.70148 -15.15464 -14.84167 -14.63360 -14.47682 -14.23912 -14.12200 -13.89223 -13.76678 -13.38187 -13.03748 -12.95879 -12.68746 -12.52099 -12.27983 -12.16287 -11.83692 -11.70696 -11.62642 -11.44073 -11.25594 -11.15822 -11.07380 -10.81914 -10.81453 -10.69997 -10.53371 -10.43324 -9.99467 -9.58094 -9.30358 -9.04269 -9.01894 -8.33909 -8.32495 -8.08283 -5.99497 -4.01376 1.09059 1.23445 2.99907 3.33405 3.37740 3.40381 3.52923 4.02839 4.45462 4.46939 4.58644 4.60266 4.65366 4.79142 4.91602 5.01838 5.09413 5.10983 5.24662 5.29104 5.32156 5.36242 5.37801 5.44220 5.50025 5.52130 5.54424 5.60286 5.64746 5.77123 5.86422 5.88140 5.93968 6.00802 6.06317 6.09573 6.20589 6.22116 6.32044 6.36295 6.39927 6.59402 6.63095 6.72628 6.76311 7.10965 7.29466 7.35999 7.42326 7.68626 7.84414 8.00808 8.44314 9.05519 9.62411 11.11781 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.017038 B = 0.002464 C = 0.002248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.971659 B =11362.100519 C =12455.031329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.047 4.047 3 C -0.165 4.165 4 C -0.078 4.078 5 C -0.163 4.163 6 C 0.140 3.860 7 O -0.309 6.309 8 C 0.086 3.914 9 C -0.139 4.139 10 C 0.053 3.947 11 N -0.534 5.534 12 C 0.082 3.918 13 H 0.035 0.965 14 C -0.142 4.142 15 C -0.105 4.105 16 C 0.023 3.977 17 C -0.519 4.519 18 H 0.053 0.947 19 C 0.056 3.944 20 N -0.896 5.896 21 Si 0.891 3.109 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.277 1.277 25 C 0.055 3.945 26 C -0.108 4.108 27 C -0.211 4.211 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.121 0.879 32 H 0.127 0.873 33 H 0.128 0.872 34 H 0.069 0.931 35 H 0.083 0.917 36 H 0.070 0.930 37 H 0.030 0.970 38 H 0.094 0.906 39 H 0.059 0.941 40 H 0.071 0.929 41 H 0.042 0.958 42 H 0.056 0.944 43 H 0.049 0.951 44 H 0.012 0.988 45 H 0.020 0.980 46 H 0.260 0.740 47 H 0.030 0.970 48 H 0.087 0.913 49 H 0.072 0.928 50 H 0.083 0.917 51 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.135 23.447 -9.046 26.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.047 4.047 3 C -0.183 4.183 4 C -0.096 4.096 5 C -0.182 4.182 6 C 0.094 3.906 7 O -0.222 6.222 8 C 0.030 3.970 9 C -0.177 4.177 10 C -0.074 4.074 11 N -0.260 5.260 12 C -0.025 4.025 13 H 0.053 0.947 14 C -0.199 4.199 15 C -0.143 4.143 16 C -0.014 4.014 17 C -0.558 4.558 18 H 0.072 0.928 19 C -0.145 4.145 20 N -0.535 5.535 21 Si 0.719 3.281 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.202 1.202 25 C -0.073 4.073 26 C -0.146 4.146 27 C -0.230 4.230 28 H 0.090 0.910 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.139 0.861 32 H 0.145 0.855 33 H 0.146 0.854 34 H 0.086 0.914 35 H 0.102 0.898 36 H 0.088 0.912 37 H 0.048 0.952 38 H 0.112 0.888 39 H 0.078 0.922 40 H 0.089 0.911 41 H 0.061 0.939 42 H 0.074 0.926 43 H 0.068 0.932 44 H 0.030 0.970 45 H 0.038 0.962 46 H 0.070 0.930 47 H 0.049 0.951 48 H 0.106 0.894 49 H 0.090 0.910 50 H 0.102 0.898 51 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 7.666 23.178 -8.777 25.943 hybrid contribution -1.401 -0.233 0.394 1.474 sum 6.265 22.945 -8.383 25.219 Atomic orbital electron populations 1.20844 0.91034 1.03072 1.02519 1.19738 0.96037 0.92527 0.96365 1.20920 0.94231 0.97426 1.05725 1.20921 0.94094 0.97184 0.97438 1.20435 1.00332 0.89845 1.07572 1.19038 0.90492 0.86208 0.94825 1.86122 1.36397 1.12332 1.87399 1.22595 0.94242 0.82645 0.97495 1.22175 1.01524 0.97193 0.96823 1.22113 0.93368 0.90458 1.01508 1.62038 1.40675 1.02617 1.20631 1.21781 0.94528 0.87024 0.99179 0.94655 1.21891 0.99525 0.98969 0.99558 1.21789 0.99526 1.00210 0.92734 1.19118 0.94734 0.90717 0.96841 1.21221 1.32638 1.05229 0.96679 0.92831 1.25017 0.96420 0.96252 0.96768 1.69953 1.40901 1.10993 1.31703 0.86676 0.79306 0.77402 0.84724 1.20305 1.21319 1.20226 1.22088 0.98345 0.96401 0.90509 1.21635 0.99273 0.92456 1.01272 1.21237 0.93174 0.99029 1.09536 0.90950 0.91293 0.91304 0.86122 0.85537 0.85389 0.91351 0.89837 0.91180 0.95176 0.88801 0.92156 0.91056 0.93868 0.92571 0.93208 0.96967 0.96154 0.92998 0.95144 0.89435 0.90974 0.89832 0.85232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.88 10.01 36.01 0.36 -0.52 16 2 C -0.05 -0.45 5.88 -104.64 -0.62 -1.06 16 3 C -0.16 -1.45 9.70 -39.56 -0.38 -1.83 16 4 C -0.08 -0.68 10.04 -39.61 -0.40 -1.08 16 5 C -0.16 -1.67 9.99 -39.43 -0.39 -2.06 16 6 C 0.14 1.62 6.60 -39.21 -0.26 1.36 16 7 O -0.31 -3.78 9.81 -19.43 -0.19 -3.97 16 8 C 0.09 0.98 2.17 -26.61 -0.06 0.92 16 9 C -0.14 -1.67 5.38 -26.64 -0.14 -1.81 16 10 C 0.05 0.73 5.11 -3.82 -0.02 0.71 16 11 N -0.53 -7.77 4.53 -226.68 -1.03 -8.80 16 12 C 0.08 1.39 2.17 -67.72 -0.15 1.25 16 13 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 14 C -0.14 -2.28 8.72 37.16 0.32 -1.95 16 15 C -0.10 -2.14 4.35 -26.73 -0.12 -2.25 16 16 C 0.02 0.59 4.54 -27.88 -0.13 0.47 16 17 C -0.52 -14.66 9.11 -34.44 -0.31 -14.97 16 18 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 19 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 20 N -0.90 -26.84 13.29 55.43 0.74 -26.11 16 21 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 25 C 0.05 0.66 5.24 -3.83 -0.02 0.64 16 26 C -0.11 -1.19 5.75 -26.65 -0.15 -1.34 16 27 C -0.21 -2.28 7.93 -39.43 -0.31 -2.59 16 28 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.51 8.08 -51.93 -0.42 0.09 16 30 H 0.07 0.43 8.09 -51.93 -0.42 0.01 16 31 H 0.12 0.81 8.06 -52.48 -0.42 0.39 16 32 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 33 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 34 H 0.07 0.75 6.32 -51.93 -0.33 0.42 16 35 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.07 0.80 6.90 -51.93 -0.36 0.44 16 37 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.09 1.40 5.82 -51.93 -0.30 1.10 16 39 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 40 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 41 H 0.04 0.58 6.30 -51.93 -0.33 0.26 16 42 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 43 H 0.05 1.00 6.04 -51.93 -0.31 0.69 16 44 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 45 H 0.02 0.54 6.77 -51.93 -0.35 0.19 16 46 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 47 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 16 48 H 0.09 1.02 6.04 -51.93 -0.31 0.71 16 49 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 50 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 51 H 0.13 1.34 5.40 -52.49 -0.28 1.06 16 LS Contribution 390.65 15.07 5.89 5.89 Total: -1.00 -30.30 390.65 -11.29 -41.58 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -8.80 Total: -0.66 kcal Atomic # 6 Polarization: -21.74 SS G_CDS: -2.87 Total: -24.61 kcal Atomic # 7 Polarization: -34.61 SS G_CDS: -0.29 Total: -34.90 kcal Atomic # 8 Polarization: -3.78 SS G_CDS: -0.19 Total: -3.97 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -30.30 -11.29 -41.58 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172500656.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.480 kcal (2) G-P(sol) polarization free energy of solvation -30.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds