Wall clock time and date at job start Tue Mar 31 2020 11:35:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38287 * 119.97093 * 2 1 4 4 C 1.38240 * 120.11514 * 179.97438 * 3 2 1 5 5 C 1.38167 * 120.05291 * 0.27037 * 4 3 2 6 6 C 1.38715 * 119.94116 * 359.47569 * 5 4 3 7 7 O 1.35903 * 120.05529 * 180.25119 * 6 5 4 8 8 C 1.42901 * 117.00130 * 185.72001 * 7 6 5 9 9 C 1.53117 * 109.52011 * 274.91218 * 8 7 6 10 10 C 1.53051 * 109.27115 * 182.50257 * 9 8 7 11 11 N 1.46854 * 109.57396 * 59.08434 * 10 9 8 12 12 C 1.46893 * 110.99811 * 174.19270 * 11 10 9 13 13 H 1.09002 * 109.47319 * 65.39486 * 12 11 10 14 14 C 1.53001 * 109.47307 * 185.39909 * 12 11 10 15 15 C 1.53000 * 109.47394 * 305.39956 * 12 11 10 16 16 C 1.53000 * 109.47302 * 177.24307 * 15 12 11 17 17 C 1.50705 * 109.46864 * 185.27166 * 16 15 12 18 18 H 1.08001 * 120.00245 * 0.02562 * 17 16 15 19 19 C 1.37879 * 119.99865 * 179.97438 * 17 16 15 20 20 N 1.31516 * 119.99575 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00090 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47159 * 59.99933 * 21 19 17 23 23 H 1.48497 * 109.47087 * 180.02562 * 21 19 17 24 24 H 1.48509 * 109.47070 * 300.00363 * 21 19 17 25 25 C 1.46846 * 111.19683 * 298.28690 * 11 10 9 26 26 C 1.53039 * 109.52161 * 61.74374 * 25 11 10 27 27 C 1.38119 * 119.97148 * 179.97438 * 2 1 3 28 28 H 1.09004 * 109.46967 * 89.99978 * 1 2 3 29 29 H 1.09001 * 109.46762 * 210.00010 * 1 2 3 30 30 H 1.09000 * 109.47336 * 330.00339 * 1 2 3 31 31 H 1.08006 * 119.94403 * 359.97438 * 3 2 1 32 32 H 1.07994 * 119.97510 * 180.02562 * 4 3 2 33 33 H 1.07996 * 120.02730 * 179.74630 * 5 4 3 34 34 H 1.08997 * 109.51992 * 35.04069 * 8 7 6 35 35 H 1.09000 * 109.50656 * 302.37659 * 9 8 7 36 36 H 1.08998 * 109.50296 * 62.50076 * 9 8 7 37 37 H 1.08994 * 109.41137 * 299.06913 * 10 9 8 38 38 H 1.08998 * 109.46166 * 179.12744 * 10 9 8 39 39 H 1.09002 * 109.47276 * 59.99552 * 14 12 11 40 40 H 1.08994 * 109.47409 * 179.97438 * 14 12 11 41 41 H 1.08999 * 109.46727 * 300.00330 * 14 12 11 42 42 H 1.09001 * 109.46917 * 297.24144 * 15 12 11 43 43 H 1.08997 * 109.47105 * 57.24266 * 15 12 11 44 44 H 1.08994 * 109.47139 * 305.27579 * 16 15 12 45 45 H 1.08997 * 109.47303 * 65.27756 * 16 15 12 46 46 H 0.97000 * 119.99582 * 179.97438 * 20 19 17 47 47 H 1.08995 * 109.46591 * 301.72960 * 25 11 10 48 48 H 1.09001 * 109.45598 * 181.75007 * 25 11 10 49 49 H 1.09006 * 109.50599 * 180.87647 * 26 25 11 50 50 H 1.09000 * 109.50482 * 60.75922 * 26 25 11 51 51 H 1.08001 * 120.02990 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1979 1.1979 0.0000 4 6 3.5803 1.2014 0.0005 5 6 4.2752 0.0073 -0.0046 6 6 3.5846 -1.1957 0.0008 7 8 4.2659 -2.3717 0.0009 8 6 3.4944 -3.5684 -0.1204 9 6 2.9960 -3.9982 1.2622 10 6 2.2236 -5.3133 1.1344 11 7 3.1001 -6.3455 0.5661 12 6 2.4343 -7.6548 0.5570 13 1 1.5808 -7.6237 -0.1202 14 6 3.4206 -8.7253 0.0858 15 6 1.9524 -7.9918 1.9695 16 6 1.1988 -9.3232 1.9472 17 6 0.6135 -9.5918 3.3097 18 1 0.7635 -8.8837 4.1112 19 6 -0.1146 -10.7413 3.5328 20 7 -0.2977 -11.6034 2.5566 21 14 -0.8407 -11.0741 5.2213 22 1 -1.7782 -9.9802 5.5813 23 1 -1.5720 -12.3663 5.1998 24 1 0.2514 -11.1405 6.2255 25 6 3.5519 -5.9755 -0.7812 26 6 4.3653 -4.6810 -0.7104 27 6 2.1971 -1.1965 0.0005 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3634 0.8900 0.5138 31 1 1.6565 2.1325 -0.0004 32 1 4.1175 2.1383 0.0010 33 1 5.3552 0.0105 -0.0083 34 1 2.6418 -3.3874 -0.7749 35 1 3.8472 -4.1404 1.9279 36 1 2.3403 -3.2279 1.6682 37 1 1.3641 -5.1665 0.4804 38 1 1.8805 -5.6301 2.1192 39 1 4.2741 -8.7564 0.7630 40 1 2.9267 -9.6969 0.0794 41 1 3.7639 -8.4852 -0.9205 42 1 2.8105 -8.0711 2.6369 43 1 1.2878 -7.2040 2.3243 44 1 0.3971 -9.2746 1.2104 45 1 1.8871 -10.1259 1.6829 46 1 -0.8095 -12.4123 2.7136 47 1 2.6862 -5.8255 -1.4262 48 1 4.1737 -6.7732 -1.1875 49 1 4.6873 -4.3982 -1.7127 50 1 5.2387 -4.8342 -0.0766 51 1 1.6571 -2.1318 0.0014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172500656.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:35:31 Heat of formation + Delta-G solvation = -46.326375 kcal Electronic energy + Delta-G solvation = -26588.881219 eV Core-core repulsion = 23065.785731 eV Total energy + Delta-G solvation = -3523.095488 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.54101 -40.13437 -38.58629 -36.40561 -34.78401 -33.55670 -32.34887 -32.09971 -30.77274 -29.87497 -27.84822 -27.20624 -25.47815 -24.25256 -23.36170 -22.82252 -22.34316 -20.95448 -20.68938 -18.86619 -18.57751 -17.58325 -16.85029 -16.72370 -16.49173 -16.11312 -15.91644 -15.81540 -15.32644 -15.11550 -14.79672 -14.61088 -14.39462 -14.14606 -14.03312 -13.86873 -13.84096 -13.68252 -13.22779 -13.08558 -12.86181 -12.75482 -12.57530 -12.50781 -12.41660 -12.28747 -12.26245 -12.21711 -11.99636 -11.63650 -11.58322 -11.44373 -11.30606 -11.18076 -10.86880 -10.52074 -9.75768 -9.27662 -9.10113 -8.19569 -6.29921 0.37513 0.49503 1.39129 1.41854 1.49764 2.16106 2.40512 2.80647 2.86112 3.13406 3.61391 3.66559 3.83400 3.90187 3.98529 4.00636 4.07198 4.15500 4.22757 4.31100 4.34583 4.41332 4.44974 4.47560 4.52391 4.62143 4.71934 4.76063 4.78329 4.79091 4.85558 4.88804 4.90481 4.93421 4.97969 5.02491 5.09696 5.14446 5.21687 5.25095 5.26025 5.39802 5.41999 5.51426 5.52407 5.66506 5.78562 5.86866 5.90475 6.11151 6.19168 6.29828 6.47737 6.86824 7.38736 8.91818 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.017038 B = 0.002464 C = 0.002248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.971659 B =11362.100519 C =12455.031329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.057 4.057 3 C -0.167 4.167 4 C -0.077 4.077 5 C -0.176 4.176 6 C 0.116 3.884 7 O -0.320 6.320 8 C 0.090 3.910 9 C -0.129 4.129 10 C 0.054 3.946 11 N -0.538 5.538 12 C 0.091 3.909 13 H 0.027 0.973 14 C -0.136 4.136 15 C -0.091 4.091 16 C 0.030 3.970 17 C -0.543 4.543 18 H 0.056 0.944 19 C 0.001 3.999 20 N -0.931 5.931 21 Si 0.961 3.039 22 H -0.268 1.268 23 H -0.282 1.282 24 H -0.268 1.268 25 C 0.055 3.945 26 C -0.102 4.102 27 C -0.224 4.224 28 H 0.080 0.920 29 H 0.064 0.936 30 H 0.082 0.918 31 H 0.144 0.856 32 H 0.154 0.846 33 H 0.135 0.865 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.033 0.967 38 H 0.077 0.923 39 H 0.059 0.941 40 H 0.047 0.953 41 H 0.072 0.928 42 H 0.050 0.950 43 H 0.050 0.950 44 H -0.013 1.013 45 H 0.000 1.000 46 H 0.263 0.737 47 H 0.036 0.964 48 H 0.097 0.903 49 H 0.090 0.910 50 H 0.077 0.923 51 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.302 25.545 -9.023 28.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.058 4.058 3 C -0.185 4.185 4 C -0.095 4.095 5 C -0.195 4.195 6 C 0.071 3.929 7 O -0.234 6.234 8 C 0.034 3.966 9 C -0.167 4.167 10 C -0.074 4.074 11 N -0.263 5.263 12 C -0.017 4.017 13 H 0.045 0.955 14 C -0.194 4.194 15 C -0.129 4.129 16 C -0.007 4.007 17 C -0.581 4.581 18 H 0.074 0.926 19 C -0.197 4.197 20 N -0.572 5.572 21 Si 0.786 3.214 22 H -0.193 1.193 23 H -0.208 1.208 24 H -0.193 1.193 25 C -0.073 4.073 26 C -0.140 4.140 27 C -0.243 4.243 28 H 0.099 0.901 29 H 0.083 0.917 30 H 0.101 0.899 31 H 0.162 0.838 32 H 0.172 0.828 33 H 0.153 0.847 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.051 0.949 38 H 0.096 0.904 39 H 0.078 0.922 40 H 0.066 0.934 41 H 0.091 0.909 42 H 0.069 0.931 43 H 0.069 0.931 44 H 0.005 0.995 45 H 0.019 0.981 46 H 0.072 0.928 47 H 0.054 0.946 48 H 0.115 0.885 49 H 0.109 0.891 50 H 0.096 0.904 51 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 7.843 25.299 -8.757 27.897 hybrid contribution -1.456 -0.807 0.357 1.703 sum 6.386 24.492 -8.399 26.668 Atomic orbital electron populations 1.20881 0.89697 1.03606 1.03192 1.20062 0.97210 0.92498 0.95982 1.21276 0.94541 0.98084 1.04635 1.21281 0.94340 0.97740 0.96142 1.20695 1.00949 0.90029 1.07807 1.19304 0.91017 0.86317 0.96237 1.86093 1.36782 1.12693 1.87829 1.22530 0.94474 0.82766 0.96848 1.22050 1.00926 0.96278 0.97402 1.22083 0.93708 0.90969 1.00601 1.61996 1.40215 1.01628 1.22482 1.21525 0.94749 0.88910 0.96494 0.95508 1.21814 0.98886 0.97378 1.01302 1.21550 0.98672 0.97462 0.95180 1.18980 0.93863 0.92803 0.95068 1.21672 1.33012 1.05588 0.97846 0.92568 1.25943 0.96793 0.95994 1.00998 1.70083 1.41621 1.11492 1.33975 0.85557 0.78701 0.77515 0.79626 1.19267 1.20760 1.19278 1.22171 0.98763 0.97345 0.89004 1.21579 0.98611 0.91580 1.02183 1.21322 0.93077 0.99576 1.10307 0.90139 0.91667 0.89891 0.83805 0.82810 0.84708 0.90902 0.90869 0.90705 0.94881 0.90435 0.92188 0.93414 0.90940 0.93074 0.93135 0.99492 0.98128 0.92804 0.94606 0.88532 0.89149 0.90414 0.85488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.55 10.01 71.24 0.71 -0.84 16 2 C -0.06 -1.02 5.88 -19.88 -0.12 -1.14 16 3 C -0.17 -2.56 9.70 22.28 0.22 -2.35 16 4 C -0.08 -1.17 10.04 22.25 0.22 -0.95 16 5 C -0.18 -3.39 9.99 22.37 0.22 -3.16 16 6 C 0.12 2.61 6.60 22.51 0.15 2.76 16 7 O -0.32 -7.62 9.81 -92.46 -0.91 -8.53 16 8 C 0.09 1.96 2.17 30.67 0.07 2.02 16 9 C -0.13 -3.05 5.38 30.65 0.17 -2.88 16 10 C 0.05 1.48 5.11 86.33 0.44 1.92 16 11 N -0.54 -15.33 4.53 -871.10 -3.94 -19.28 16 12 C 0.09 3.11 2.17 44.92 0.10 3.21 16 13 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 14 C -0.14 -4.36 8.72 71.98 0.63 -3.73 16 15 C -0.09 -3.80 4.35 30.59 0.13 -3.66 16 16 C 0.03 1.60 4.54 29.85 0.14 1.74 16 17 C -0.54 -31.26 9.11 25.60 0.23 -31.03 16 18 H 0.06 3.12 7.74 -2.91 -0.02 3.10 16 19 C 0.00 0.03 5.46 84.66 0.46 0.49 16 20 N -0.93 -56.89 13.29 21.45 0.28 -56.60 16 21 Si 0.96 44.65 29.54 68.60 2.03 46.67 16 22 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 23 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 24 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 25 C 0.05 1.24 5.24 86.33 0.45 1.70 16 26 C -0.10 -2.07 5.75 30.65 0.18 -1.90 16 27 C -0.22 -4.68 7.93 22.36 0.18 -4.50 16 28 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 29 H 0.06 0.90 8.08 -2.39 -0.02 0.88 16 30 H 0.08 0.85 8.09 -2.39 -0.02 0.83 16 31 H 0.14 1.47 8.06 -2.91 -0.02 1.45 16 32 H 0.15 1.41 8.06 -2.91 -0.02 1.38 16 33 H 0.14 2.28 8.06 -2.91 -0.02 2.26 16 34 H 0.07 1.53 6.32 -2.39 -0.02 1.51 16 35 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.07 1.69 6.90 -2.39 -0.02 1.67 16 37 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.08 2.35 5.82 -2.39 -0.01 2.34 16 39 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 40 H 0.05 1.74 6.62 -2.39 -0.02 1.72 16 41 H 0.07 1.86 6.30 -2.39 -0.02 1.85 16 42 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 43 H 0.05 2.08 6.04 -2.39 -0.01 2.07 16 44 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 45 H 0.00 0.02 6.77 -2.39 -0.02 0.01 16 46 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 47 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 48 H 0.10 2.03 6.04 -2.39 -0.01 2.02 16 49 H 0.09 1.54 8.14 -2.38 -0.02 1.52 16 50 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 51 H 0.13 2.59 5.40 -2.91 -0.02 2.58 16 Total: -1.00 -65.71 390.65 2.92 -62.79 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: 0.89 Total: 17.25 kcal Atomic # 6 Polarization: -46.87 SS G_CDS: 4.58 Total: -42.30 kcal Atomic # 7 Polarization: -72.22 SS G_CDS: -3.66 Total: -75.88 kcal Atomic # 8 Polarization: -7.62 SS G_CDS: -0.91 Total: -8.53 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.67 kcal Total: -65.71 2.92 -62.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172500656.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.460 kcal (2) G-P(sol) polarization free energy of solvation -65.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds