Wall clock time and date at job start Tue Mar 31 2020 11:43:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38269 * 119.94712 * 2 1 4 4 C 1.38137 * 120.05603 * 179.97438 * 3 2 1 5 5 C 1.38726 * 119.94996 * 0.02562 * 4 3 2 6 6 O 1.35895 * 120.06021 * 179.72248 * 5 4 3 7 7 C 1.42904 * 117.00154 * 177.90062 * 6 5 4 8 8 H 1.08995 * 109.50302 * 35.39026 * 7 6 5 9 9 C 1.53121 * 109.50078 * 275.31033 * 7 6 5 10 10 C 1.53121 * 109.15694 * 182.44099 * 9 7 6 11 11 C 1.53038 * 109.30816 * 57.59751 * 10 9 7 12 12 N 1.46845 * 109.52773 * 300.83894 * 11 10 9 13 13 C 1.46894 * 111.00648 * 185.83881 * 12 11 10 14 14 H 1.09005 * 109.47291 * 300.55751 * 13 12 11 15 15 C 1.52994 * 109.47403 * 180.55665 * 13 12 11 16 16 C 1.52997 * 109.46916 * 60.55325 * 13 12 11 17 17 C 1.53002 * 109.47036 * 185.32279 * 16 13 12 18 18 C 1.50700 * 109.47189 * 183.45253 * 17 16 13 19 19 H 1.08004 * 120.00054 * 0.02562 * 18 17 16 20 20 C 1.37874 * 120.00203 * 179.97438 * 18 17 16 21 21 N 1.31511 * 119.99932 * 0.02562 * 20 18 17 22 22 Si 1.86807 * 120.00195 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.47019 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.46790 * 119.99933 * 22 20 18 25 25 H 1.48493 * 109.47190 * 240.00042 * 22 20 18 26 26 C 1.46856 * 111.19534 * 61.73817 * 12 11 10 27 27 C 1.38732 * 119.88448 * 359.97438 * 5 4 3 28 28 C 1.38142 * 119.94607 * 0.02562 * 27 5 4 29 29 H 1.09001 * 109.46854 * 90.00157 * 1 2 3 30 30 H 1.09000 * 109.47476 * 210.00433 * 1 2 3 31 31 H 1.08996 * 109.47437 * 330.00747 * 1 2 3 32 32 H 1.08001 * 119.96649 * 359.97438 * 3 2 1 33 33 H 1.08006 * 120.02406 * 179.97438 * 4 3 2 34 34 H 1.08993 * 109.52408 * 302.31023 * 9 7 6 35 35 H 1.09004 * 109.52045 * 62.50235 * 9 7 6 36 36 H 1.09001 * 109.47232 * 297.65875 * 10 9 7 37 37 H 1.09000 * 109.53986 * 177.57743 * 10 9 7 38 38 H 1.09004 * 109.46592 * 180.82311 * 11 10 9 39 39 H 1.08996 * 109.45590 * 60.85336 * 11 10 9 40 40 H 1.08999 * 109.47332 * 60.00015 * 15 13 12 41 41 H 1.09001 * 109.47295 * 180.02562 * 15 13 12 42 42 H 1.08999 * 109.46873 * 299.99591 * 15 13 12 43 43 H 1.09002 * 109.47545 * 305.32129 * 16 13 12 44 44 H 1.08996 * 109.47210 * 65.32839 * 16 13 12 45 45 H 1.08999 * 109.47448 * 303.45508 * 17 16 13 46 46 H 1.08999 * 109.47085 * 63.45457 * 17 16 13 47 47 H 0.97000 * 120.00185 * 180.02562 * 21 20 18 48 48 H 1.08993 * 109.45978 * 178.24119 * 26 12 11 49 49 H 1.09006 * 109.45486 * 58.27926 * 26 12 11 50 50 H 1.08003 * 120.02799 * 179.97438 * 27 5 4 51 51 H 1.08006 * 119.97572 * 180.02562 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1981 0.0000 4 6 3.5786 1.2007 0.0005 5 6 4.2734 0.0000 0.0005 6 8 5.6324 0.0000 -0.0046 7 6 6.2813 -1.2723 0.0423 8 1 5.6981 -1.9994 -0.5227 9 6 6.3999 -1.7322 1.4980 10 6 7.1500 -3.0663 1.5440 11 6 8.5238 -2.8971 0.8912 12 7 8.3555 -2.4575 -0.4997 13 6 9.6466 -2.4178 -1.1993 14 1 10.3173 -1.7292 -0.6854 15 6 9.4328 -1.9431 -2.6379 16 6 10.2638 -3.8177 -1.2106 17 6 11.6654 -3.7522 -1.8204 18 6 12.2400 -5.1426 -1.9095 19 1 11.6629 -5.9884 -1.5659 20 6 13.5019 -5.3350 -2.4305 21 7 14.2044 -4.3051 -2.8494 22 14 14.2144 -7.0583 -2.5403 23 1 13.2315 -8.0352 -2.0064 24 1 14.5121 -7.3814 -3.9588 25 1 15.4655 -7.1284 -1.7435 26 6 7.6803 -1.1551 -0.5669 27 6 3.5786 -1.2007 0.0005 28 6 2.1972 -1.1981 0.0000 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8899 0.5139 31 1 -0.3634 0.8900 0.5137 32 1 1.6558 2.1326 -0.0004 33 1 4.1172 2.1369 0.0001 34 1 6.9492 -0.9861 2.0722 35 1 5.4038 -1.8590 1.9223 36 1 6.5807 -3.8221 1.0030 37 1 7.2758 -3.3783 2.5808 38 1 9.0544 -3.8492 0.9095 39 1 9.0976 -2.1511 1.4410 40 1 8.9931 -0.9457 -2.6299 41 1 10.3907 -1.9141 -3.1572 42 1 8.7621 -2.6317 -3.1519 43 1 10.3289 -4.1943 -0.1898 44 1 9.6398 -4.4851 -1.8050 45 1 11.6075 -3.3184 -2.8187 46 1 12.3065 -3.1338 -1.1922 47 1 15.0921 -4.4405 -3.2163 48 1 7.5981 -0.8420 -1.6077 49 1 8.2582 -0.4173 -0.0103 50 1 4.1172 -2.1369 0.0001 51 1 1.6557 -2.1326 0.0004 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172504739.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:21 Heat of formation + Delta-G solvation = -29.438659 kcal Electronic energy + Delta-G solvation = -26452.624819 eV Core-core repulsion = 22930.261637 eV Total energy + Delta-G solvation = -3522.363182 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.67153 -39.13147 -37.64824 -35.08289 -33.02189 -32.29645 -31.31468 -31.07636 -30.12969 -28.44811 -26.56126 -25.49407 -24.15400 -23.64774 -22.39671 -21.52648 -21.22497 -19.88205 -19.32207 -18.29325 -16.80420 -16.14449 -15.75692 -15.45784 -15.30350 -14.88305 -14.82438 -14.49933 -14.21344 -13.97983 -13.76165 -13.72570 -13.59873 -13.30335 -13.12520 -12.83613 -12.47438 -12.36169 -12.09901 -11.82216 -11.72294 -11.55878 -11.52235 -11.20728 -11.13994 -10.98842 -10.87449 -10.69292 -10.57949 -10.55263 -10.32870 -10.04522 -9.55421 -9.30749 -9.23113 -9.01292 -8.32922 -8.21995 -8.10515 -5.99142 -4.00820 1.11212 1.20276 2.91056 3.31324 3.38911 3.43111 3.52008 4.16258 4.47184 4.52383 4.58580 4.61471 4.63997 4.74037 4.87060 4.99170 5.06832 5.12034 5.14953 5.30737 5.33818 5.36777 5.41321 5.48586 5.52116 5.54027 5.57351 5.64814 5.71332 5.76715 5.80288 5.82461 5.93240 5.95836 6.06972 6.08898 6.16964 6.22403 6.31109 6.37210 6.40449 6.57753 6.64194 6.70849 6.75725 7.12227 7.25849 7.36517 7.40756 7.70484 7.85050 8.01586 8.44897 9.06561 9.63055 11.12218 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.029991 B = 0.002119 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.402919 B =13212.277550 C =13367.596135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.132 4.132 3 C -0.082 4.082 4 C -0.153 4.153 5 C 0.134 3.866 6 O -0.311 6.311 7 C 0.089 3.911 8 H 0.083 0.917 9 C -0.143 4.143 10 C -0.112 4.112 11 C 0.046 3.954 12 N -0.530 5.530 13 C 0.085 3.915 14 H 0.037 0.963 15 C -0.146 4.146 16 C -0.102 4.102 17 C 0.021 3.979 18 C -0.517 4.517 19 H 0.055 0.945 20 C 0.055 3.945 21 N -0.896 5.896 22 Si 0.890 3.110 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.285 1.285 26 C 0.058 3.942 27 C -0.206 4.206 28 C -0.079 4.079 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.126 0.874 33 H 0.129 0.871 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.090 0.910 39 H 0.033 0.967 40 H 0.044 0.956 41 H 0.072 0.928 42 H 0.060 0.940 43 H 0.049 0.951 44 H 0.056 0.944 45 H 0.021 0.979 46 H 0.012 0.988 47 H 0.259 0.741 48 H 0.088 0.912 49 H 0.040 0.960 50 H 0.132 0.868 51 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.093 9.926 7.902 28.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.132 4.132 3 C -0.100 4.100 4 C -0.172 4.172 5 C 0.088 3.912 6 O -0.224 6.224 7 C 0.033 3.967 8 H 0.101 0.899 9 C -0.181 4.181 10 C -0.150 4.150 11 C -0.082 4.082 12 N -0.256 5.256 13 C -0.022 4.022 14 H 0.055 0.945 15 C -0.204 4.204 16 C -0.140 4.140 17 C -0.016 4.016 18 C -0.556 4.556 19 H 0.073 0.927 20 C -0.145 4.145 21 N -0.535 5.535 22 Si 0.718 3.282 23 H -0.197 1.197 24 H -0.210 1.210 25 H -0.211 1.211 26 C -0.071 4.071 27 C -0.224 4.224 28 C -0.097 4.097 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.144 0.856 33 H 0.147 0.853 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.109 0.891 39 H 0.051 0.949 40 H 0.063 0.937 41 H 0.091 0.909 42 H 0.079 0.921 43 H 0.067 0.933 44 H 0.075 0.925 45 H 0.039 0.961 46 H 0.031 0.969 47 H 0.069 0.931 48 H 0.107 0.893 49 H 0.058 0.942 50 H 0.150 0.850 51 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -25.079 9.796 7.583 27.972 hybrid contribution 1.037 -0.507 0.353 1.207 sum -24.042 9.289 7.936 26.968 Atomic orbital electron populations 1.20703 0.91213 1.02495 1.02077 1.19816 0.96139 0.93103 1.04187 1.20818 0.92973 0.97695 0.98518 1.20431 0.93760 0.96362 1.06598 1.19020 0.82615 0.94042 0.95518 1.86064 1.16031 1.32455 1.87867 1.22458 0.94092 0.83422 0.96776 0.89880 1.22134 1.01309 0.98434 0.96185 1.21541 0.96224 0.96501 1.00748 1.22229 0.96390 1.01550 0.88017 1.61910 1.23434 1.25935 1.14369 1.21775 0.87043 0.99349 0.94059 0.94469 1.21959 1.02774 0.99676 0.95950 1.21753 0.98878 0.92739 1.00597 1.19153 0.89429 0.97010 0.96052 1.21288 1.00424 0.93274 1.40565 0.92682 1.25023 0.97184 0.96737 0.95585 1.69971 1.11577 1.29611 1.42380 0.86561 0.79024 0.84906 0.77664 1.19747 1.21045 1.21087 1.21994 0.91960 0.91475 1.01625 1.21350 0.95284 0.97597 1.08212 1.20835 0.93305 0.97649 0.97955 0.91509 0.91799 0.91799 0.85599 0.85308 0.91198 0.91492 0.90926 0.91004 0.89132 0.94923 0.93698 0.90867 0.92130 0.93263 0.92478 0.96058 0.96949 0.93116 0.89347 0.94181 0.85012 0.85934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.65 10.01 36.00 0.36 -0.29 16 2 C -0.13 -1.14 5.88 -104.60 -0.62 -1.75 16 3 C -0.08 -0.72 9.69 -39.61 -0.38 -1.10 16 4 C -0.15 -1.56 9.99 -39.44 -0.39 -1.96 16 5 C 0.13 1.54 6.59 -39.22 -0.26 1.28 16 6 O -0.31 -3.91 9.80 -19.41 -0.19 -4.10 16 7 C 0.09 1.05 2.29 -26.65 -0.06 0.99 16 8 H 0.08 0.98 5.95 -51.93 -0.31 0.67 16 9 C -0.14 -1.54 5.38 -26.61 -0.14 -1.68 16 10 C -0.11 -1.22 6.09 -26.65 -0.16 -1.38 16 11 C 0.05 0.62 5.24 -3.83 -0.02 0.60 16 12 N -0.53 -7.81 4.52 -226.70 -1.03 -8.84 16 13 C 0.08 1.46 2.14 -67.72 -0.15 1.31 16 14 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 15 C -0.15 -2.39 8.58 37.15 0.32 -2.08 16 16 C -0.10 -2.08 4.56 -26.73 -0.12 -2.20 16 17 C 0.02 0.53 4.81 -27.88 -0.13 0.40 16 18 C -0.52 -14.59 9.11 -34.44 -0.31 -14.91 16 19 H 0.05 1.52 7.74 -52.48 -0.41 1.11 16 20 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 21 N -0.90 -26.89 13.29 55.43 0.74 -26.15 16 22 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 23 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 24 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 25 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 26 C 0.06 0.77 4.77 -3.83 -0.02 0.75 16 27 C -0.21 -2.14 8.42 -39.43 -0.33 -2.48 16 28 C -0.08 -0.73 9.69 -39.61 -0.38 -1.11 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.34 8.08 -51.93 -0.42 -0.08 16 31 H 0.06 0.32 8.08 -51.93 -0.42 -0.10 16 32 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 33 H 0.13 1.17 8.06 -52.48 -0.42 0.75 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.07 0.67 7.44 -51.93 -0.39 0.28 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.09 1.31 5.92 -51.93 -0.31 1.00 16 39 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.04 0.64 6.21 -51.93 -0.32 0.32 16 41 H 0.07 1.32 6.50 -51.93 -0.34 0.98 16 42 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.05 0.98 6.03 -51.93 -0.31 0.67 16 44 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 45 H 0.02 0.57 6.42 -51.93 -0.33 0.23 16 46 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 47 H 0.26 7.33 8.31 -40.82 -0.34 7.00 16 48 H 0.09 1.19 5.89 -51.93 -0.31 0.88 16 49 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 50 H 0.13 1.29 5.68 -52.48 -0.30 0.99 16 51 H 0.12 0.89 8.06 -52.48 -0.42 0.46 16 LS Contribution 391.04 15.07 5.89 5.89 Total: -1.00 -30.23 391.04 -11.30 -41.53 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -8.79 Total: -0.91 kcal Atomic # 6 Polarization: -21.20 SS G_CDS: -2.91 Total: -24.10 kcal Atomic # 7 Polarization: -34.70 SS G_CDS: -0.29 Total: -34.99 kcal Atomic # 8 Polarization: -3.91 SS G_CDS: -0.19 Total: -4.10 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -30.23 -11.30 -41.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172504739.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.096 kcal (2) G-P(sol) polarization free energy of solvation -30.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds