Wall clock time and date at job start Tue Mar 31 2020 11:43:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38269 * 119.94712 * 2 1 4 4 C 1.38137 * 120.05603 * 179.97438 * 3 2 1 5 5 C 1.38726 * 119.94996 * 0.02562 * 4 3 2 6 6 O 1.35895 * 120.06021 * 179.72248 * 5 4 3 7 7 C 1.42904 * 117.00154 * 177.90062 * 6 5 4 8 8 H 1.08995 * 109.50302 * 35.39026 * 7 6 5 9 9 C 1.53121 * 109.50078 * 275.31033 * 7 6 5 10 10 C 1.53121 * 109.15694 * 182.44099 * 9 7 6 11 11 C 1.53038 * 109.30816 * 57.59751 * 10 9 7 12 12 N 1.46845 * 109.52773 * 300.83894 * 11 10 9 13 13 C 1.46894 * 111.00648 * 185.83881 * 12 11 10 14 14 H 1.09005 * 109.47291 * 300.55751 * 13 12 11 15 15 C 1.52994 * 109.47403 * 180.55665 * 13 12 11 16 16 C 1.52997 * 109.46916 * 60.55325 * 13 12 11 17 17 C 1.53002 * 109.47036 * 185.32279 * 16 13 12 18 18 C 1.50700 * 109.47189 * 183.45253 * 17 16 13 19 19 H 1.08004 * 120.00054 * 0.02562 * 18 17 16 20 20 C 1.37874 * 120.00203 * 179.97438 * 18 17 16 21 21 N 1.31511 * 119.99932 * 0.02562 * 20 18 17 22 22 Si 1.86807 * 120.00195 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.47019 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.46790 * 119.99933 * 22 20 18 25 25 H 1.48493 * 109.47190 * 240.00042 * 22 20 18 26 26 C 1.46856 * 111.19534 * 61.73817 * 12 11 10 27 27 C 1.38732 * 119.88448 * 359.97438 * 5 4 3 28 28 C 1.38142 * 119.94607 * 0.02562 * 27 5 4 29 29 H 1.09001 * 109.46854 * 90.00157 * 1 2 3 30 30 H 1.09000 * 109.47476 * 210.00433 * 1 2 3 31 31 H 1.08996 * 109.47437 * 330.00747 * 1 2 3 32 32 H 1.08001 * 119.96649 * 359.97438 * 3 2 1 33 33 H 1.08006 * 120.02406 * 179.97438 * 4 3 2 34 34 H 1.08993 * 109.52408 * 302.31023 * 9 7 6 35 35 H 1.09004 * 109.52045 * 62.50235 * 9 7 6 36 36 H 1.09001 * 109.47232 * 297.65875 * 10 9 7 37 37 H 1.09000 * 109.53986 * 177.57743 * 10 9 7 38 38 H 1.09004 * 109.46592 * 180.82311 * 11 10 9 39 39 H 1.08996 * 109.45590 * 60.85336 * 11 10 9 40 40 H 1.08999 * 109.47332 * 60.00015 * 15 13 12 41 41 H 1.09001 * 109.47295 * 180.02562 * 15 13 12 42 42 H 1.08999 * 109.46873 * 299.99591 * 15 13 12 43 43 H 1.09002 * 109.47545 * 305.32129 * 16 13 12 44 44 H 1.08996 * 109.47210 * 65.32839 * 16 13 12 45 45 H 1.08999 * 109.47448 * 303.45508 * 17 16 13 46 46 H 1.08999 * 109.47085 * 63.45457 * 17 16 13 47 47 H 0.97000 * 120.00185 * 180.02562 * 21 20 18 48 48 H 1.08993 * 109.45978 * 178.24119 * 26 12 11 49 49 H 1.09006 * 109.45486 * 58.27926 * 26 12 11 50 50 H 1.08003 * 120.02799 * 179.97438 * 27 5 4 51 51 H 1.08006 * 119.97572 * 180.02562 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1981 0.0000 4 6 3.5786 1.2007 0.0005 5 6 4.2734 0.0000 0.0005 6 8 5.6324 0.0000 -0.0046 7 6 6.2813 -1.2723 0.0423 8 1 5.6981 -1.9994 -0.5227 9 6 6.3999 -1.7322 1.4980 10 6 7.1500 -3.0663 1.5440 11 6 8.5238 -2.8971 0.8912 12 7 8.3555 -2.4575 -0.4997 13 6 9.6466 -2.4178 -1.1993 14 1 10.3173 -1.7292 -0.6854 15 6 9.4328 -1.9431 -2.6379 16 6 10.2638 -3.8177 -1.2106 17 6 11.6654 -3.7522 -1.8204 18 6 12.2400 -5.1426 -1.9095 19 1 11.6629 -5.9884 -1.5659 20 6 13.5019 -5.3350 -2.4305 21 7 14.2044 -4.3051 -2.8494 22 14 14.2144 -7.0583 -2.5403 23 1 13.2315 -8.0352 -2.0064 24 1 14.5121 -7.3814 -3.9588 25 1 15.4655 -7.1284 -1.7435 26 6 7.6803 -1.1551 -0.5669 27 6 3.5786 -1.2007 0.0005 28 6 2.1972 -1.1981 0.0000 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8899 0.5139 31 1 -0.3634 0.8900 0.5137 32 1 1.6558 2.1326 -0.0004 33 1 4.1172 2.1369 0.0001 34 1 6.9492 -0.9861 2.0722 35 1 5.4038 -1.8590 1.9223 36 1 6.5807 -3.8221 1.0030 37 1 7.2758 -3.3783 2.5808 38 1 9.0544 -3.8492 0.9095 39 1 9.0976 -2.1511 1.4410 40 1 8.9931 -0.9457 -2.6299 41 1 10.3907 -1.9141 -3.1572 42 1 8.7621 -2.6317 -3.1519 43 1 10.3289 -4.1943 -0.1898 44 1 9.6398 -4.4851 -1.8050 45 1 11.6075 -3.3184 -2.8187 46 1 12.3065 -3.1338 -1.1922 47 1 15.0921 -4.4405 -3.2163 48 1 7.5981 -0.8420 -1.6077 49 1 8.2582 -0.4173 -0.0103 50 1 4.1172 -2.1369 0.0001 51 1 1.6557 -2.1326 0.0004 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172504739.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:20 Heat of formation + Delta-G solvation = -44.590606 kcal Electronic energy + Delta-G solvation = -26453.281857 eV Core-core repulsion = 22930.261637 eV Total energy + Delta-G solvation = -3523.020219 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.53678 -40.14377 -38.57140 -36.48860 -34.87676 -32.98862 -32.68246 -31.99425 -31.11683 -30.02194 -27.36907 -27.02485 -25.48981 -24.57488 -23.42176 -22.95036 -22.10529 -20.89599 -20.76886 -19.18467 -18.55140 -17.50791 -16.79259 -16.45222 -16.24860 -16.15174 -16.08480 -15.78969 -15.33503 -14.92074 -14.85202 -14.56669 -14.47375 -14.36680 -14.12416 -14.03524 -13.79853 -13.75273 -13.38750 -12.95538 -12.89513 -12.70501 -12.57768 -12.42886 -12.41361 -12.36497 -12.32663 -11.92417 -11.89164 -11.70145 -11.50517 -11.35401 -11.29973 -11.05680 -10.98460 -10.51946 -9.93802 -9.35161 -8.95791 -8.19155 -6.29327 0.40621 0.47822 1.39756 1.40118 1.53394 1.99372 2.41381 2.80860 3.02475 3.14159 3.62367 3.67371 3.87071 3.92728 3.93958 4.02270 4.05960 4.10643 4.17675 4.31691 4.37398 4.42863 4.47538 4.49129 4.51729 4.64300 4.71032 4.76449 4.81679 4.87046 4.89283 4.90530 4.94270 4.95982 5.01778 5.02529 5.11638 5.12650 5.20203 5.23406 5.30319 5.39271 5.41749 5.44313 5.54078 5.71414 5.78650 5.87879 5.89971 6.05711 6.12552 6.28859 6.48942 6.87913 7.39479 8.92735 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.029991 B = 0.002119 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.402919 B =13212.277550 C =13367.596135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.134 4.134 3 C -0.085 4.085 4 C -0.165 4.165 5 C 0.108 3.892 6 O -0.326 6.326 7 C 0.095 3.905 8 H 0.085 0.915 9 C -0.136 4.136 10 C -0.103 4.103 11 C 0.042 3.958 12 N -0.528 5.528 13 C 0.093 3.907 14 H 0.025 0.975 15 C -0.140 4.140 16 C -0.087 4.087 17 C 0.026 3.974 18 C -0.539 4.539 19 H 0.058 0.942 20 C -0.001 4.001 21 N -0.933 5.933 22 Si 0.963 3.037 23 H -0.262 1.262 24 H -0.278 1.278 25 H -0.279 1.279 26 C 0.059 3.941 27 C -0.214 4.214 28 C -0.087 4.087 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.149 0.851 33 H 0.133 0.867 34 H 0.064 0.936 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.091 0.909 38 H 0.080 0.920 39 H 0.029 0.971 40 H 0.066 0.934 41 H 0.050 0.950 42 H 0.062 0.938 43 H 0.053 0.947 44 H 0.054 0.946 45 H 0.002 0.998 46 H -0.015 1.015 47 H 0.263 0.737 48 H 0.086 0.914 49 H 0.034 0.966 50 H 0.135 0.865 51 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.482 9.213 8.643 30.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.134 4.134 3 C -0.103 4.103 4 C -0.184 4.184 5 C 0.063 3.937 6 O -0.239 6.239 7 C 0.039 3.961 8 H 0.103 0.897 9 C -0.173 4.173 10 C -0.141 4.141 11 C -0.086 4.086 12 N -0.255 5.255 13 C -0.015 4.015 14 H 0.043 0.957 15 C -0.198 4.198 16 C -0.125 4.125 17 C -0.011 4.011 18 C -0.577 4.577 19 H 0.077 0.923 20 C -0.199 4.199 21 N -0.573 5.573 22 Si 0.788 3.212 23 H -0.186 1.186 24 H -0.204 1.204 25 H -0.205 1.205 26 C -0.069 4.069 27 C -0.232 4.232 28 C -0.105 4.105 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.167 0.833 33 H 0.151 0.849 34 H 0.083 0.917 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.109 0.891 38 H 0.098 0.902 39 H 0.047 0.953 40 H 0.085 0.915 41 H 0.069 0.931 42 H 0.081 0.919 43 H 0.072 0.928 44 H 0.072 0.928 45 H 0.021 0.979 46 H 0.003 0.997 47 H 0.071 0.929 48 H 0.105 0.895 49 H 0.052 0.948 50 H 0.152 0.848 51 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -27.494 9.085 8.334 30.131 hybrid contribution 1.713 -0.213 0.124 1.730 sum -25.781 8.872 8.458 28.547 Atomic orbital electron populations 1.20757 0.89231 1.03555 1.02847 1.20204 0.97672 0.92811 1.02752 1.21138 0.92482 0.98956 0.97701 1.20659 0.94622 0.96262 1.06859 1.19263 0.82162 0.95015 0.97271 1.86021 1.16945 1.32529 1.88448 1.22331 0.92926 0.83528 0.97348 0.89710 1.22072 1.01821 0.98069 0.95381 1.21499 0.94359 0.96682 1.01580 1.22309 0.98151 1.00720 0.87393 1.61861 1.21635 1.26860 1.15106 1.21517 0.88144 0.96906 0.94930 0.95686 1.21879 1.01723 1.01072 0.95104 1.21498 0.95990 0.94825 1.00136 1.19031 0.91859 0.95387 0.94827 1.21717 1.00995 0.94406 1.40579 0.92339 1.25963 0.97656 1.01199 0.95080 1.70101 1.12052 1.32055 1.43134 0.85425 0.78302 0.79613 0.77871 1.18591 1.20417 1.20463 1.21978 0.92844 0.90382 1.01678 1.21458 0.95982 0.97308 1.08474 1.21134 0.92980 0.98853 0.97574 0.90767 0.90922 0.90650 0.83293 0.84945 0.91677 0.90306 0.90534 0.89083 0.90221 0.95282 0.91497 0.93095 0.91863 0.92844 0.92754 0.97932 0.99675 0.92864 0.89534 0.94756 0.84783 0.84098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.98 10.01 71.24 0.71 -0.27 16 2 C -0.13 -2.01 5.88 -19.85 -0.12 -2.13 16 3 C -0.08 -1.33 9.69 22.25 0.22 -1.11 16 4 C -0.17 -3.24 9.99 22.36 0.22 -3.02 16 5 C 0.11 2.41 6.59 22.50 0.15 2.56 16 6 O -0.33 -8.05 9.80 -92.37 -0.91 -8.96 16 7 C 0.10 2.18 2.29 30.65 0.07 2.25 16 8 H 0.09 1.91 5.95 -2.39 -0.01 1.90 16 9 C -0.14 -2.73 5.38 30.68 0.17 -2.57 16 10 C -0.10 -2.07 6.09 30.65 0.19 -1.89 16 11 C 0.04 1.10 5.24 86.33 0.45 1.56 16 12 N -0.53 -15.42 4.52 -871.13 -3.94 -19.36 16 13 C 0.09 3.25 2.14 44.91 0.10 3.35 16 14 H 0.03 0.94 8.14 -2.38 -0.02 0.92 16 15 C -0.14 -4.67 8.58 71.98 0.62 -4.06 16 16 C -0.09 -3.61 4.56 30.59 0.14 -3.47 16 17 C 0.03 1.40 4.81 29.85 0.14 1.54 16 18 C -0.54 -30.92 9.11 25.60 0.23 -30.69 16 19 H 0.06 3.24 7.74 -2.91 -0.02 3.21 16 20 C 0.00 -0.09 5.46 84.65 0.46 0.38 16 21 N -0.93 -57.15 13.29 21.45 0.28 -56.87 16 22 Si 0.96 44.64 29.54 68.60 2.03 46.66 16 23 H -0.26 -11.57 7.11 99.48 0.71 -10.87 16 24 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 25 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 26 C 0.06 1.55 4.77 86.32 0.41 1.97 16 27 C -0.21 -4.20 8.42 22.37 0.19 -4.01 16 28 C -0.09 -1.44 9.69 22.25 0.22 -1.22 16 29 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.07 0.55 8.08 -2.39 -0.02 0.53 16 31 H 0.07 0.53 8.08 -2.39 -0.02 0.51 16 32 H 0.15 1.53 8.06 -2.91 -0.02 1.51 16 33 H 0.13 2.36 8.06 -2.91 -0.02 2.33 16 34 H 0.06 1.38 8.14 -2.39 -0.02 1.37 16 35 H 0.08 1.43 7.44 -2.38 -0.02 1.41 16 36 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.08 2.28 5.92 -2.39 -0.01 2.26 16 39 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.07 1.90 6.21 -2.39 -0.01 1.89 16 41 H 0.05 1.91 6.50 -2.39 -0.02 1.89 16 42 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 43 H 0.05 2.16 6.03 -2.39 -0.01 2.15 16 44 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 45 H 0.00 0.13 6.42 -2.39 -0.02 0.12 16 46 H -0.02 -0.87 8.14 -2.39 -0.02 -0.89 16 47 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 48 H 0.09 2.29 5.89 -2.39 -0.01 2.27 16 49 H 0.03 0.94 8.14 -2.38 -0.02 0.92 16 50 H 0.13 2.46 5.68 -2.91 -0.02 2.44 16 51 H 0.14 1.70 8.06 -2.91 -0.02 1.67 16 Total: -1.00 -65.55 391.04 2.92 -62.64 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: 0.89 Total: 16.72 kcal Atomic # 6 Polarization: -45.39 SS G_CDS: 4.57 Total: -40.83 kcal Atomic # 7 Polarization: -72.58 SS G_CDS: -3.66 Total: -76.23 kcal Atomic # 8 Polarization: -8.05 SS G_CDS: -0.91 Total: -8.96 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.66 kcal Total: -65.55 2.92 -62.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172504739.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.045 kcal (2) G-P(sol) polarization free energy of solvation -65.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds