Wall clock time and date at job start Tue Mar 31 2020 11:43:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38273 * 119.94121 * 2 1 4 4 C 1.38152 * 120.05248 * 180.02562 * 3 2 1 5 5 C 1.38733 * 119.94133 * 0.02562 * 4 3 2 6 6 O 1.35903 * 120.04911 * 180.02562 * 5 4 3 7 7 C 1.42898 * 117.00463 * 2.71068 * 6 5 4 8 8 H 1.09001 * 109.50231 * 323.93368 * 7 6 5 9 9 C 1.53116 * 109.50188 * 84.01085 * 7 6 5 10 10 C 1.53117 * 109.16109 * 177.63552 * 9 7 6 11 11 C 1.53041 * 109.31171 * 302.33119 * 10 9 7 12 12 N 1.46918 * 109.48036 * 59.15677 * 11 10 9 13 13 C 1.46902 * 110.99020 * 174.18174 * 12 11 10 14 14 H 1.09003 * 109.46859 * 66.55131 * 13 12 11 15 15 C 1.52991 * 109.47609 * 186.55278 * 13 12 11 16 16 C 1.53004 * 109.47076 * 306.55778 * 13 12 11 17 17 C 1.52995 * 109.47402 * 176.21769 * 16 13 12 18 18 C 1.50704 * 109.47158 * 176.29118 * 17 16 13 19 19 H 1.07998 * 119.99733 * 359.97438 * 18 17 16 20 20 C 1.37877 * 119.99801 * 179.97438 * 18 17 16 21 21 N 1.31516 * 120.00328 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99751 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46804 * 60.00326 * 22 20 18 24 24 H 1.48507 * 109.46995 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.47511 * 300.00184 * 22 20 18 26 26 C 1.46845 * 111.22129 * 298.28336 * 12 11 10 27 27 C 1.38727 * 119.89413 * 0.27084 * 5 4 3 28 28 C 1.38151 * 119.93895 * 359.47443 * 27 5 4 29 29 H 1.09000 * 109.47162 * 89.99970 * 1 2 3 30 30 H 1.08999 * 109.46850 * 210.00294 * 1 2 3 31 31 H 1.09003 * 109.46731 * 330.00117 * 1 2 3 32 32 H 1.07993 * 119.97315 * 0.02562 * 3 2 1 33 33 H 1.07991 * 120.02650 * 179.97438 * 4 3 2 34 34 H 1.09005 * 109.52182 * 57.73622 * 9 7 6 35 35 H 1.08997 * 109.52537 * 297.54365 * 9 7 6 36 36 H 1.08998 * 109.50286 * 62.28792 * 10 9 7 37 37 H 1.09001 * 109.50393 * 182.36987 * 10 9 7 38 38 H 1.09000 * 109.46029 * 179.21522 * 11 10 9 39 39 H 1.08998 * 109.45873 * 299.17777 * 11 10 9 40 40 H 1.09006 * 109.47280 * 179.97438 * 15 13 12 41 41 H 1.08996 * 109.47230 * 300.00181 * 15 13 12 42 42 H 1.09003 * 109.47131 * 60.00019 * 15 13 12 43 43 H 1.09009 * 109.46662 * 296.21913 * 16 13 12 44 44 H 1.08998 * 109.47302 * 56.21381 * 16 13 12 45 45 H 1.09000 * 109.46964 * 296.29143 * 17 16 13 46 46 H 1.09001 * 109.47070 * 56.28922 * 17 16 13 47 47 H 0.96998 * 119.99860 * 179.97438 * 21 20 18 48 48 H 1.08997 * 109.46460 * 301.72524 * 26 12 11 49 49 H 1.09006 * 109.45732 * 181.75190 * 26 12 11 50 50 H 1.08001 * 120.02825 * 179.72535 * 27 5 4 51 51 H 1.07999 * 119.96750 * 180.27024 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1982 0.0000 4 6 3.5787 1.2009 -0.0005 5 6 4.2734 0.0000 -0.0016 6 8 5.6324 0.0001 -0.0016 7 6 6.2812 1.2719 0.0597 8 1 5.7064 2.0015 -0.5107 9 6 6.3791 1.7259 1.5187 10 6 7.1274 3.0603 1.5807 11 6 8.5111 2.8945 0.9481 12 7 8.3628 2.4594 -0.4473 13 6 9.6641 2.4225 -1.1281 14 1 10.2836 1.6423 -0.6856 15 6 9.4541 2.1254 -2.6141 16 6 10.3600 3.7761 -0.9719 17 6 11.7539 3.7084 -1.5989 18 6 12.4038 5.0661 -1.5263 19 1 11.8753 5.8945 -1.0781 20 6 13.6732 5.2507 -2.0321 21 7 14.3169 4.2418 -2.5774 22 14 14.4785 6.9338 -1.9427 23 1 14.5938 7.3525 -0.5226 24 1 15.8321 6.8677 -2.5501 25 1 13.6504 7.9189 -2.6837 26 6 7.6890 1.1572 -0.5293 27 6 3.5787 -1.2007 -0.0078 28 6 2.1972 -1.1980 -0.0020 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5138 32 1 1.6558 2.1326 0.0004 33 1 4.1172 2.1369 -0.0010 34 1 6.9205 0.9775 2.0976 35 1 5.3772 1.8507 1.9294 36 1 6.5659 3.8181 1.0343 37 1 7.2372 3.3680 2.6206 38 1 9.0407 3.8467 0.9783 39 1 9.0770 2.1466 1.5034 40 1 10.4196 2.0985 -3.1193 41 1 8.9584 1.1611 -2.7254 42 1 8.8346 2.9056 -3.0566 43 1 9.7731 4.5462 -1.4728 44 1 10.4493 4.0187 0.0870 45 1 12.3619 2.9850 -1.0557 46 1 11.6688 3.4016 -2.6414 47 1 15.2097 4.3718 -2.9335 48 1 8.2588 0.4174 0.0328 49 1 7.6221 0.8481 -1.5725 50 1 4.1174 -2.1368 -0.0132 51 1 1.6559 -2.1325 -0.0024 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172504742.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:24 Heat of formation + Delta-G solvation = -29.201342 kcal Electronic energy + Delta-G solvation = -26451.489436 eV Core-core repulsion = 22929.136545 eV Total energy + Delta-G solvation = -3522.352891 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.67082 -39.12766 -37.65287 -35.07882 -33.01078 -32.29420 -31.31464 -31.08938 -30.10322 -28.46697 -26.56527 -25.45677 -24.15782 -23.64957 -22.40595 -21.53721 -21.24294 -19.90102 -19.28074 -18.28584 -16.79615 -16.14438 -15.75521 -15.45391 -15.30115 -14.88072 -14.78708 -14.50564 -14.24576 -13.98057 -13.77505 -13.74550 -13.60528 -13.27273 -13.11789 -12.82405 -12.46559 -12.34648 -12.08434 -11.83826 -11.72962 -11.56103 -11.53187 -11.20363 -11.15382 -10.97223 -10.86858 -10.68909 -10.59274 -10.55026 -10.31755 -10.03804 -9.56081 -9.30232 -9.23151 -9.02956 -8.32099 -8.22149 -8.10920 -5.98846 -4.00747 1.11041 1.20150 2.90956 3.33774 3.38173 3.40659 3.51868 4.16525 4.47078 4.52274 4.58573 4.61522 4.63929 4.73938 4.87541 4.99165 5.06920 5.12298 5.14966 5.30657 5.34108 5.36813 5.41561 5.48529 5.53795 5.54163 5.57408 5.64800 5.72401 5.77056 5.80347 5.82737 5.94516 5.96261 6.07351 6.09477 6.16994 6.23074 6.31970 6.37072 6.40277 6.57725 6.63772 6.71612 6.75814 7.10717 7.25842 7.36563 7.40500 7.69672 7.84775 8.01471 8.44599 9.06058 9.62933 11.12404 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.031739 B = 0.002111 C = 0.002078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.990576 B =13259.404538 C =13468.445395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.132 4.132 3 C -0.079 4.079 4 C -0.206 4.206 5 C 0.134 3.866 6 O -0.311 6.311 7 C 0.089 3.911 8 H 0.083 0.917 9 C -0.143 4.143 10 C -0.112 4.112 11 C 0.044 3.956 12 N -0.530 5.530 13 C 0.084 3.916 14 H 0.037 0.963 15 C -0.143 4.143 16 C -0.105 4.105 17 C 0.022 3.978 18 C -0.519 4.519 19 H 0.054 0.946 20 C 0.056 3.944 21 N -0.896 5.896 22 Si 0.891 3.109 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.277 1.277 26 C 0.059 3.941 27 C -0.153 4.153 28 C -0.082 4.082 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.123 0.877 33 H 0.132 0.868 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.093 0.907 39 H 0.033 0.967 40 H 0.072 0.928 41 H 0.043 0.957 42 H 0.059 0.941 43 H 0.057 0.943 44 H 0.050 0.950 45 H 0.012 0.988 46 H 0.022 0.978 47 H 0.260 0.740 48 H 0.040 0.960 49 H 0.086 0.914 50 H 0.129 0.871 51 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.447 -9.629 7.013 28.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.132 4.132 3 C -0.098 4.098 4 C -0.224 4.224 5 C 0.088 3.912 6 O -0.224 6.224 7 C 0.033 3.967 8 H 0.101 0.899 9 C -0.181 4.181 10 C -0.150 4.150 11 C -0.083 4.083 12 N -0.257 5.257 13 C -0.022 4.022 14 H 0.055 0.945 15 C -0.201 4.201 16 C -0.143 4.143 17 C -0.016 4.016 18 C -0.557 4.557 19 H 0.072 0.928 20 C -0.145 4.145 21 N -0.535 5.535 22 Si 0.719 3.281 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.202 1.202 26 C -0.069 4.069 27 C -0.171 4.171 28 C -0.100 4.100 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.141 0.859 33 H 0.150 0.850 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.111 0.889 39 H 0.051 0.949 40 H 0.091 0.909 41 H 0.061 0.939 42 H 0.078 0.922 43 H 0.076 0.924 44 H 0.068 0.932 45 H 0.031 0.969 46 H 0.040 0.960 47 H 0.070 0.930 48 H 0.058 0.942 49 H 0.105 0.895 50 H 0.147 0.853 51 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -25.425 -9.502 6.678 27.952 hybrid contribution 1.054 0.486 0.472 1.252 sum -24.371 -9.016 7.149 26.951 Atomic orbital electron populations 1.20705 0.91213 1.02497 1.02073 1.19815 0.96139 0.93101 1.04186 1.20837 0.93304 0.97646 0.97965 1.21351 0.95283 0.97592 1.08206 1.19021 0.82609 0.94041 0.95519 1.86063 1.16037 1.32502 1.87826 1.22448 0.94032 0.83441 0.96786 0.89909 1.22139 1.01327 0.98476 0.96154 1.21546 0.96185 0.96478 1.00823 1.22274 0.96361 1.01699 0.87989 1.61927 1.22969 1.26041 1.14721 1.21770 0.86823 0.99367 0.94285 0.94490 1.21911 1.02568 1.00284 0.95317 1.21807 0.98493 0.93492 1.00459 1.19146 0.89383 0.96935 0.96111 1.21208 1.00217 0.95767 1.38537 0.92806 1.25018 0.97378 0.96663 0.95411 1.69951 1.13081 1.30590 1.39896 0.86674 0.78476 0.84664 0.78266 1.20316 1.21332 1.20242 1.21959 0.91886 0.91442 1.01610 1.20436 0.93760 0.96363 1.06588 1.20818 0.92972 0.97696 0.98519 0.91508 0.91796 0.91802 0.85936 0.85016 0.91190 0.91493 0.90944 0.91014 0.88928 0.94899 0.90886 0.93852 0.92161 0.92428 0.93176 0.96949 0.95995 0.92997 0.94152 0.89537 0.85304 0.85599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.65 10.01 36.01 0.36 -0.29 16 2 C -0.13 -1.14 5.88 -104.60 -0.62 -1.75 16 3 C -0.08 -0.73 9.69 -39.60 -0.38 -1.11 16 4 C -0.21 -2.14 8.39 -39.43 -0.33 -2.47 16 5 C 0.13 1.54 6.58 -39.22 -0.26 1.28 16 6 O -0.31 -3.92 9.81 -19.43 -0.19 -4.11 16 7 C 0.09 1.06 2.29 -26.65 -0.06 1.00 16 8 H 0.08 0.97 5.97 -51.93 -0.31 0.66 16 9 C -0.14 -1.55 5.37 -26.61 -0.14 -1.69 16 10 C -0.11 -1.23 6.09 -26.65 -0.16 -1.39 16 11 C 0.04 0.60 5.09 -3.79 -0.02 0.58 16 12 N -0.53 -7.82 4.53 -226.63 -1.03 -8.84 16 13 C 0.08 1.46 2.16 -67.71 -0.15 1.31 16 14 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 15 C -0.14 -2.36 8.77 37.15 0.33 -2.04 16 16 C -0.10 -2.13 4.33 -26.73 -0.12 -2.24 16 17 C 0.02 0.55 4.79 -27.88 -0.13 0.42 16 18 C -0.52 -14.62 9.11 -34.44 -0.31 -14.93 16 19 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 20 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 21 N -0.90 -26.86 13.29 55.43 0.74 -26.12 16 22 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 25 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 26 C 0.06 0.79 4.91 -3.83 -0.02 0.77 16 27 C -0.15 -1.56 9.99 -39.43 -0.39 -1.96 16 28 C -0.08 -0.72 9.69 -39.61 -0.38 -1.10 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.32 8.08 -51.93 -0.42 -0.10 16 31 H 0.06 0.34 8.08 -51.93 -0.42 -0.08 16 32 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 33 H 0.13 1.29 5.67 -52.49 -0.30 0.99 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.07 0.67 7.39 -51.93 -0.38 0.29 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.09 1.35 5.79 -51.93 -0.30 1.05 16 39 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.07 1.32 6.45 -51.93 -0.33 0.99 16 41 H 0.04 0.62 6.33 -51.93 -0.33 0.29 16 42 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 43 H 0.06 1.19 8.14 -51.92 -0.42 0.77 16 44 H 0.05 0.99 5.97 -51.93 -0.31 0.68 16 45 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 46 H 0.02 0.58 6.35 -51.93 -0.33 0.25 16 47 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 48 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 49 H 0.09 1.17 6.08 -51.93 -0.32 0.85 16 50 H 0.13 1.18 8.06 -52.49 -0.42 0.75 16 51 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 LS Contribution 390.91 15.07 5.89 5.89 Total: -1.00 -30.11 390.91 -11.29 -41.40 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -8.79 Total: -0.78 kcal Atomic # 6 Polarization: -21.20 SS G_CDS: -2.89 Total: -24.09 kcal Atomic # 7 Polarization: -34.67 SS G_CDS: -0.29 Total: -34.96 kcal Atomic # 8 Polarization: -3.92 SS G_CDS: -0.19 Total: -4.11 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -30.11 -11.29 -41.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172504742.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.196 kcal (2) G-P(sol) polarization free energy of solvation -30.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds