Wall clock time and date at job start Tue Mar 31 2020 11:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38273 * 119.94121 * 2 1 4 4 C 1.38152 * 120.05248 * 180.02562 * 3 2 1 5 5 C 1.38733 * 119.94133 * 0.02562 * 4 3 2 6 6 O 1.35903 * 120.04911 * 180.02562 * 5 4 3 7 7 C 1.42898 * 117.00463 * 2.71068 * 6 5 4 8 8 H 1.09001 * 109.50231 * 323.93368 * 7 6 5 9 9 C 1.53116 * 109.50188 * 84.01085 * 7 6 5 10 10 C 1.53117 * 109.16109 * 177.63552 * 9 7 6 11 11 C 1.53041 * 109.31171 * 302.33119 * 10 9 7 12 12 N 1.46918 * 109.48036 * 59.15677 * 11 10 9 13 13 C 1.46902 * 110.99020 * 174.18174 * 12 11 10 14 14 H 1.09003 * 109.46859 * 66.55131 * 13 12 11 15 15 C 1.52991 * 109.47609 * 186.55278 * 13 12 11 16 16 C 1.53004 * 109.47076 * 306.55778 * 13 12 11 17 17 C 1.52995 * 109.47402 * 176.21769 * 16 13 12 18 18 C 1.50704 * 109.47158 * 176.29118 * 17 16 13 19 19 H 1.07998 * 119.99733 * 359.97438 * 18 17 16 20 20 C 1.37877 * 119.99801 * 179.97438 * 18 17 16 21 21 N 1.31516 * 120.00328 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99751 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46804 * 60.00326 * 22 20 18 24 24 H 1.48507 * 109.46995 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.47511 * 300.00184 * 22 20 18 26 26 C 1.46845 * 111.22129 * 298.28336 * 12 11 10 27 27 C 1.38727 * 119.89413 * 0.27084 * 5 4 3 28 28 C 1.38151 * 119.93895 * 359.47443 * 27 5 4 29 29 H 1.09000 * 109.47162 * 89.99970 * 1 2 3 30 30 H 1.08999 * 109.46850 * 210.00294 * 1 2 3 31 31 H 1.09003 * 109.46731 * 330.00117 * 1 2 3 32 32 H 1.07993 * 119.97315 * 0.02562 * 3 2 1 33 33 H 1.07991 * 120.02650 * 179.97438 * 4 3 2 34 34 H 1.09005 * 109.52182 * 57.73622 * 9 7 6 35 35 H 1.08997 * 109.52537 * 297.54365 * 9 7 6 36 36 H 1.08998 * 109.50286 * 62.28792 * 10 9 7 37 37 H 1.09001 * 109.50393 * 182.36987 * 10 9 7 38 38 H 1.09000 * 109.46029 * 179.21522 * 11 10 9 39 39 H 1.08998 * 109.45873 * 299.17777 * 11 10 9 40 40 H 1.09006 * 109.47280 * 179.97438 * 15 13 12 41 41 H 1.08996 * 109.47230 * 300.00181 * 15 13 12 42 42 H 1.09003 * 109.47131 * 60.00019 * 15 13 12 43 43 H 1.09009 * 109.46662 * 296.21913 * 16 13 12 44 44 H 1.08998 * 109.47302 * 56.21381 * 16 13 12 45 45 H 1.09000 * 109.46964 * 296.29143 * 17 16 13 46 46 H 1.09001 * 109.47070 * 56.28922 * 17 16 13 47 47 H 0.96998 * 119.99860 * 179.97438 * 21 20 18 48 48 H 1.08997 * 109.46460 * 301.72524 * 26 12 11 49 49 H 1.09006 * 109.45732 * 181.75190 * 26 12 11 50 50 H 1.08001 * 120.02825 * 179.72535 * 27 5 4 51 51 H 1.07999 * 119.96750 * 180.27024 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1982 0.0000 4 6 3.5787 1.2009 -0.0005 5 6 4.2734 0.0000 -0.0016 6 8 5.6324 0.0001 -0.0016 7 6 6.2812 1.2719 0.0597 8 1 5.7064 2.0015 -0.5107 9 6 6.3791 1.7259 1.5187 10 6 7.1274 3.0603 1.5807 11 6 8.5111 2.8945 0.9481 12 7 8.3628 2.4594 -0.4473 13 6 9.6641 2.4225 -1.1281 14 1 10.2836 1.6423 -0.6856 15 6 9.4541 2.1254 -2.6141 16 6 10.3600 3.7761 -0.9719 17 6 11.7539 3.7084 -1.5989 18 6 12.4038 5.0661 -1.5263 19 1 11.8753 5.8945 -1.0781 20 6 13.6732 5.2507 -2.0321 21 7 14.3169 4.2418 -2.5774 22 14 14.4785 6.9338 -1.9427 23 1 14.5938 7.3525 -0.5226 24 1 15.8321 6.8677 -2.5501 25 1 13.6504 7.9189 -2.6837 26 6 7.6890 1.1572 -0.5293 27 6 3.5787 -1.2007 -0.0078 28 6 2.1972 -1.1980 -0.0020 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5138 32 1 1.6558 2.1326 0.0004 33 1 4.1172 2.1369 -0.0010 34 1 6.9205 0.9775 2.0976 35 1 5.3772 1.8507 1.9294 36 1 6.5659 3.8181 1.0343 37 1 7.2372 3.3680 2.6206 38 1 9.0407 3.8467 0.9783 39 1 9.0770 2.1466 1.5034 40 1 10.4196 2.0985 -3.1193 41 1 8.9584 1.1611 -2.7254 42 1 8.8346 2.9056 -3.0566 43 1 9.7731 4.5462 -1.4728 44 1 10.4493 4.0187 0.0870 45 1 12.3619 2.9850 -1.0557 46 1 11.6688 3.4016 -2.6414 47 1 15.2097 4.3718 -2.9335 48 1 8.2588 0.4174 0.0328 49 1 7.6221 0.8481 -1.5725 50 1 4.1174 -2.1368 -0.0132 51 1 1.6559 -2.1325 -0.0024 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172504742.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:23 Heat of formation + Delta-G solvation = -44.252507 kcal Electronic energy + Delta-G solvation = -26452.142103 eV Core-core repulsion = 22929.136545 eV Total energy + Delta-G solvation = -3523.005558 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.53684 -40.14397 -38.57790 -36.48361 -34.86442 -32.98631 -32.68082 -31.99277 -31.09998 -30.04953 -27.36390 -27.00970 -25.46976 -24.58876 -23.44532 -22.95459 -22.12287 -20.90364 -20.72826 -19.18185 -18.54872 -17.48886 -16.80118 -16.45258 -16.24310 -16.15739 -16.03949 -15.83066 -15.34386 -14.91742 -14.85992 -14.57346 -14.46938 -14.36312 -14.11289 -14.02849 -13.77425 -13.74821 -13.40241 -12.95071 -12.85798 -12.72971 -12.56906 -12.44254 -12.41515 -12.38998 -12.32709 -11.92538 -11.88605 -11.69341 -11.49996 -11.37974 -11.27318 -11.06684 -10.98204 -10.50339 -9.93781 -9.35691 -8.95905 -8.18472 -6.28838 0.40514 0.47739 1.40191 1.43058 1.50877 1.99146 2.41783 2.80731 3.02490 3.14648 3.61878 3.67379 3.87161 3.92676 3.94390 4.01396 4.06265 4.11528 4.17372 4.31768 4.37385 4.43093 4.47518 4.49261 4.51921 4.64112 4.71157 4.76493 4.81510 4.86860 4.89228 4.90536 4.94940 4.96403 5.01882 5.02349 5.11532 5.12581 5.20301 5.24281 5.30318 5.39673 5.41706 5.44247 5.53595 5.71353 5.78870 5.87763 5.89841 6.05569 6.11888 6.28816 6.48823 6.87933 7.39788 8.92964 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.031739 B = 0.002111 C = 0.002078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.990576 B =13259.404538 C =13468.445395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.134 4.134 3 C -0.087 4.087 4 C -0.213 4.213 5 C 0.108 3.892 6 O -0.326 6.326 7 C 0.096 3.904 8 H 0.085 0.915 9 C -0.136 4.136 10 C -0.104 4.104 11 C 0.040 3.960 12 N -0.528 5.528 13 C 0.092 3.908 14 H 0.025 0.975 15 C -0.138 4.138 16 C -0.089 4.089 17 C 0.027 3.973 18 C -0.541 4.541 19 H 0.059 0.941 20 C -0.001 4.001 21 N -0.933 5.933 22 Si 0.963 3.037 23 H -0.268 1.268 24 H -0.284 1.284 25 H -0.267 1.267 26 C 0.061 3.939 27 C -0.166 4.166 28 C -0.085 4.085 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.141 0.859 33 H 0.135 0.865 34 H 0.064 0.936 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.090 0.910 38 H 0.082 0.918 39 H 0.028 0.972 40 H 0.050 0.950 41 H 0.064 0.936 42 H 0.062 0.938 43 H 0.055 0.945 44 H 0.055 0.945 45 H -0.016 1.016 46 H 0.003 0.997 47 H 0.263 0.737 48 H 0.034 0.966 49 H 0.084 0.916 50 H 0.132 0.868 51 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.843 -8.854 7.843 30.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.134 4.134 3 C -0.105 4.105 4 C -0.232 4.232 5 C 0.063 3.937 6 O -0.240 6.240 7 C 0.039 3.961 8 H 0.103 0.897 9 C -0.174 4.174 10 C -0.141 4.141 11 C -0.087 4.087 12 N -0.254 5.254 13 C -0.015 4.015 14 H 0.043 0.957 15 C -0.195 4.195 16 C -0.127 4.127 17 C -0.011 4.011 18 C -0.579 4.579 19 H 0.077 0.923 20 C -0.199 4.199 21 N -0.573 5.573 22 Si 0.787 3.213 23 H -0.192 1.192 24 H -0.209 1.209 25 H -0.192 1.192 26 C -0.067 4.067 27 C -0.184 4.184 28 C -0.103 4.103 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.159 0.841 33 H 0.152 0.848 34 H 0.083 0.917 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.109 0.891 38 H 0.100 0.900 39 H 0.046 0.954 40 H 0.069 0.931 41 H 0.083 0.917 42 H 0.081 0.919 43 H 0.074 0.926 44 H 0.073 0.927 45 H 0.003 0.997 46 H 0.021 0.979 47 H 0.071 0.929 48 H 0.052 0.948 49 H 0.103 0.897 50 H 0.150 0.850 51 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -27.847 -8.729 7.519 30.136 hybrid contribution 1.726 0.171 0.210 1.748 sum -26.121 -8.558 7.729 28.553 Atomic orbital electron populations 1.20759 0.89226 1.03555 1.02850 1.20204 0.97674 0.92808 1.02742 1.21137 0.92974 0.98852 0.97568 1.21459 0.95982 0.97297 1.08455 1.19264 0.82146 0.95024 0.97285 1.86020 1.16968 1.32585 1.88413 1.22320 0.92836 0.83555 0.97362 0.89684 1.22076 1.01850 0.98105 0.95349 1.21503 0.94273 0.96670 1.01687 1.22351 0.98163 1.00848 0.87351 1.61892 1.21124 1.26925 1.15449 1.21520 0.87905 0.96995 0.95112 0.95707 1.21827 1.01532 1.01617 0.94517 1.21556 0.95752 0.95326 1.00077 1.19029 0.91827 0.95228 0.95002 1.21660 1.00845 0.96879 1.38512 0.92304 1.25962 0.98103 1.00898 0.94896 1.70090 1.13494 1.32955 1.40751 0.85535 0.77391 0.79564 0.78760 1.19247 1.20932 1.19171 1.21946 0.92811 0.90355 1.01634 1.20663 0.94628 0.96258 1.06864 1.21138 0.92472 0.98963 0.97707 0.90755 0.90658 0.90919 0.84081 0.84770 0.91724 0.90293 0.90481 0.89117 0.89982 0.95357 0.93141 0.91681 0.91934 0.92640 0.92685 0.99726 0.97862 0.92866 0.94807 0.89723 0.84966 0.83300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.98 10.01 71.24 0.71 -0.27 16 2 C -0.13 -2.00 5.88 -19.85 -0.12 -2.12 16 3 C -0.09 -1.43 9.69 22.26 0.22 -1.21 16 4 C -0.21 -4.18 8.39 22.37 0.19 -3.99 16 5 C 0.11 2.41 6.58 22.51 0.15 2.56 16 6 O -0.33 -8.09 9.81 -92.45 -0.91 -9.00 16 7 C 0.10 2.19 2.29 30.65 0.07 2.26 16 8 H 0.09 1.91 5.97 -2.39 -0.01 1.90 16 9 C -0.14 -2.75 5.37 30.67 0.16 -2.59 16 10 C -0.10 -2.08 6.09 30.65 0.19 -1.90 16 11 C 0.04 1.07 5.09 86.31 0.44 1.51 16 12 N -0.53 -15.40 4.53 -870.92 -3.94 -19.34 16 13 C 0.09 3.24 2.16 44.91 0.10 3.34 16 14 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 15 C -0.14 -4.61 8.77 71.98 0.63 -3.98 16 16 C -0.09 -3.71 4.33 30.59 0.13 -3.57 16 17 C 0.03 1.41 4.79 29.85 0.14 1.55 16 18 C -0.54 -30.96 9.11 25.60 0.23 -30.72 16 19 H 0.06 3.23 7.74 -2.91 -0.02 3.20 16 20 C 0.00 -0.06 5.46 84.65 0.46 0.41 16 21 N -0.93 -57.11 13.29 21.45 0.28 -56.83 16 22 Si 0.96 44.52 29.54 68.60 2.03 46.55 16 23 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 24 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 25 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 26 C 0.06 1.60 4.91 86.33 0.42 2.02 16 27 C -0.17 -3.25 9.99 22.37 0.22 -3.02 16 28 C -0.08 -1.33 9.69 22.25 0.22 -1.11 16 29 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.07 0.53 8.08 -2.39 -0.02 0.51 16 31 H 0.07 0.55 8.08 -2.39 -0.02 0.53 16 32 H 0.14 1.68 8.06 -2.91 -0.02 1.66 16 33 H 0.13 2.45 5.67 -2.92 -0.02 2.44 16 34 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 35 H 0.08 1.43 7.39 -2.39 -0.02 1.42 16 36 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.08 2.35 5.79 -2.39 -0.01 2.33 16 39 H 0.03 0.77 8.14 -2.39 -0.02 0.76 16 40 H 0.05 1.90 6.45 -2.38 -0.02 1.89 16 41 H 0.06 1.87 6.33 -2.39 -0.02 1.85 16 42 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 43 H 0.05 2.31 8.14 -2.38 -0.02 2.29 16 44 H 0.05 2.21 5.97 -2.39 -0.01 2.19 16 45 H -0.02 -0.90 8.14 -2.39 -0.02 -0.92 16 46 H 0.00 0.17 6.35 -2.39 -0.02 0.16 16 47 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 48 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 49 H 0.08 2.25 6.08 -2.38 -0.01 2.23 16 50 H 0.13 2.36 8.06 -2.91 -0.02 2.34 16 51 H 0.15 1.53 8.06 -2.91 -0.02 1.51 16 Total: -1.00 -65.34 390.91 2.92 -62.42 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: 0.89 Total: 17.03 kcal Atomic # 6 Polarization: -45.40 SS G_CDS: 4.57 Total: -40.83 kcal Atomic # 7 Polarization: -72.51 SS G_CDS: -3.66 Total: -76.17 kcal Atomic # 8 Polarization: -8.09 SS G_CDS: -0.91 Total: -9.00 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -65.34 2.92 -62.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172504742.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.166 kcal (2) G-P(sol) polarization free energy of solvation -65.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds