Wall clock time and date at job start Tue Mar 31 2020 11:35:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38267 * 119.94044 * 2 1 4 4 C 1.38147 * 120.05159 * 179.97438 * 3 2 1 5 5 C 1.38734 * 119.94536 * 0.24924 * 4 3 2 6 6 O 1.35905 * 120.05368 * 179.74397 * 5 4 3 7 7 C 1.42900 * 117.00135 * 5.54323 * 6 5 4 8 8 C 1.53122 * 109.52010 * 274.77281 * 7 6 5 9 9 C 1.53041 * 109.27726 * 182.43900 * 8 7 6 10 10 N 1.46847 * 109.52173 * 59.18345 * 9 8 7 11 11 C 1.46899 * 111.00035 * 174.15993 * 10 9 8 12 12 H 1.08999 * 109.47316 * 65.81212 * 11 10 9 13 13 C 1.52997 * 109.46913 * 185.81641 * 11 10 9 14 14 C 1.52995 * 109.46625 * 305.81288 * 11 10 9 15 15 C 1.53005 * 109.46908 * 177.33540 * 14 11 10 16 16 C 1.50701 * 109.47289 * 185.11908 * 15 14 11 17 17 H 1.07998 * 119.99898 * 0.02562 * 16 15 14 18 18 C 1.37876 * 119.99753 * 179.97438 * 16 15 14 19 19 N 1.31515 * 120.00220 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99829 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47312 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.47302 * 120.00248 * 20 18 16 23 23 H 1.48503 * 109.47058 * 240.00090 * 20 18 16 24 24 C 1.46847 * 111.19660 * 298.25685 * 10 9 8 25 25 C 1.53042 * 109.52383 * 61.74054 * 24 10 9 26 26 C 1.38734 * 119.88683 * 359.52129 * 5 4 3 27 27 C 1.38136 * 119.94442 * 0.45495 * 26 5 4 28 28 H 1.08997 * 109.47354 * 90.00505 * 1 2 3 29 29 H 1.09004 * 109.47326 * 210.00384 * 1 2 3 30 30 H 1.08996 * 109.47684 * 330.00346 * 1 2 3 31 31 H 1.07993 * 119.97717 * 359.95107 * 3 2 1 32 32 H 1.08002 * 120.02460 * 179.97438 * 4 3 2 33 33 H 1.08994 * 109.52541 * 34.96202 * 7 6 5 34 34 H 1.08998 * 109.50714 * 302.38616 * 8 7 6 35 35 H 1.09001 * 109.49988 * 62.50080 * 8 7 6 36 36 H 1.08994 * 109.46214 * 299.16473 * 9 8 7 37 37 H 1.08998 * 109.45787 * 179.19549 * 9 8 7 38 38 H 1.09005 * 109.47048 * 179.97438 * 13 11 10 39 39 H 1.09005 * 109.47102 * 299.99487 * 13 11 10 40 40 H 1.08999 * 109.47480 * 59.99671 * 13 11 10 41 41 H 1.08996 * 109.47937 * 297.33234 * 14 11 10 42 42 H 1.09003 * 109.47475 * 57.33968 * 14 11 10 43 43 H 1.09004 * 109.47154 * 305.12356 * 15 14 11 44 44 H 1.09002 * 109.47079 * 65.12072 * 15 14 11 45 45 H 0.96998 * 119.99982 * 179.97438 * 19 18 16 46 46 H 1.08996 * 109.46040 * 301.72883 * 24 10 9 47 47 H 1.08994 * 109.45432 * 181.75334 * 24 10 9 48 48 H 1.08999 * 109.49917 * 180.87772 * 25 24 10 49 49 H 1.09003 * 109.50227 * 60.76796 * 25 24 10 50 50 H 1.07996 * 120.02584 * 180.20721 * 26 5 4 51 51 H 1.07998 * 119.97659 * 179.77014 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1970 1.1981 0.0000 4 6 3.5785 1.2008 0.0005 5 6 4.2734 0.0000 -0.0042 6 8 5.6324 0.0001 -0.0089 7 6 6.2815 1.2672 0.1142 8 6 6.4020 1.9168 -1.2672 9 6 7.1516 3.2447 -1.1375 10 7 8.4854 3.0021 -0.5729 11 6 9.2847 4.2345 -0.5625 12 1 8.8357 4.9530 0.1233 13 6 10.7093 3.9145 -0.1052 14 6 9.3229 4.8294 -1.9715 15 6 10.0994 6.1476 -1.9476 16 6 10.0304 6.7959 -3.3063 17 1 9.4868 6.3161 -4.1066 18 6 10.6605 8.0022 -3.5272 19 7 11.3221 8.5868 -2.5525 20 14 10.5744 8.8063 -5.2111 21 1 9.7751 7.9532 -6.1268 22 1 9.9321 10.1398 -5.0908 23 1 11.9473 8.9655 -5.7544 24 6 8.3948 2.4222 0.7732 25 6 7.6821 1.0698 0.7005 26 6 3.5785 -1.2007 0.0007 27 6 2.1972 -1.1981 0.0006 28 1 -0.3634 -0.0001 -1.0276 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3634 0.8899 0.5137 31 1 1.6557 2.1326 -0.0008 32 1 4.1171 2.1370 0.0001 33 1 5.6991 1.9126 0.7717 34 1 6.9507 1.2527 -1.9350 35 1 5.4063 2.0989 -1.6716 36 1 6.5953 3.9131 -0.4805 37 1 7.2516 3.7028 -2.1214 38 1 11.3025 4.8290 -0.0979 39 1 10.6820 3.4906 0.8987 40 1 11.1583 3.1960 -0.7909 41 1 9.8146 4.1304 -2.6480 42 1 8.3052 5.0135 -2.3160 43 1 9.6615 6.8139 -1.2044 44 1 11.1405 5.9514 -1.6912 45 1 11.7657 9.4353 -2.7081 46 1 7.8325 3.0945 1.4211 47 1 9.3976 2.2830 1.1767 48 1 7.6012 0.6469 1.7018 49 1 8.2511 0.3923 0.0637 50 1 4.1172 -2.1368 0.0004 51 1 1.6558 -2.1325 0.0006 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172507142.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:35:37 Heat of formation + Delta-G solvation = -31.053918 kcal Electronic energy + Delta-G solvation = -26393.576895 eV Core-core repulsion = 22871.143671 eV Total energy + Delta-G solvation = -3522.433224 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.67167 -39.12570 -37.72579 -34.95919 -32.96293 -32.12828 -31.43087 -31.00990 -30.49287 -28.37909 -26.65848 -25.40343 -24.27500 -23.18502 -22.55796 -21.66979 -21.19878 -19.92931 -19.22663 -18.38835 -16.79342 -16.28075 -15.77854 -15.50691 -15.12886 -14.83566 -14.78061 -14.45266 -14.21494 -14.05375 -13.92629 -13.86256 -13.67517 -13.01527 -12.97124 -12.68445 -12.49276 -12.28708 -12.16893 -11.84320 -11.73138 -11.60262 -11.41576 -11.25507 -11.14161 -11.07980 -10.83979 -10.80087 -10.68604 -10.49201 -10.42755 -9.98299 -9.58086 -9.30839 -9.23334 -8.99908 -8.33800 -8.21932 -8.08268 -5.99877 -4.01578 1.10580 1.19717 3.00373 3.30834 3.38453 3.42746 3.51742 4.02995 4.46424 4.50111 4.58638 4.62090 4.65320 4.71024 4.89179 4.99811 5.10859 5.10998 5.14617 5.29415 5.31850 5.36029 5.40843 5.45673 5.48250 5.52773 5.58711 5.61941 5.66978 5.77042 5.81003 5.87940 5.94037 6.00921 6.05255 6.07327 6.16386 6.21963 6.32119 6.37002 6.39949 6.58373 6.63030 6.72633 6.76359 7.10898 7.29349 7.36078 7.42356 7.68984 7.84252 8.00620 8.44249 9.05785 9.62361 11.11450 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.017896 B = 0.002321 C = 0.002119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.189471 B =12062.062371 C =13211.044176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.131 4.131 3 C -0.079 4.079 4 C -0.206 4.206 5 C 0.131 3.869 6 O -0.309 6.309 7 C 0.086 3.914 8 C -0.139 4.139 9 C 0.053 3.947 10 N -0.535 5.535 11 C 0.082 3.918 12 H 0.035 0.965 13 C -0.142 4.142 14 C -0.105 4.105 15 C 0.022 3.978 16 C -0.517 4.517 17 H 0.055 0.945 18 C 0.055 3.945 19 N -0.896 5.896 20 Si 0.890 3.110 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.284 1.284 24 C 0.055 3.945 25 C -0.109 4.109 26 C -0.153 4.153 27 C -0.082 4.082 28 H 0.066 0.934 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.123 0.877 32 H 0.130 0.870 33 H 0.069 0.931 34 H 0.083 0.917 35 H 0.070 0.930 36 H 0.030 0.970 37 H 0.094 0.906 38 H 0.071 0.929 39 H 0.042 0.958 40 H 0.059 0.941 41 H 0.056 0.944 42 H 0.050 0.950 43 H 0.012 0.988 44 H 0.020 0.980 45 H 0.259 0.741 46 H 0.030 0.970 47 H 0.087 0.913 48 H 0.072 0.928 49 H 0.083 0.917 50 H 0.129 0.871 51 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.115 -18.882 8.978 27.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.132 4.132 3 C -0.098 4.098 4 C -0.225 4.225 5 C 0.086 3.914 6 O -0.223 6.223 7 C 0.030 3.970 8 C -0.177 4.177 9 C -0.075 4.075 10 N -0.260 5.260 11 C -0.025 4.025 12 H 0.053 0.947 13 C -0.199 4.199 14 C -0.143 4.143 15 C -0.015 4.015 16 C -0.556 4.556 17 H 0.073 0.927 18 C -0.145 4.145 19 N -0.535 5.535 20 Si 0.718 3.282 21 H -0.198 1.198 22 H -0.211 1.211 23 H -0.210 1.210 24 C -0.073 4.073 25 C -0.146 4.146 26 C -0.171 4.171 27 C -0.100 4.100 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.141 0.859 32 H 0.148 0.852 33 H 0.087 0.913 34 H 0.102 0.898 35 H 0.088 0.912 36 H 0.048 0.952 37 H 0.112 0.888 38 H 0.089 0.911 39 H 0.061 0.939 40 H 0.078 0.922 41 H 0.074 0.926 42 H 0.068 0.932 43 H 0.031 0.969 44 H 0.039 0.961 45 H 0.069 0.931 46 H 0.049 0.951 47 H 0.105 0.895 48 H 0.090 0.910 49 H 0.102 0.898 50 H 0.147 0.853 51 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -16.628 -19.218 8.705 26.862 hybrid contribution -0.452 1.421 -0.384 1.540 sum -17.080 -17.797 8.321 26.033 Atomic orbital electron populations 1.20707 0.91191 1.02513 1.02109 1.19818 0.96161 0.93087 1.04107 1.20849 0.93326 0.97701 0.97879 1.21361 0.95329 0.97497 1.08280 1.19048 0.82788 0.93997 0.95581 1.86117 1.15852 1.32891 1.87445 1.22592 0.93753 0.83143 0.97487 1.22175 1.00873 0.97818 0.96844 1.22116 0.88717 0.95106 1.01532 1.62040 1.13907 1.29218 1.20835 1.21778 0.93355 0.88194 0.99175 0.94653 1.21890 0.96023 1.02407 0.99617 1.21794 1.00656 0.99053 0.92798 1.19134 0.95279 0.90204 0.96885 1.21293 1.32314 1.05036 0.96941 0.92721 1.25024 0.95440 0.97304 0.96772 1.69971 1.34471 1.17429 1.31665 0.86562 0.77762 0.79287 0.84551 1.19753 1.21084 1.21016 1.22087 1.00687 0.94059 0.90505 1.21634 0.93160 0.98550 1.01299 1.20434 0.93755 0.96350 1.06603 1.20822 0.93000 0.97686 0.98520 0.91482 0.91782 0.91780 0.85907 0.85192 0.91335 0.89832 0.91189 0.95151 0.88790 0.91056 0.93874 0.92155 0.92557 0.93192 0.96949 0.96130 0.93114 0.95138 0.89451 0.90977 0.89838 0.85305 0.85591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.68 10.01 36.00 0.36 -0.32 16 2 C -0.13 -1.16 5.88 -104.60 -0.62 -1.77 16 3 C -0.08 -0.75 9.69 -39.60 -0.38 -1.14 16 4 C -0.21 -2.19 8.28 -39.43 -0.33 -2.52 16 5 C 0.13 1.51 6.60 -39.22 -0.26 1.25 16 6 O -0.31 -3.77 9.80 -19.44 -0.19 -3.96 16 7 C 0.09 0.97 2.17 -26.61 -0.06 0.92 16 8 C -0.14 -1.67 5.38 -26.65 -0.14 -1.81 16 9 C 0.05 0.73 5.10 -3.83 -0.02 0.71 16 10 N -0.53 -7.80 4.52 -226.70 -1.03 -8.82 16 11 C 0.08 1.40 2.18 -67.72 -0.15 1.25 16 12 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 13 C -0.14 -2.28 8.73 37.16 0.32 -1.96 16 14 C -0.11 -2.15 4.33 -26.73 -0.12 -2.26 16 15 C 0.02 0.57 4.54 -27.88 -0.13 0.44 16 16 C -0.52 -14.61 9.11 -34.44 -0.31 -14.93 16 17 H 0.05 1.51 7.74 -52.49 -0.41 1.11 16 18 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 19 N -0.90 -26.85 13.29 55.43 0.74 -26.11 16 20 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 21 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 24 C 0.05 0.67 5.25 -3.83 -0.02 0.65 16 25 C -0.11 -1.19 5.75 -26.65 -0.15 -1.34 16 26 C -0.15 -1.55 9.99 -39.44 -0.39 -1.94 16 27 C -0.08 -0.72 9.69 -39.61 -0.38 -1.10 16 28 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.33 8.08 -51.93 -0.42 -0.09 16 30 H 0.06 0.36 8.08 -51.93 -0.42 -0.06 16 31 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 32 H 0.13 1.31 5.41 -52.49 -0.28 1.03 16 33 H 0.07 0.74 6.31 -51.93 -0.33 0.42 16 34 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.07 0.79 6.91 -51.93 -0.36 0.43 16 36 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.09 1.41 5.81 -51.93 -0.30 1.11 16 38 H 0.07 1.27 6.61 -51.93 -0.34 0.92 16 39 H 0.04 0.59 6.31 -51.93 -0.33 0.26 16 40 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 42 H 0.05 1.01 6.05 -51.93 -0.31 0.69 16 43 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.02 0.55 6.76 -51.93 -0.35 0.20 16 45 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 46 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 16 47 H 0.09 1.02 6.05 -51.93 -0.31 0.70 16 48 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 49 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 50 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 51 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 LS Contribution 390.66 15.07 5.89 5.89 Total: -1.00 -30.35 390.66 -11.29 -41.64 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -8.80 Total: -0.94 kcal Atomic # 6 Polarization: -21.51 SS G_CDS: -2.87 Total: -24.39 kcal Atomic # 7 Polarization: -34.64 SS G_CDS: -0.29 Total: -34.93 kcal Atomic # 8 Polarization: -3.77 SS G_CDS: -0.19 Total: -3.96 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -30.35 -11.29 -41.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172507142.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.585 kcal (2) G-P(sol) polarization free energy of solvation -30.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds