Wall clock time and date at job start Tue Mar 31 2020 11:35:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38267 * 119.94044 * 2 1 4 4 C 1.38147 * 120.05159 * 179.97438 * 3 2 1 5 5 C 1.38734 * 119.94536 * 0.24924 * 4 3 2 6 6 O 1.35905 * 120.05368 * 179.74397 * 5 4 3 7 7 C 1.42900 * 117.00135 * 5.54323 * 6 5 4 8 8 C 1.53122 * 109.52010 * 274.77281 * 7 6 5 9 9 C 1.53041 * 109.27726 * 182.43900 * 8 7 6 10 10 N 1.46847 * 109.52173 * 59.18345 * 9 8 7 11 11 C 1.46899 * 111.00035 * 174.15993 * 10 9 8 12 12 H 1.08999 * 109.47316 * 65.81212 * 11 10 9 13 13 C 1.52997 * 109.46913 * 185.81641 * 11 10 9 14 14 C 1.52995 * 109.46625 * 305.81288 * 11 10 9 15 15 C 1.53005 * 109.46908 * 177.33540 * 14 11 10 16 16 C 1.50701 * 109.47289 * 185.11908 * 15 14 11 17 17 H 1.07998 * 119.99898 * 0.02562 * 16 15 14 18 18 C 1.37876 * 119.99753 * 179.97438 * 16 15 14 19 19 N 1.31515 * 120.00220 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99829 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47312 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.47302 * 120.00248 * 20 18 16 23 23 H 1.48503 * 109.47058 * 240.00090 * 20 18 16 24 24 C 1.46847 * 111.19660 * 298.25685 * 10 9 8 25 25 C 1.53042 * 109.52383 * 61.74054 * 24 10 9 26 26 C 1.38734 * 119.88683 * 359.52129 * 5 4 3 27 27 C 1.38136 * 119.94442 * 0.45495 * 26 5 4 28 28 H 1.08997 * 109.47354 * 90.00505 * 1 2 3 29 29 H 1.09004 * 109.47326 * 210.00384 * 1 2 3 30 30 H 1.08996 * 109.47684 * 330.00346 * 1 2 3 31 31 H 1.07993 * 119.97717 * 359.95107 * 3 2 1 32 32 H 1.08002 * 120.02460 * 179.97438 * 4 3 2 33 33 H 1.08994 * 109.52541 * 34.96202 * 7 6 5 34 34 H 1.08998 * 109.50714 * 302.38616 * 8 7 6 35 35 H 1.09001 * 109.49988 * 62.50080 * 8 7 6 36 36 H 1.08994 * 109.46214 * 299.16473 * 9 8 7 37 37 H 1.08998 * 109.45787 * 179.19549 * 9 8 7 38 38 H 1.09005 * 109.47048 * 179.97438 * 13 11 10 39 39 H 1.09005 * 109.47102 * 299.99487 * 13 11 10 40 40 H 1.08999 * 109.47480 * 59.99671 * 13 11 10 41 41 H 1.08996 * 109.47937 * 297.33234 * 14 11 10 42 42 H 1.09003 * 109.47475 * 57.33968 * 14 11 10 43 43 H 1.09004 * 109.47154 * 305.12356 * 15 14 11 44 44 H 1.09002 * 109.47079 * 65.12072 * 15 14 11 45 45 H 0.96998 * 119.99982 * 179.97438 * 19 18 16 46 46 H 1.08996 * 109.46040 * 301.72883 * 24 10 9 47 47 H 1.08994 * 109.45432 * 181.75334 * 24 10 9 48 48 H 1.08999 * 109.49917 * 180.87772 * 25 24 10 49 49 H 1.09003 * 109.50227 * 60.76796 * 25 24 10 50 50 H 1.07996 * 120.02584 * 180.20721 * 26 5 4 51 51 H 1.07998 * 119.97659 * 179.77014 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1970 1.1981 0.0000 4 6 3.5785 1.2008 0.0005 5 6 4.2734 0.0000 -0.0042 6 8 5.6324 0.0001 -0.0089 7 6 6.2815 1.2672 0.1142 8 6 6.4020 1.9168 -1.2672 9 6 7.1516 3.2447 -1.1375 10 7 8.4854 3.0021 -0.5729 11 6 9.2847 4.2345 -0.5625 12 1 8.8357 4.9530 0.1233 13 6 10.7093 3.9145 -0.1052 14 6 9.3229 4.8294 -1.9715 15 6 10.0994 6.1476 -1.9476 16 6 10.0304 6.7959 -3.3063 17 1 9.4868 6.3161 -4.1066 18 6 10.6605 8.0022 -3.5272 19 7 11.3221 8.5868 -2.5525 20 14 10.5744 8.8063 -5.2111 21 1 9.7751 7.9532 -6.1268 22 1 9.9321 10.1398 -5.0908 23 1 11.9473 8.9655 -5.7544 24 6 8.3948 2.4222 0.7732 25 6 7.6821 1.0698 0.7005 26 6 3.5785 -1.2007 0.0007 27 6 2.1972 -1.1981 0.0006 28 1 -0.3634 -0.0001 -1.0276 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3634 0.8899 0.5137 31 1 1.6557 2.1326 -0.0008 32 1 4.1171 2.1370 0.0001 33 1 5.6991 1.9126 0.7717 34 1 6.9507 1.2527 -1.9350 35 1 5.4063 2.0989 -1.6716 36 1 6.5953 3.9131 -0.4805 37 1 7.2516 3.7028 -2.1214 38 1 11.3025 4.8290 -0.0979 39 1 10.6820 3.4906 0.8987 40 1 11.1583 3.1960 -0.7909 41 1 9.8146 4.1304 -2.6480 42 1 8.3052 5.0135 -2.3160 43 1 9.6615 6.8139 -1.2044 44 1 11.1405 5.9514 -1.6912 45 1 11.7657 9.4353 -2.7081 46 1 7.8325 3.0945 1.4211 47 1 9.3976 2.2830 1.1767 48 1 7.6012 0.6469 1.7018 49 1 8.2511 0.3923 0.0637 50 1 4.1172 -2.1368 0.0004 51 1 1.6558 -2.1325 0.0006 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172507142.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:35:36 Heat of formation + Delta-G solvation = -46.311344 kcal Electronic energy + Delta-G solvation = -26394.238507 eV Core-core repulsion = 22871.143671 eV Total energy + Delta-G solvation = -3523.094836 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.52250 -40.13949 -38.63715 -36.41098 -34.77593 -32.98198 -32.46365 -31.88504 -31.77083 -29.86104 -27.41563 -27.07926 -25.34692 -24.36960 -23.44190 -23.12170 -22.08871 -20.94461 -20.70169 -19.20993 -18.59556 -17.54907 -16.77665 -16.50654 -16.27224 -16.06773 -15.91184 -15.83790 -15.40126 -15.06482 -14.84804 -14.56887 -14.44711 -14.33456 -14.11031 -13.89122 -13.82048 -13.66344 -13.20613 -12.98930 -12.89485 -12.74242 -12.56837 -12.48415 -12.44664 -12.26394 -12.24986 -12.19982 -11.96892 -11.61033 -11.56820 -11.43769 -11.28849 -11.16851 -10.85579 -10.53139 -9.95362 -9.27589 -8.97074 -8.20066 -6.30201 0.38672 0.46304 1.38682 1.39178 1.52324 2.16970 2.40189 2.79416 2.86365 3.13010 3.62305 3.67084 3.88847 3.89808 3.98413 4.01833 4.07115 4.10766 4.22987 4.29143 4.34801 4.39681 4.45531 4.47503 4.51377 4.60263 4.73890 4.77605 4.82477 4.84498 4.88160 4.88921 4.90619 4.97877 5.02403 5.08917 5.10755 5.14387 5.17655 5.24592 5.26124 5.39666 5.41788 5.43341 5.52664 5.69750 5.78408 5.86759 5.89888 6.11202 6.19297 6.29748 6.47997 6.86908 7.38535 8.91680 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.017896 B = 0.002321 C = 0.002119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.189471 B =12062.062371 C =13211.044176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.134 4.134 3 C -0.090 4.090 4 C -0.216 4.216 5 C 0.107 3.893 6 O -0.320 6.320 7 C 0.090 3.910 8 C -0.129 4.129 9 C 0.054 3.946 10 N -0.539 5.539 11 C 0.091 3.909 12 H 0.027 0.973 13 C -0.136 4.136 14 C -0.092 4.092 15 C 0.029 3.971 16 C -0.540 4.540 17 H 0.056 0.944 18 C -0.001 4.001 19 N -0.931 5.931 20 Si 0.962 3.038 21 H -0.264 1.264 22 H -0.278 1.278 23 H -0.278 1.278 24 C 0.055 3.945 25 C -0.102 4.102 26 C -0.163 4.163 27 C -0.084 4.084 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.138 0.862 32 H 0.130 0.870 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.033 0.967 37 H 0.077 0.923 38 H 0.047 0.953 39 H 0.072 0.928 40 H 0.059 0.941 41 H 0.051 0.949 42 H 0.050 0.950 43 H -0.013 1.013 44 H 0.001 0.999 45 H 0.263 0.737 46 H 0.036 0.964 47 H 0.096 0.904 48 H 0.090 0.910 49 H 0.077 0.923 50 H 0.136 0.864 51 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.817 -20.106 8.976 28.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.135 4.135 3 C -0.108 4.108 4 C -0.235 4.235 5 C 0.062 3.938 6 O -0.234 6.234 7 C 0.034 3.966 8 C -0.167 4.167 9 C -0.074 4.074 10 N -0.264 5.264 11 C -0.017 4.017 12 H 0.045 0.955 13 C -0.194 4.194 14 C -0.129 4.129 15 C -0.008 4.008 16 C -0.578 4.578 17 H 0.074 0.926 18 C -0.198 4.198 19 N -0.572 5.572 20 Si 0.787 3.213 21 H -0.188 1.188 22 H -0.204 1.204 23 H -0.203 1.203 24 C -0.073 4.073 25 C -0.140 4.140 26 C -0.182 4.182 27 C -0.102 4.102 28 H 0.092 0.908 29 H 0.095 0.905 30 H 0.089 0.911 31 H 0.155 0.845 32 H 0.147 0.853 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.094 0.906 36 H 0.052 0.948 37 H 0.096 0.904 38 H 0.066 0.934 39 H 0.090 0.910 40 H 0.078 0.922 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.005 0.995 44 H 0.019 0.981 45 H 0.072 0.928 46 H 0.054 0.946 47 H 0.114 0.886 48 H 0.109 0.891 49 H 0.096 0.904 50 H 0.154 0.846 51 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -18.343 -20.461 8.706 28.826 hybrid contribution 0.007 1.768 -0.355 1.804 sum -18.337 -18.693 8.351 27.485 Atomic orbital electron populations 1.20759 0.89279 1.03544 1.02840 1.20197 0.97657 0.92818 1.02792 1.21123 0.93078 0.98848 0.97789 1.21454 0.95993 0.97292 1.08765 1.19295 0.82551 0.94844 0.97133 1.86089 1.16501 1.32960 1.87892 1.22530 0.94070 0.83191 0.96846 1.22052 1.00610 0.96581 0.97433 1.22089 0.88585 0.96115 1.00619 1.62001 1.14157 1.27535 1.22697 1.21521 0.94533 0.89122 0.96484 0.95502 1.21814 0.94854 1.01358 1.01353 1.21559 0.99613 0.96532 0.95234 1.18998 0.94636 0.92082 0.95098 1.21719 1.32403 1.05662 0.98061 0.92586 1.25950 0.94936 0.97982 1.00977 1.70094 1.35217 1.17951 1.33929 0.85441 0.78063 0.78281 0.79521 1.18786 1.20359 1.20328 1.22170 1.01568 0.94549 0.88996 1.21578 0.92590 0.97585 1.02212 1.20685 0.94552 0.96322 1.06614 1.21157 0.92604 0.98873 0.97580 0.90789 0.90482 0.91106 0.84466 0.85251 0.90806 0.90874 0.90642 0.94841 0.90445 0.93413 0.90950 0.92192 0.93059 0.93112 0.99458 0.98076 0.92821 0.94593 0.88568 0.89148 0.90434 0.84573 0.83129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.07 10.01 71.23 0.71 -0.36 16 2 C -0.13 -2.10 5.88 -19.85 -0.12 -2.22 16 3 C -0.09 -1.59 9.69 22.25 0.22 -1.38 16 4 C -0.22 -4.44 8.28 22.37 0.19 -4.25 16 5 C 0.11 2.37 6.60 22.51 0.15 2.52 16 6 O -0.32 -7.56 9.80 -92.48 -0.91 -8.47 16 7 C 0.09 1.94 2.17 30.67 0.07 2.00 16 8 C -0.13 -3.03 5.38 30.65 0.16 -2.87 16 9 C 0.05 1.46 5.10 86.33 0.44 1.90 16 10 N -0.54 -15.37 4.52 -871.14 -3.94 -19.31 16 11 C 0.09 3.12 2.18 44.91 0.10 3.22 16 12 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 13 C -0.14 -4.36 8.73 71.98 0.63 -3.73 16 14 C -0.09 -3.83 4.33 30.59 0.13 -3.70 16 15 C 0.03 1.55 4.54 29.85 0.14 1.69 16 16 C -0.54 -31.12 9.11 25.60 0.23 -30.89 16 17 H 0.06 3.13 7.74 -2.91 -0.02 3.11 16 18 C 0.00 -0.05 5.46 84.65 0.46 0.42 16 19 N -0.93 -56.88 13.29 21.45 0.28 -56.60 16 20 Si 0.96 44.75 29.54 68.60 2.03 46.77 16 21 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 22 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 23 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 24 C 0.05 1.24 5.25 86.33 0.45 1.70 16 25 C -0.10 -2.07 5.75 30.65 0.18 -1.89 16 26 C -0.16 -3.12 9.99 22.36 0.22 -2.90 16 27 C -0.08 -1.32 9.69 22.25 0.22 -1.10 16 28 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.08 0.58 8.08 -2.38 -0.02 0.56 16 30 H 0.07 0.62 8.08 -2.39 -0.02 0.60 16 31 H 0.14 1.90 8.06 -2.91 -0.02 1.88 16 32 H 0.13 2.55 5.41 -2.91 -0.02 2.53 16 33 H 0.07 1.52 6.31 -2.39 -0.02 1.51 16 34 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.08 1.68 6.91 -2.39 -0.02 1.67 16 36 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.08 2.35 5.81 -2.39 -0.01 2.34 16 38 H 0.05 1.74 6.61 -2.38 -0.02 1.72 16 39 H 0.07 1.87 6.31 -2.38 -0.02 1.85 16 40 H 0.06 1.90 8.14 -2.39 -0.02 1.89 16 41 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 42 H 0.05 2.09 6.05 -2.39 -0.01 2.08 16 43 H -0.01 -0.74 8.14 -2.38 -0.02 -0.76 16 44 H 0.00 0.05 6.76 -2.39 -0.02 0.04 16 45 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 46 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 47 H 0.10 2.03 6.05 -2.39 -0.01 2.01 16 48 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 49 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 50 H 0.14 2.28 8.06 -2.91 -0.02 2.25 16 51 H 0.15 1.51 8.06 -2.91 -0.02 1.48 16 Total: -1.00 -65.70 390.66 2.92 -62.77 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: 0.89 Total: 16.68 kcal Atomic # 6 Polarization: -46.42 SS G_CDS: 4.57 Total: -41.85 kcal Atomic # 7 Polarization: -72.25 SS G_CDS: -3.66 Total: -75.91 kcal Atomic # 8 Polarization: -7.56 SS G_CDS: -0.91 Total: -8.47 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.77 kcal Total: -65.70 2.92 -62.77 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172507142.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.463 kcal (2) G-P(sol) polarization free energy of solvation -65.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds