Wall clock time and date at job start Tue Mar 31 2020 11:35:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38267 * 119.94407 * 2 1 4 4 C 1.38145 * 120.05458 * 180.25846 * 3 2 1 5 5 C 1.38729 * 119.94302 * 359.46660 * 4 3 2 6 6 O 1.35897 * 120.05427 * 180.29762 * 5 4 3 7 7 C 1.42894 * 117.00170 * 5.46120 * 6 5 4 8 8 C 1.53120 * 109.52676 * 274.84531 * 7 6 5 9 9 C 1.53036 * 109.28182 * 182.44040 * 8 7 6 10 10 N 1.46843 * 109.52301 * 59.17816 * 9 8 7 11 11 C 1.46902 * 110.99870 * 174.16279 * 10 9 8 12 12 H 1.09008 * 109.47074 * 179.20891 * 11 10 9 13 13 C 1.52995 * 109.47252 * 59.21084 * 11 10 9 14 14 C 1.53001 * 109.47006 * 299.20839 * 11 10 9 15 15 C 1.52999 * 109.47134 * 294.99901 * 14 11 10 16 16 C 1.50699 * 109.47424 * 179.97438 * 15 14 11 17 17 H 1.08000 * 119.99589 * 0.02562 * 16 15 14 18 18 C 1.37877 * 120.00533 * 180.02562 * 16 15 14 19 19 N 1.31513 * 120.00141 * 179.97438 * 18 16 15 20 20 Si 1.86796 * 119.99718 * 0.02562 * 18 16 15 21 21 H 1.48503 * 109.47516 * 89.99600 * 20 18 16 22 22 H 1.48495 * 109.47210 * 209.99809 * 20 18 16 23 23 H 1.48506 * 109.47372 * 329.99937 * 20 18 16 24 24 C 1.46851 * 111.20120 * 298.25829 * 10 9 8 25 25 C 1.53042 * 109.51976 * 61.74026 * 24 10 9 26 26 C 1.38735 * 119.88703 * 0.28171 * 5 4 3 27 27 C 1.38135 * 119.94540 * 359.97438 * 26 5 4 28 28 H 1.09002 * 109.47001 * 270.25308 * 1 2 3 29 29 H 1.09004 * 109.47526 * 30.25188 * 1 2 3 30 30 H 1.09004 * 109.47501 * 150.25291 * 1 2 3 31 31 H 1.08000 * 119.97396 * 0.02669 * 3 2 1 32 32 H 1.08001 * 120.02377 * 179.75016 * 4 3 2 33 33 H 1.08999 * 109.52632 * 35.03581 * 7 6 5 34 34 H 1.08998 * 109.49882 * 302.37849 * 8 7 6 35 35 H 1.08998 * 109.50116 * 62.49315 * 8 7 6 36 36 H 1.08998 * 109.46060 * 299.16134 * 9 8 7 37 37 H 1.08997 * 109.46171 * 179.19681 * 9 8 7 38 38 H 1.09001 * 109.47045 * 299.99542 * 13 11 10 39 39 H 1.09000 * 109.47543 * 59.99790 * 13 11 10 40 40 H 1.08998 * 109.47237 * 179.97438 * 13 11 10 41 41 H 1.08993 * 109.47072 * 55.00182 * 14 11 10 42 42 H 1.09000 * 109.47137 * 175.00446 * 14 11 10 43 43 H 1.08998 * 109.47793 * 300.00306 * 15 14 11 44 44 H 1.09005 * 109.47074 * 60.00070 * 15 14 11 45 45 H 0.96998 * 119.99794 * 179.97438 * 19 18 16 46 46 H 1.09003 * 109.45740 * 301.72902 * 24 10 9 47 47 H 1.08993 * 109.46746 * 181.76076 * 24 10 9 48 48 H 1.09003 * 109.49795 * 180.88198 * 25 24 10 49 49 H 1.08994 * 109.50259 * 60.77021 * 25 24 10 50 50 H 1.08006 * 120.02529 * 180.02562 * 26 5 4 51 51 H 1.08001 * 119.97432 * 179.97438 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1981 0.0000 4 6 3.5786 1.2008 -0.0054 5 6 4.2734 0.0000 0.0004 6 8 5.6324 0.0001 0.0012 7 6 6.2810 1.2680 0.1171 8 6 6.4056 1.9077 -1.2685 9 6 7.1548 3.2365 -1.1460 10 7 8.4868 2.9981 -0.5757 11 6 9.2860 4.2307 -0.5717 12 1 10.2626 4.0291 -0.1313 13 6 8.5672 5.3020 0.2507 14 6 9.4666 4.7261 -2.0080 15 6 10.2939 3.7099 -2.7977 16 6 10.4713 4.1975 -4.2126 17 1 10.0377 5.1383 -4.5178 18 6 11.1871 3.4425 -5.1174 19 7 11.3415 3.8678 -6.3522 20 14 11.9365 1.8149 -4.5896 21 1 10.9606 0.7208 -4.8259 22 1 13.1683 1.5582 -5.3782 23 1 12.2763 1.8715 -3.1451 24 6 8.3922 2.4279 0.7742 25 6 7.6799 1.0749 0.7091 26 6 3.5785 -1.2007 0.0056 27 6 2.1972 -1.1980 0.0057 28 1 -0.3633 0.0045 1.0277 29 1 -0.3634 0.8877 -0.5177 30 1 -0.3634 -0.8923 -0.5099 31 1 1.6558 2.1326 0.0004 32 1 4.1172 2.1369 -0.0095 33 1 5.6966 1.9181 0.7682 34 1 6.9565 1.2389 -1.9298 35 1 5.4112 2.0868 -1.6773 36 1 6.5964 3.9097 -0.4956 37 1 7.2577 3.6876 -2.1329 38 1 7.5907 5.5036 -0.1896 39 1 8.4385 4.9491 1.2740 40 1 9.1604 6.2164 0.2541 41 1 8.4900 4.8429 -2.4775 42 1 9.9827 5.6861 -1.9990 43 1 11.2706 3.5929 -2.3282 44 1 9.7779 2.7497 -2.8067 45 1 11.8454 3.3369 -6.9886 46 1 7.8280 3.1049 1.4157 47 1 9.3938 2.2918 1.1821 48 1 7.5959 0.6592 1.7132 49 1 8.2508 0.3931 0.0790 50 1 4.1172 -2.1369 0.0106 51 1 1.6557 -2.1325 0.0093 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172507143.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:35:39 Heat of formation + Delta-G solvation = -43.769115 kcal Electronic energy + Delta-G solvation = -26975.587469 eV Core-core repulsion = 23452.602872 eV Total energy + Delta-G solvation = -3522.984597 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.54460 -40.23845 -38.66152 -36.17750 -34.76232 -32.97376 -32.45953 -31.91806 -31.73574 -30.17812 -27.34887 -27.12368 -25.37031 -24.25293 -23.65532 -22.79087 -22.09813 -21.28050 -20.22660 -19.19598 -18.81185 -17.54951 -16.79248 -16.46481 -16.31832 -16.21869 -15.84857 -15.49417 -15.31292 -14.98901 -14.94252 -14.64608 -14.47223 -14.34034 -14.22224 -14.01627 -13.75026 -13.48710 -13.30796 -13.08326 -13.01445 -12.85046 -12.78297 -12.53531 -12.36233 -12.27844 -12.10417 -11.85854 -11.77386 -11.63795 -11.49490 -11.46530 -11.35388 -11.17363 -10.93516 -10.72605 -9.95543 -9.06542 -8.96925 -8.27304 -6.28917 0.38572 0.46299 1.36412 1.37037 1.50564 2.19296 2.38093 2.79207 2.96935 3.09512 3.64414 3.70047 3.88678 3.90580 3.98607 3.99134 4.08174 4.17875 4.24840 4.30451 4.36275 4.37617 4.45507 4.46192 4.53503 4.61521 4.70955 4.74028 4.79902 4.84166 4.85875 4.88898 4.92674 4.98217 5.01180 5.09851 5.12937 5.14194 5.17531 5.24338 5.26421 5.38458 5.41031 5.43576 5.60409 5.69292 5.70100 5.74949 5.90407 6.24427 6.31151 6.34032 6.49476 6.79938 7.35604 8.89777 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.014909 B = 0.002914 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1877.623787 B = 9604.910475 C =10227.675185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.135 4.135 3 C -0.089 4.089 4 C -0.215 4.215 5 C 0.106 3.894 6 O -0.325 6.325 7 C 0.093 3.907 8 C -0.135 4.135 9 C 0.060 3.940 10 N -0.547 5.547 11 C 0.087 3.913 12 H 0.081 0.919 13 C -0.176 4.176 14 C -0.091 4.091 15 C 0.003 3.997 16 C -0.527 4.527 17 H 0.029 0.971 18 C 0.003 3.997 19 N -0.955 5.955 20 Si 0.950 3.050 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.247 1.247 24 C 0.061 3.939 25 C -0.107 4.107 26 C -0.167 4.167 27 C -0.085 4.085 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.141 0.859 32 H 0.134 0.866 33 H 0.083 0.917 34 H 0.057 0.943 35 H 0.074 0.926 36 H 0.052 0.948 37 H 0.067 0.933 38 H 0.056 0.944 39 H 0.070 0.930 40 H 0.065 0.935 41 H 0.048 0.952 42 H 0.051 0.949 43 H 0.009 0.991 44 H 0.021 0.979 45 H 0.264 0.736 46 H 0.053 0.947 47 H 0.089 0.911 48 H 0.092 0.908 49 H 0.064 0.936 50 H 0.132 0.868 51 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.806 -7.412 21.305 30.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.135 4.135 3 C -0.107 4.107 4 C -0.233 4.233 5 C 0.061 3.939 6 O -0.240 6.240 7 C 0.038 3.962 8 C -0.174 4.174 9 C -0.068 4.068 10 N -0.272 5.272 11 C -0.021 4.021 12 H 0.099 0.901 13 C -0.235 4.235 14 C -0.129 4.129 15 C -0.035 4.035 16 C -0.565 4.565 17 H 0.047 0.953 18 C -0.193 4.193 19 N -0.597 5.597 20 Si 0.774 3.226 21 H -0.198 1.198 22 H -0.211 1.211 23 H -0.171 1.171 24 C -0.066 4.066 25 C -0.145 4.145 26 C -0.186 4.186 27 C -0.103 4.103 28 H 0.095 0.905 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.159 0.841 32 H 0.151 0.849 33 H 0.101 0.899 34 H 0.076 0.924 35 H 0.092 0.908 36 H 0.070 0.930 37 H 0.085 0.915 38 H 0.075 0.925 39 H 0.089 0.911 40 H 0.084 0.916 41 H 0.067 0.933 42 H 0.070 0.930 43 H 0.028 0.972 44 H 0.040 0.960 45 H 0.073 0.927 46 H 0.071 0.929 47 H 0.107 0.893 48 H 0.110 0.890 49 H 0.083 0.917 50 H 0.150 0.850 51 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -19.348 -7.949 20.844 29.529 hybrid contribution 0.336 0.318 -0.366 0.590 sum -19.011 -7.631 20.477 28.965 Atomic orbital electron populations 1.20758 0.89189 1.03481 1.02934 1.20205 0.97704 0.92803 1.02803 1.21141 0.93019 0.98866 0.97632 1.21462 0.95990 0.97225 1.08629 1.19315 0.82518 0.94976 0.97090 1.86098 1.16659 1.33258 1.87954 1.22524 0.94050 0.83114 0.96552 1.22091 1.00537 0.97304 0.97426 1.21993 0.88801 0.95671 1.00331 1.62017 1.14698 1.28302 1.22158 1.21693 0.96972 0.88103 0.95305 0.90088 1.22382 1.01156 0.99641 1.00304 1.21468 0.99356 0.98041 0.94018 1.19351 0.95266 0.96208 0.92662 1.21632 1.32455 1.05984 0.96397 0.95255 1.25977 0.96666 1.02006 0.94681 1.70077 1.43455 1.40735 1.05390 0.85651 0.77898 0.79397 0.79612 1.19827 1.21130 1.17066 1.22074 1.01245 0.94221 0.89068 1.21623 0.92740 0.98231 1.01899 1.20685 0.94668 0.96342 1.06877 1.21143 0.92505 0.98974 0.97677 0.90491 0.91058 0.90752 0.84095 0.84856 0.89903 0.92449 0.90760 0.92970 0.91456 0.92529 0.91083 0.91645 0.93300 0.92989 0.97225 0.96040 0.92716 0.92908 0.89305 0.88995 0.91674 0.84969 0.83280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.11 10.01 71.24 0.71 -0.40 16 2 C -0.13 -2.21 5.88 -19.85 -0.12 -2.33 16 3 C -0.09 -1.58 9.69 22.25 0.22 -1.36 16 4 C -0.21 -4.49 8.28 22.37 0.19 -4.31 16 5 C 0.11 2.53 6.60 22.51 0.15 2.68 16 6 O -0.33 -8.48 9.80 -92.39 -0.91 -9.39 16 7 C 0.09 2.14 2.17 30.67 0.07 2.20 16 8 C -0.14 -3.59 5.38 30.65 0.16 -3.42 16 9 C 0.06 1.63 4.64 86.33 0.40 2.03 16 10 N -0.55 -15.50 4.10 -871.11 -3.57 -19.06 16 11 C 0.09 2.54 2.35 44.91 0.11 2.65 16 12 H 0.08 2.35 8.08 -2.38 -0.02 2.33 16 13 C -0.18 -3.93 8.50 71.98 0.61 -3.32 16 14 C -0.09 -3.52 4.44 30.59 0.14 -3.38 16 15 C 0.00 0.12 3.93 29.85 0.12 0.24 16 16 C -0.53 -31.39 9.66 25.60 0.25 -31.14 16 17 H 0.03 1.91 7.99 -2.91 -0.02 1.88 16 18 C 0.00 0.16 5.47 84.65 0.46 0.63 16 19 N -0.96 -61.95 13.96 21.45 0.30 -61.65 16 20 Si 0.95 46.93 27.47 68.60 1.88 48.81 16 21 H -0.27 -13.19 7.11 99.48 0.71 -12.48 16 22 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 23 H -0.25 -11.42 6.54 99.48 0.65 -10.77 16 24 C 0.06 1.32 5.03 86.33 0.43 1.75 16 25 C -0.11 -2.33 5.75 30.65 0.18 -2.15 16 26 C -0.17 -3.55 9.99 22.36 0.22 -3.33 16 27 C -0.09 -1.46 9.69 22.25 0.22 -1.24 16 28 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.07 0.65 8.09 -2.38 -0.02 0.63 16 30 H 0.07 0.64 8.08 -2.38 -0.02 0.62 16 31 H 0.14 1.87 8.06 -2.91 -0.02 1.85 16 32 H 0.13 2.56 5.41 -2.91 -0.02 2.55 16 33 H 0.08 1.64 6.32 -2.39 -0.02 1.62 16 34 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.07 1.85 6.91 -2.39 -0.02 1.84 16 36 H 0.05 1.19 6.62 -2.39 -0.02 1.17 16 37 H 0.07 2.19 5.93 -2.39 -0.01 2.18 16 38 H 0.06 1.26 6.52 -2.39 -0.02 1.24 16 39 H 0.07 1.30 6.65 -2.39 -0.02 1.28 16 40 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.05 1.93 6.05 -2.39 -0.01 1.92 16 42 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 43 H 0.01 0.46 7.20 -2.39 -0.02 0.44 16 44 H 0.02 1.05 7.18 -2.38 -0.02 1.03 16 45 H 0.26 16.00 8.31 -92.71 -0.77 15.23 16 46 H 0.05 0.94 6.73 -2.39 -0.02 0.93 16 47 H 0.09 1.79 8.08 -2.39 -0.02 1.77 16 48 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 49 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 50 H 0.13 2.57 8.06 -2.91 -0.02 2.55 16 51 H 0.15 1.74 8.06 -2.91 -0.02 1.72 16 Total: -1.00 -70.91 386.72 3.05 -67.86 By element: Atomic # 1 Polarization: 16.81 SS G_CDS: 0.83 Total: 17.64 kcal Atomic # 6 Polarization: -48.72 SS G_CDS: 4.51 Total: -44.22 kcal Atomic # 7 Polarization: -77.45 SS G_CDS: -3.27 Total: -80.72 kcal Atomic # 8 Polarization: -8.48 SS G_CDS: -0.91 Total: -9.39 kcal Atomic # 14 Polarization: 46.93 SS G_CDS: 1.88 Total: 48.81 kcal Total: -70.91 3.05 -67.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172507143.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.092 kcal (2) G-P(sol) polarization free energy of solvation -70.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds