Wall clock time and date at job start Tue Mar 31 2020 11:43:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.38166 * 120.02130 * 2 1 4 4 C 1.38244 * 120.05084 * 179.97438 * 3 2 1 5 5 C 1.38290 * 120.11232 * 0.02562 * 4 3 2 6 6 C 1.38123 * 120.05660 * 359.68166 * 5 4 3 7 7 C 1.38704 * 120.02932 * 179.97438 * 2 1 3 8 8 O 1.35900 * 120.05829 * 0.02566 * 7 2 1 9 9 C 1.42896 * 117.00318 * 185.69077 * 8 7 2 10 10 H 1.09004 * 109.49979 * 35.13468 * 9 8 7 11 11 C 1.53120 * 109.50652 * 275.05705 * 9 8 7 12 12 C 1.53117 * 109.15985 * 182.40365 * 11 9 8 13 13 C 1.53042 * 109.28106 * 57.65571 * 12 11 9 14 14 N 1.46850 * 109.52030 * 300.81831 * 13 12 11 15 15 C 1.46900 * 110.99805 * 185.83878 * 14 13 12 16 16 H 1.08997 * 109.46830 * 186.04855 * 15 14 13 17 17 C 1.52998 * 109.47046 * 306.04817 * 15 14 13 18 18 C 1.52995 * 109.46849 * 66.04519 * 15 14 13 19 19 C 1.53005 * 109.47056 * 65.00427 * 18 15 14 20 20 C 1.50707 * 109.47068 * 179.97438 * 19 18 15 21 21 H 1.07994 * 119.99837 * 359.97438 * 20 19 18 22 22 C 1.37874 * 119.99691 * 179.97438 * 20 19 18 23 23 N 1.31513 * 120.00495 * 0.02562 * 22 20 19 24 24 Si 1.86806 * 119.99606 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47213 * 90.00326 * 24 22 20 26 26 H 1.48503 * 109.47006 * 210.00468 * 24 22 20 27 27 H 1.48495 * 109.47073 * 330.00056 * 24 22 20 28 28 C 1.46846 * 111.19886 * 61.74130 * 14 13 12 29 29 H 1.09009 * 109.46728 * 270.02124 * 1 2 3 30 30 H 1.08994 * 109.47213 * 30.02033 * 1 2 3 31 31 H 1.08998 * 109.47009 * 150.02550 * 1 2 3 32 32 H 1.08001 * 119.97715 * 359.97438 * 3 2 1 33 33 H 1.07997 * 119.94727 * 179.97438 * 4 3 2 34 34 H 1.07997 * 119.97142 * 179.97438 * 5 4 3 35 35 H 1.07999 * 120.02957 * 180.31616 * 6 5 4 36 36 H 1.09000 * 109.52136 * 62.49952 * 11 9 8 37 37 H 1.08994 * 109.52288 * 302.30825 * 11 9 8 38 38 H 1.08998 * 109.50300 * 297.70912 * 12 11 9 39 39 H 1.08998 * 109.50121 * 177.59644 * 12 11 9 40 40 H 1.08995 * 109.46078 * 180.80314 * 13 12 11 41 41 H 1.08993 * 109.46038 * 60.83015 * 13 12 11 42 42 H 1.09005 * 109.47214 * 180.02562 * 17 15 14 43 43 H 1.09001 * 109.47154 * 299.99878 * 17 15 14 44 44 H 1.08993 * 109.47358 * 59.99825 * 17 15 14 45 45 H 1.08996 * 109.47464 * 305.00119 * 18 15 14 46 46 H 1.09008 * 109.47191 * 184.99613 * 18 15 14 47 47 H 1.09003 * 109.46547 * 299.99165 * 19 18 15 48 48 H 1.08996 * 109.47236 * 59.99553 * 19 18 15 49 49 H 0.96992 * 120.00341 * 180.02562 * 23 22 20 50 50 H 1.09000 * 109.46082 * 58.27225 * 28 14 13 51 51 H 1.09000 * 109.46531 * 178.24111 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1963 0.0000 4 6 3.5808 1.1970 0.0005 5 6 4.2752 0.0011 0.0005 6 6 3.5888 -1.1975 0.0066 7 6 2.2012 -1.2009 0.0005 8 8 1.5235 -2.3788 0.0005 9 6 2.2981 -3.5729 0.1274 10 1 3.1467 -3.3880 0.7860 11 6 2.8057 -4.0020 -1.2521 12 6 3.5835 -5.3138 -1.1156 13 6 2.6759 -6.3770 -0.4926 14 7 2.2175 -5.9196 0.8254 15 6 1.4568 -6.9719 1.5124 16 1 1.0385 -6.5733 2.4367 17 6 0.3227 -7.4556 0.6064 18 6 2.3856 -8.1436 1.8365 19 6 3.4471 -7.6903 2.8409 20 6 4.3617 -8.8446 3.1606 21 1 4.2016 -9.8055 2.6944 22 6 5.4028 -8.6739 4.0482 23 7 5.5976 -7.5038 4.6162 24 14 6.5369 -10.1046 4.4439 25 1 7.6769 -10.1104 3.4924 26 1 7.0498 -9.9608 5.8301 27 1 5.7854 -11.3797 4.3240 28 6 1.4278 -4.6866 0.7144 29 1 -0.3633 0.0004 1.0278 30 1 -0.3633 0.8897 -0.5141 31 1 -0.3633 -0.8902 -0.5134 32 1 1.6583 2.1316 -0.0004 33 1 4.1195 2.1331 0.0001 34 1 5.3552 0.0043 0.0005 35 1 4.1315 -2.1311 0.0118 36 1 3.4612 -3.2301 -1.6553 37 1 1.9588 -4.1487 -1.9224 38 1 4.4523 -5.1570 -0.4763 39 1 3.9111 -5.6468 -2.1005 40 1 3.2312 -7.3083 -0.3810 41 1 1.8144 -6.5432 -1.1392 42 1 -0.2420 -8.2361 1.1164 43 1 -0.3390 -6.6208 0.3755 44 1 0.7409 -7.8542 -0.3178 45 1 2.8721 -8.4851 0.9229 46 1 1.8046 -8.9600 2.2658 47 1 4.0282 -6.8740 2.4116 48 1 2.9606 -7.3488 3.7545 49 1 6.3302 -7.3836 5.2404 50 1 0.5721 -4.8608 0.0621 51 1 1.0764 -4.3901 1.7027 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172507414.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:27 Heat of formation + Delta-G solvation = -28.710037 kcal Electronic energy + Delta-G solvation = -27241.804163 eV Core-core repulsion = 23719.472577 eV Total energy + Delta-G solvation = -3522.331586 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.60647 -39.12142 -37.39368 -34.78815 -33.02979 -32.73778 -31.02415 -30.33845 -29.46734 -28.82207 -26.83590 -25.29573 -24.19863 -23.58688 -22.06371 -21.53718 -21.23662 -19.95178 -18.95563 -17.92359 -16.46938 -16.07391 -15.90002 -15.56984 -15.22351 -14.88735 -14.55131 -14.36173 -14.35287 -13.94115 -13.64444 -13.31613 -13.19608 -13.13459 -12.76640 -12.45529 -12.40398 -12.33809 -12.19524 -11.89342 -11.65176 -11.48377 -11.43162 -11.42211 -11.19107 -10.88746 -10.77863 -10.59018 -10.52598 -10.44682 -10.19157 -10.08361 -9.60713 -9.21413 -8.91486 -8.89867 -8.25148 -8.15007 -7.84570 -5.89815 -3.91348 1.23309 1.37376 3.04108 3.35789 3.42182 3.45149 3.67834 4.30332 4.52611 4.65987 4.72213 4.76371 4.80565 4.97242 5.03569 5.15766 5.17085 5.24171 5.36893 5.38741 5.45608 5.50045 5.51290 5.55246 5.60165 5.60435 5.61656 5.74508 5.76863 5.78034 5.86919 5.97007 5.98496 6.10068 6.11136 6.26025 6.26936 6.29671 6.33597 6.37072 6.44213 6.45654 6.63780 6.73908 6.84871 7.25608 7.37913 7.49329 7.51212 7.83454 8.05022 8.20073 8.55245 9.17563 9.71479 11.21039 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.014387 B = 0.003065 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1945.725686 B = 9134.690259 C =10177.723267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.123 4.123 3 C -0.087 4.087 4 C -0.160 4.160 5 C -0.085 4.085 6 C -0.203 4.203 7 C 0.137 3.863 8 O -0.309 6.309 9 C 0.088 3.912 10 H 0.086 0.914 11 C -0.142 4.142 12 C -0.115 4.115 13 C 0.049 3.951 14 N -0.514 5.514 15 C 0.085 3.915 16 H 0.079 0.921 17 C -0.185 4.185 18 C -0.102 4.102 19 C 0.030 3.970 20 C -0.519 4.519 21 H 0.050 0.950 22 C 0.057 3.943 23 N -0.893 5.893 24 Si 0.886 3.114 25 H -0.282 1.282 26 H -0.288 1.288 27 H -0.275 1.275 28 C 0.064 3.936 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.125 0.875 33 H 0.120 0.880 34 H 0.123 0.877 35 H 0.133 0.867 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.077 0.923 39 H 0.069 0.931 40 H 0.088 0.912 41 H 0.031 0.969 42 H 0.059 0.941 43 H 0.046 0.954 44 H 0.056 0.944 45 H 0.049 0.951 46 H 0.050 0.950 47 H 0.031 0.969 48 H 0.009 0.991 49 H 0.258 0.742 50 H 0.039 0.961 51 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.888 14.762 -13.022 21.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.124 4.124 3 C -0.105 4.105 4 C -0.178 4.178 5 C -0.103 4.103 6 C -0.222 4.222 7 C 0.091 3.909 8 O -0.222 6.222 9 C 0.032 3.968 10 H 0.104 0.896 11 C -0.179 4.179 12 C -0.153 4.153 13 C -0.078 4.078 14 N -0.239 5.239 15 C -0.023 4.023 16 H 0.097 0.903 17 C -0.244 4.244 18 C -0.140 4.140 19 C -0.007 4.007 20 C -0.558 4.558 21 H 0.069 0.931 22 C -0.144 4.144 23 N -0.533 5.533 24 Si 0.714 3.286 25 H -0.208 1.208 26 H -0.213 1.213 27 H -0.200 1.200 28 C -0.064 4.064 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.143 0.857 33 H 0.138 0.862 34 H 0.141 0.859 35 H 0.151 0.849 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.096 0.904 39 H 0.088 0.912 40 H 0.107 0.893 41 H 0.050 0.950 42 H 0.078 0.922 43 H 0.066 0.934 44 H 0.075 0.925 45 H 0.067 0.933 46 H 0.068 0.932 47 H 0.049 0.951 48 H 0.027 0.973 49 H 0.068 0.932 50 H 0.057 0.943 51 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -8.578 14.910 -12.624 21.337 hybrid contribution 0.312 -0.980 -0.164 1.041 sum -8.265 13.931 -12.788 20.638 Atomic orbital electron populations 1.20589 0.90683 1.02505 1.02242 1.19271 0.96461 0.90439 1.06235 1.20842 0.94138 0.96627 0.98897 1.21010 0.94210 0.98007 1.04596 1.20958 0.99853 0.91877 0.97657 1.21413 0.93247 0.99776 1.07768 1.18825 0.90407 0.85708 0.95916 1.86011 1.36528 1.12342 1.87358 1.22458 0.94671 0.82478 0.97178 0.89622 1.22143 1.00553 0.98483 0.96768 1.21553 0.99063 0.93791 1.00874 1.22194 0.97654 0.98933 0.89064 1.61925 1.39241 1.03315 1.19370 1.21868 0.92186 0.92418 0.95849 0.90316 1.22512 0.99630 1.01172 1.01096 1.21733 0.97364 0.94351 1.00517 1.18998 0.92398 0.96532 0.92789 1.21329 1.12479 0.97114 1.24848 0.93138 1.24990 0.97665 0.95424 0.96281 1.69973 1.30955 1.22529 1.29843 0.86698 0.81238 0.83122 0.77525 1.20810 1.21347 1.20050 1.21890 0.94094 0.89553 1.00851 0.91468 0.91982 0.91199 0.85720 0.86157 0.85896 0.84899 0.91476 0.91463 0.90437 0.91218 0.89339 0.95040 0.92165 0.93448 0.92530 0.93260 0.93170 0.95052 0.97265 0.93226 0.94270 0.90116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.01 9.79 36.01 0.35 -0.65 16 2 C -0.12 -1.44 5.89 -104.47 -0.62 -2.05 16 3 C -0.09 -0.88 9.70 -39.61 -0.38 -1.27 16 4 C -0.16 -1.61 10.04 -39.56 -0.40 -2.01 16 5 C -0.09 -0.94 10.04 -39.60 -0.40 -1.33 16 6 C -0.20 -2.54 8.27 -39.43 -0.33 -2.86 16 7 C 0.14 1.80 6.57 -39.22 -0.26 1.54 16 8 O -0.31 -4.21 8.85 -19.43 -0.17 -4.38 16 9 C 0.09 1.19 2.27 -26.65 -0.06 1.13 16 10 H 0.09 1.26 6.32 -51.93 -0.33 0.94 16 11 C -0.14 -1.71 5.28 -26.61 -0.14 -1.85 16 12 C -0.11 -1.47 6.09 -26.65 -0.16 -1.63 16 13 C 0.05 0.71 4.54 -3.83 -0.02 0.69 16 14 N -0.51 -8.24 4.06 -226.69 -0.92 -9.16 16 15 C 0.08 1.41 2.31 -67.72 -0.16 1.25 16 16 H 0.08 1.36 7.98 -51.93 -0.41 0.95 16 17 C -0.19 -2.52 8.44 37.16 0.31 -2.21 16 18 C -0.10 -2.05 4.55 -26.73 -0.12 -2.17 16 19 C 0.03 0.77 4.86 -27.88 -0.14 0.63 16 20 C -0.52 -14.76 9.11 -34.44 -0.31 -15.08 16 21 H 0.05 1.40 7.74 -52.49 -0.41 0.99 16 22 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 23 N -0.89 -27.15 13.29 55.43 0.74 -26.41 16 24 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 25 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 26 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 27 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 28 C 0.06 0.92 4.79 -3.83 -0.02 0.90 16 29 H 0.07 0.63 8.14 -51.92 -0.42 0.21 16 30 H 0.06 0.48 8.09 -51.93 -0.42 0.06 16 31 H 0.07 0.72 7.53 -51.93 -0.39 0.33 16 32 H 0.12 0.96 8.06 -52.49 -0.42 0.53 16 33 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 34 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 35 H 0.13 1.63 5.40 -52.49 -0.28 1.35 16 36 H 0.07 0.77 6.89 -51.93 -0.36 0.41 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.09 1.40 6.13 -51.93 -0.32 1.08 16 41 H 0.03 0.42 6.57 -51.93 -0.34 0.08 16 42 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.05 0.60 6.82 -51.93 -0.35 0.24 16 44 H 0.06 0.75 6.46 -51.93 -0.34 0.41 16 45 H 0.05 0.97 6.23 -51.93 -0.32 0.65 16 46 H 0.05 1.00 8.14 -51.92 -0.42 0.57 16 47 H 0.03 0.86 7.75 -51.93 -0.40 0.46 16 48 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 49 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 50 H 0.04 0.53 6.88 -51.93 -0.36 0.17 16 51 H 0.08 1.19 8.01 -51.93 -0.42 0.77 16 LS Contribution 389.36 15.07 5.87 5.87 Total: -1.00 -30.67 389.36 -11.26 -41.93 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -8.81 Total: 0.72 kcal Atomic # 6 Polarization: -22.48 SS G_CDS: -2.94 Total: -25.41 kcal Atomic # 7 Polarization: -35.39 SS G_CDS: -0.18 Total: -35.57 kcal Atomic # 8 Polarization: -4.21 SS G_CDS: -0.17 Total: -4.38 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -30.67 -11.26 -41.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172507414.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.219 kcal (2) G-P(sol) polarization free energy of solvation -30.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds