Wall clock time and date at job start Tue Mar 31 2020 11:43:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.38168 * 120.02613 * 2 1 4 4 C 1.38242 * 120.05277 * 179.97438 * 3 2 1 5 5 C 1.38287 * 120.11222 * 0.02562 * 4 3 2 6 6 C 1.38126 * 120.05549 * 359.68426 * 5 4 3 7 7 C 1.38704 * 120.02692 * 179.97438 * 2 1 3 8 8 O 1.35900 * 120.05669 * 0.02562 * 7 2 1 9 9 C 1.42904 * 117.00037 * 184.01778 * 8 7 2 10 10 H 1.09000 * 109.50638 * 35.56645 * 9 8 7 11 11 C 1.53125 * 109.49796 * 275.45125 * 9 8 7 12 12 C 1.53120 * 109.15582 * 182.40244 * 11 9 8 13 13 C 1.53038 * 109.27870 * 57.65812 * 12 11 9 14 14 N 1.46853 * 109.52141 * 300.81575 * 13 12 11 15 15 C 1.46902 * 110.99922 * 185.83958 * 14 13 12 16 16 H 1.08998 * 109.46731 * 55.41286 * 15 14 13 17 17 C 1.52998 * 109.47276 * 295.41238 * 15 14 13 18 18 C 1.53002 * 109.46844 * 175.40865 * 15 14 13 19 19 C 1.52999 * 109.47392 * 297.35353 * 18 15 14 20 20 C 1.50698 * 109.47041 * 175.48588 * 19 18 15 21 21 H 1.07995 * 120.00124 * 359.97438 * 20 19 18 22 22 C 1.37878 * 120.00017 * 179.97438 * 20 19 18 23 23 N 1.31521 * 120.00112 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00201 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.46825 * 180.02562 * 24 22 20 26 26 H 1.48497 * 109.47102 * 300.00134 * 24 22 20 27 27 H 1.48499 * 109.46897 * 59.99915 * 24 22 20 28 28 C 1.46840 * 111.19675 * 61.74351 * 14 13 12 29 29 H 1.08998 * 109.46911 * 270.02247 * 1 2 3 30 30 H 1.08995 * 109.46799 * 30.01984 * 1 2 3 31 31 H 1.08996 * 109.46930 * 150.02724 * 1 2 3 32 32 H 1.08005 * 119.96832 * 359.97438 * 3 2 1 33 33 H 1.08000 * 119.94292 * 179.97438 * 4 3 2 34 34 H 1.08003 * 119.96959 * 179.97438 * 5 4 3 35 35 H 1.08002 * 120.02436 * 180.32073 * 6 5 4 36 36 H 1.08995 * 109.52182 * 302.30163 * 11 9 8 37 37 H 1.08996 * 109.52567 * 62.43748 * 11 9 8 38 38 H 1.09008 * 109.50496 * 177.59293 * 12 11 9 39 39 H 1.08996 * 109.50780 * 297.71567 * 12 11 9 40 40 H 1.09001 * 109.46531 * 180.80480 * 13 12 11 41 41 H 1.08998 * 109.46473 * 60.83280 * 13 12 11 42 42 H 1.08998 * 109.46933 * 300.00132 * 17 15 14 43 43 H 1.09000 * 109.46885 * 59.99972 * 17 15 14 44 44 H 1.08999 * 109.46686 * 180.02562 * 17 15 14 45 45 H 1.09001 * 109.47310 * 177.34934 * 18 15 14 46 46 H 1.09004 * 109.47057 * 57.35407 * 18 15 14 47 47 H 1.08999 * 109.47315 * 55.48214 * 19 18 15 48 48 H 1.08997 * 109.46914 * 295.48636 * 19 18 15 49 49 H 0.97006 * 119.99710 * 0.02562 * 23 22 20 50 50 H 1.09004 * 109.46365 * 58.27294 * 28 14 13 51 51 H 1.08998 * 109.46704 * 178.24344 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1985 1.1963 0.0000 4 6 3.5809 1.1969 0.0005 5 6 4.2752 0.0010 0.0005 6 6 3.5887 -1.1976 0.0066 7 6 2.2012 -1.2009 0.0005 8 8 1.5234 -2.3788 0.0005 9 6 2.3007 -3.5746 0.0903 10 1 3.1616 -3.4014 0.7361 11 6 2.7813 -3.9779 -1.3065 12 6 3.5621 -5.2914 -1.2094 13 6 2.6673 -6.3664 -0.5884 14 7 2.2345 -5.9337 0.7465 15 6 1.4878 -6.9989 1.4289 16 1 2.0948 -7.9036 1.4630 17 6 0.1921 -7.2826 0.6662 18 6 1.1537 -6.5548 2.8544 19 6 2.4499 -6.3348 3.6370 20 6 2.1248 -5.7917 5.0046 21 1 1.0967 -5.6201 5.2872 22 6 3.1401 -5.5137 5.8952 23 7 4.3921 -5.7231 5.5513 24 14 2.7373 -4.8398 7.5902 25 1 3.9953 -4.6264 8.3497 26 1 2.0183 -3.5479 7.4512 27 1 1.8780 -5.8088 8.3167 28 6 1.4425 -4.6994 0.6737 29 1 -0.3633 0.0004 1.0277 30 1 -0.3633 0.8898 -0.5141 31 1 -0.3633 -0.8902 -0.5134 32 1 1.6584 2.1316 -0.0004 33 1 4.1195 2.1330 0.0001 34 1 5.3553 0.0042 0.0005 35 1 4.1315 -2.1313 0.0118 36 1 1.9215 -4.1129 -1.9626 37 1 3.4276 -3.1978 -1.7087 38 1 3.8704 -5.6061 -2.2065 39 1 4.4432 -5.1458 -0.5845 40 1 3.2248 -7.2993 -0.5047 41 1 1.7933 -6.5214 -1.2210 42 1 -0.4148 -6.3779 0.6320 43 1 0.4302 -7.5989 -0.3494 44 1 -0.3621 -8.0726 1.1728 45 1 0.5593 -7.3255 3.3452 46 1 0.5867 -5.6245 2.8216 47 1 3.0800 -5.6231 3.1037 48 1 2.9782 -7.2827 3.7387 49 1 4.6013 -6.0727 4.6709 50 1 0.5742 -4.8621 0.0351 51 1 1.1105 -4.4213 1.6739 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172507415.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:29 Heat of formation + Delta-G solvation = -31.626561 kcal Electronic energy + Delta-G solvation = -27718.225671 eV Core-core repulsion = 24195.767615 eV Total energy + Delta-G solvation = -3522.458056 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.56348 -39.15600 -37.32216 -34.98715 -33.20824 -32.73449 -30.64830 -30.47946 -29.55000 -28.71905 -26.74853 -24.99786 -24.08238 -23.70557 -21.92403 -21.47705 -21.35645 -20.15346 -18.99485 -17.90957 -16.67594 -16.50823 -15.72685 -15.47382 -15.19454 -14.88818 -14.58817 -14.34731 -13.92719 -13.70839 -13.62262 -13.42767 -13.24054 -13.09598 -12.87625 -12.65651 -12.40748 -12.30465 -12.18300 -12.02922 -11.82257 -11.49753 -11.36961 -11.34717 -11.08661 -10.88691 -10.76177 -10.60003 -10.53859 -10.34980 -10.10535 -9.98081 -9.75130 -9.55091 -8.81858 -8.38499 -8.20746 -8.06312 -7.92941 -6.23360 -3.90820 1.31955 1.46374 3.10342 3.49264 3.51651 3.69917 3.76452 4.23736 4.63402 4.68544 4.77765 4.81206 4.83328 4.93087 5.04893 5.14282 5.23343 5.25864 5.31983 5.37653 5.42612 5.50493 5.53804 5.56134 5.59470 5.63028 5.68823 5.69966 5.73777 5.81690 5.84447 5.90384 5.97210 6.02869 6.17474 6.19268 6.19828 6.21822 6.32600 6.37543 6.46583 6.52708 6.53115 6.72021 6.82466 7.10023 7.34222 7.39757 7.53277 7.63878 7.82624 8.37311 8.61266 9.03185 9.80852 11.17533 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.008932 B = 0.004472 C = 0.003474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3133.888555 B = 6259.440881 C = 8058.837996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.122 4.122 3 C -0.087 4.087 4 C -0.160 4.160 5 C -0.086 4.086 6 C -0.203 4.203 7 C 0.139 3.861 8 O -0.308 6.308 9 C 0.089 3.911 10 H 0.086 0.914 11 C -0.142 4.142 12 C -0.113 4.113 13 C 0.050 3.950 14 N -0.515 5.515 15 C 0.084 3.916 16 H 0.080 0.920 17 C -0.186 4.186 18 C -0.099 4.099 19 C 0.016 3.984 20 C -0.601 4.601 21 H 0.043 0.957 22 C 0.015 3.985 23 N -0.916 5.916 24 Si 1.064 2.936 25 H -0.283 1.283 26 H -0.289 1.289 27 H -0.289 1.289 28 C 0.061 3.939 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.125 0.875 33 H 0.120 0.880 34 H 0.122 0.878 35 H 0.131 0.869 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.074 0.926 40 H 0.076 0.924 41 H 0.033 0.967 42 H 0.055 0.945 43 H 0.049 0.951 44 H 0.060 0.940 45 H 0.051 0.949 46 H 0.051 0.949 47 H 0.024 0.976 48 H 0.000 1.000 49 H 0.269 0.731 50 H 0.040 0.960 51 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.437 7.741 -17.287 19.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.123 4.123 3 C -0.105 4.105 4 C -0.178 4.178 5 C -0.104 4.104 6 C -0.222 4.222 7 C 0.093 3.907 8 O -0.220 6.220 9 C 0.032 3.968 10 H 0.104 0.896 11 C -0.180 4.180 12 C -0.151 4.151 13 C -0.078 4.078 14 N -0.240 5.240 15 C -0.024 4.024 16 H 0.098 0.902 17 C -0.244 4.244 18 C -0.137 4.137 19 C -0.021 4.021 20 C -0.639 4.639 21 H 0.062 0.938 22 C -0.189 4.189 23 N -0.552 5.552 24 Si 0.893 3.107 25 H -0.209 1.209 26 H -0.216 1.216 27 H -0.216 1.216 28 C -0.067 4.067 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.143 0.857 33 H 0.138 0.862 34 H 0.140 0.860 35 H 0.149 0.851 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.088 0.912 39 H 0.093 0.907 40 H 0.094 0.906 41 H 0.051 0.949 42 H 0.074 0.926 43 H 0.068 0.932 44 H 0.079 0.921 45 H 0.069 0.931 46 H 0.070 0.930 47 H 0.042 0.958 48 H 0.018 0.982 49 H 0.080 0.920 50 H 0.058 0.942 51 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -3.552 8.299 -15.592 18.016 hybrid contribution -1.154 -0.776 -1.885 2.342 sum -4.706 7.523 -17.476 19.600 Atomic orbital electron populations 1.20591 0.90671 1.02395 1.02390 1.19269 0.96488 0.90421 1.06108 1.20838 0.94137 0.96616 0.98894 1.20992 0.94204 0.97962 1.04648 1.20935 0.99771 0.91892 0.97774 1.21372 0.93247 0.99683 1.07895 1.18819 0.90407 0.85712 0.95788 1.86017 1.36217 1.12218 1.87580 1.22433 0.94939 0.82676 0.96703 0.89628 1.22143 1.00626 0.98263 0.96984 1.21533 0.98967 0.93974 1.00661 1.22146 0.97833 0.98203 0.89612 1.61923 1.41021 1.03480 1.17617 1.21862 0.91905 0.93518 0.95125 0.90187 1.22502 0.99719 1.01954 1.00274 1.21654 1.00694 0.99690 0.91619 1.19121 0.92281 0.96130 0.94522 1.22117 0.94656 1.47024 1.00124 0.93838 1.25735 0.93375 0.95697 1.04045 1.70761 1.18723 1.42550 1.23203 0.83625 0.75460 0.76219 0.75432 1.20854 1.21602 1.21599 1.21960 0.93868 0.88782 1.02097 0.91324 0.92006 0.91247 0.85706 0.86170 0.85964 0.85079 0.91415 0.91399 0.91224 0.90683 0.90599 0.94925 0.92575 0.93219 0.92126 0.93052 0.92998 0.95793 0.98201 0.92014 0.94216 0.88643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.17 9.79 36.01 0.35 -0.82 16 2 C -0.12 -1.61 5.89 -104.47 -0.62 -2.23 16 3 C -0.09 -1.00 9.70 -39.61 -0.38 -1.38 16 4 C -0.16 -1.80 10.04 -39.56 -0.40 -2.20 16 5 C -0.09 -1.04 10.04 -39.60 -0.40 -1.44 16 6 C -0.20 -2.81 8.27 -39.43 -0.33 -3.14 16 7 C 0.14 2.03 6.57 -39.22 -0.26 1.77 16 8 O -0.31 -4.70 8.85 -19.43 -0.17 -4.87 16 9 C 0.09 1.32 2.28 -26.65 -0.06 1.26 16 10 H 0.09 1.41 6.26 -51.93 -0.32 1.09 16 11 C -0.14 -1.74 5.29 -26.60 -0.14 -1.88 16 12 C -0.11 -1.32 6.09 -26.65 -0.16 -1.49 16 13 C 0.05 0.65 5.01 -3.83 -0.02 0.63 16 14 N -0.52 -8.27 3.92 -226.69 -0.89 -9.16 16 15 C 0.08 1.39 2.38 -67.71 -0.16 1.23 16 16 H 0.08 1.35 8.09 -51.93 -0.42 0.93 16 17 C -0.19 -2.54 8.50 37.16 0.32 -2.22 16 18 C -0.10 -2.03 4.39 -26.73 -0.12 -2.15 16 19 C 0.02 0.43 4.21 -27.88 -0.12 0.31 16 20 C -0.60 -17.50 9.11 -34.44 -0.31 -17.81 16 21 H 0.04 1.25 7.74 -52.49 -0.41 0.85 16 22 C 0.01 0.44 5.46 -17.82 -0.10 0.35 16 23 N -0.92 -28.71 13.65 55.43 0.76 -27.96 16 24 Si 1.06 26.11 29.90 -169.99 -5.08 21.02 16 25 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 26 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 27 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 28 C 0.06 0.97 4.29 -3.84 -0.02 0.95 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.06 0.56 8.09 -51.93 -0.42 0.14 16 31 H 0.07 0.82 7.53 -51.93 -0.39 0.42 16 32 H 0.13 1.11 8.06 -52.48 -0.42 0.69 16 33 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 34 H 0.12 1.23 8.06 -52.48 -0.42 0.81 16 35 H 0.13 1.76 5.45 -52.49 -0.29 1.47 16 36 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.07 0.79 6.97 -51.93 -0.36 0.43 16 38 H 0.07 0.67 8.14 -51.92 -0.42 0.24 16 39 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.08 0.95 8.08 -51.93 -0.42 0.53 16 41 H 0.03 0.40 6.72 -51.93 -0.35 0.05 16 42 H 0.06 0.77 6.53 -51.93 -0.34 0.44 16 43 H 0.05 0.61 6.64 -51.93 -0.34 0.26 16 44 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 46 H 0.05 1.08 6.15 -51.93 -0.32 0.76 16 47 H 0.02 0.65 7.42 -51.93 -0.39 0.27 16 48 H 0.00 -0.01 8.01 -51.93 -0.42 -0.42 16 49 H 0.27 8.44 7.22 -40.82 -0.29 8.15 16 50 H 0.04 0.59 6.63 -51.93 -0.34 0.25 16 51 H 0.10 1.77 5.96 -51.93 -0.31 1.46 16 LS Contribution 387.48 15.07 5.84 5.84 Total: -1.00 -31.81 387.48 -11.20 -43.01 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -8.73 Total: 2.39 kcal Atomic # 6 Polarization: -27.35 SS G_CDS: -2.92 Total: -30.27 kcal Atomic # 7 Polarization: -36.98 SS G_CDS: -0.13 Total: -37.12 kcal Atomic # 8 Polarization: -4.70 SS G_CDS: -0.17 Total: -4.87 kcal Atomic # 14 Polarization: 26.11 SS G_CDS: -5.08 Total: 21.02 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -31.81 -11.20 -43.01 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172507415.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.380 kcal (2) G-P(sol) polarization free energy of solvation -31.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds