Wall clock time and date at job start Tue Mar 31 2020 11:43:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.38168 * 120.02613 * 2 1 4 4 C 1.38242 * 120.05277 * 179.97438 * 3 2 1 5 5 C 1.38287 * 120.11222 * 0.02562 * 4 3 2 6 6 C 1.38126 * 120.05549 * 359.68426 * 5 4 3 7 7 C 1.38704 * 120.02692 * 179.97438 * 2 1 3 8 8 O 1.35900 * 120.05669 * 0.02562 * 7 2 1 9 9 C 1.42904 * 117.00037 * 184.01778 * 8 7 2 10 10 H 1.09000 * 109.50638 * 35.56645 * 9 8 7 11 11 C 1.53125 * 109.49796 * 275.45125 * 9 8 7 12 12 C 1.53120 * 109.15582 * 182.40244 * 11 9 8 13 13 C 1.53038 * 109.27870 * 57.65812 * 12 11 9 14 14 N 1.46853 * 109.52141 * 300.81575 * 13 12 11 15 15 C 1.46902 * 110.99922 * 185.83958 * 14 13 12 16 16 H 1.08998 * 109.46731 * 55.41286 * 15 14 13 17 17 C 1.52998 * 109.47276 * 295.41238 * 15 14 13 18 18 C 1.53002 * 109.46844 * 175.40865 * 15 14 13 19 19 C 1.52999 * 109.47392 * 297.35353 * 18 15 14 20 20 C 1.50698 * 109.47041 * 175.48588 * 19 18 15 21 21 H 1.07995 * 120.00124 * 359.97438 * 20 19 18 22 22 C 1.37878 * 120.00017 * 179.97438 * 20 19 18 23 23 N 1.31521 * 120.00112 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00201 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.46825 * 180.02562 * 24 22 20 26 26 H 1.48497 * 109.47102 * 300.00134 * 24 22 20 27 27 H 1.48499 * 109.46897 * 59.99915 * 24 22 20 28 28 C 1.46840 * 111.19675 * 61.74351 * 14 13 12 29 29 H 1.08998 * 109.46911 * 270.02247 * 1 2 3 30 30 H 1.08995 * 109.46799 * 30.01984 * 1 2 3 31 31 H 1.08996 * 109.46930 * 150.02724 * 1 2 3 32 32 H 1.08005 * 119.96832 * 359.97438 * 3 2 1 33 33 H 1.08000 * 119.94292 * 179.97438 * 4 3 2 34 34 H 1.08003 * 119.96959 * 179.97438 * 5 4 3 35 35 H 1.08002 * 120.02436 * 180.32073 * 6 5 4 36 36 H 1.08995 * 109.52182 * 302.30163 * 11 9 8 37 37 H 1.08996 * 109.52567 * 62.43748 * 11 9 8 38 38 H 1.09008 * 109.50496 * 177.59293 * 12 11 9 39 39 H 1.08996 * 109.50780 * 297.71567 * 12 11 9 40 40 H 1.09001 * 109.46531 * 180.80480 * 13 12 11 41 41 H 1.08998 * 109.46473 * 60.83280 * 13 12 11 42 42 H 1.08998 * 109.46933 * 300.00132 * 17 15 14 43 43 H 1.09000 * 109.46885 * 59.99972 * 17 15 14 44 44 H 1.08999 * 109.46686 * 180.02562 * 17 15 14 45 45 H 1.09001 * 109.47310 * 177.34934 * 18 15 14 46 46 H 1.09004 * 109.47057 * 57.35407 * 18 15 14 47 47 H 1.08999 * 109.47315 * 55.48214 * 19 18 15 48 48 H 1.08997 * 109.46914 * 295.48636 * 19 18 15 49 49 H 0.97006 * 119.99710 * 0.02562 * 23 22 20 50 50 H 1.09004 * 109.46365 * 58.27294 * 28 14 13 51 51 H 1.08998 * 109.46704 * 178.24344 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1985 1.1963 0.0000 4 6 3.5809 1.1969 0.0005 5 6 4.2752 0.0010 0.0005 6 6 3.5887 -1.1976 0.0066 7 6 2.2012 -1.2009 0.0005 8 8 1.5234 -2.3788 0.0005 9 6 2.3007 -3.5746 0.0903 10 1 3.1616 -3.4014 0.7361 11 6 2.7813 -3.9779 -1.3065 12 6 3.5621 -5.2914 -1.2094 13 6 2.6673 -6.3664 -0.5884 14 7 2.2345 -5.9337 0.7465 15 6 1.4878 -6.9989 1.4289 16 1 2.0948 -7.9036 1.4630 17 6 0.1921 -7.2826 0.6662 18 6 1.1537 -6.5548 2.8544 19 6 2.4499 -6.3348 3.6370 20 6 2.1248 -5.7917 5.0046 21 1 1.0967 -5.6201 5.2872 22 6 3.1401 -5.5137 5.8952 23 7 4.3921 -5.7231 5.5513 24 14 2.7373 -4.8398 7.5902 25 1 3.9953 -4.6264 8.3497 26 1 2.0183 -3.5479 7.4512 27 1 1.8780 -5.8088 8.3167 28 6 1.4425 -4.6994 0.6737 29 1 -0.3633 0.0004 1.0277 30 1 -0.3633 0.8898 -0.5141 31 1 -0.3633 -0.8902 -0.5134 32 1 1.6584 2.1316 -0.0004 33 1 4.1195 2.1330 0.0001 34 1 5.3553 0.0042 0.0005 35 1 4.1315 -2.1313 0.0118 36 1 1.9215 -4.1129 -1.9626 37 1 3.4276 -3.1978 -1.7087 38 1 3.8704 -5.6061 -2.2065 39 1 4.4432 -5.1458 -0.5845 40 1 3.2248 -7.2993 -0.5047 41 1 1.7933 -6.5214 -1.2210 42 1 -0.4148 -6.3779 0.6320 43 1 0.4302 -7.5989 -0.3494 44 1 -0.3621 -8.0726 1.1728 45 1 0.5593 -7.3255 3.3452 46 1 0.5867 -5.6245 2.8216 47 1 3.0800 -5.6231 3.1037 48 1 2.9782 -7.2827 3.7387 49 1 4.6013 -6.0727 4.6709 50 1 0.5742 -4.8621 0.0351 51 1 1.1105 -4.4213 1.6739 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172507415.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:29 Heat of formation + Delta-G solvation = -48.251771 kcal Electronic energy + Delta-G solvation = -27718.946595 eV Core-core repulsion = 24195.767615 eV Total energy + Delta-G solvation = -3523.178979 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.64920 -40.30735 -38.41963 -36.47447 -35.08885 -33.73100 -32.11652 -31.71975 -30.59644 -30.15590 -27.67252 -26.76603 -25.48021 -24.83463 -23.58285 -22.64783 -22.44259 -21.45153 -20.24677 -19.00307 -18.79895 -17.81425 -16.77067 -16.50197 -16.32916 -16.07394 -15.68946 -15.64328 -15.53943 -15.16459 -14.97721 -14.56989 -14.52196 -14.25863 -14.09059 -14.03421 -13.85608 -13.49908 -13.31980 -13.17074 -13.10922 -12.80853 -12.64072 -12.51457 -12.40870 -12.27681 -12.02115 -11.99294 -11.81550 -11.67234 -11.64089 -11.52081 -11.51768 -11.16778 -10.55812 -10.49140 -9.77790 -9.17751 -9.06726 -8.64109 -6.32907 0.35574 0.47938 1.49132 1.58219 1.77179 1.99396 2.56972 2.79771 3.06197 3.20316 3.59392 3.65538 3.83456 3.86958 3.88223 3.94450 4.07049 4.16918 4.17871 4.21494 4.30825 4.37009 4.39917 4.45885 4.54203 4.59800 4.61504 4.67909 4.73196 4.77173 4.80048 4.84214 4.86791 4.90404 4.92238 4.95404 4.98412 5.09427 5.15479 5.22757 5.29770 5.33249 5.41576 5.49941 5.52338 5.58095 5.66433 5.87886 6.06957 6.11906 6.19197 6.28203 6.44469 6.65511 7.48427 8.76363 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.008932 B = 0.004472 C = 0.003474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3133.888555 B = 6259.440881 C = 8058.837996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.138 4.138 3 C -0.087 4.087 4 C -0.157 4.157 5 C -0.096 4.096 6 C -0.221 4.221 7 C 0.109 3.891 8 O -0.320 6.320 9 C 0.093 3.907 10 H 0.057 0.943 11 C -0.131 4.131 12 C -0.109 4.109 13 C 0.050 3.950 14 N -0.539 5.539 15 C 0.089 3.911 16 H 0.078 0.922 17 C -0.174 4.174 18 C -0.089 4.089 19 C 0.025 3.975 20 C -0.619 4.619 21 H 0.043 0.957 22 C -0.039 4.039 23 N -0.938 5.938 24 Si 1.112 2.888 25 H -0.282 1.282 26 H -0.273 1.273 27 H -0.267 1.267 28 C 0.069 3.931 29 H 0.064 0.936 30 H 0.087 0.913 31 H 0.058 0.942 32 H 0.155 0.845 33 H 0.150 0.850 34 H 0.140 0.860 35 H 0.124 0.876 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.100 0.900 39 H 0.058 0.942 40 H 0.081 0.919 41 H 0.050 0.950 42 H 0.053 0.947 43 H 0.071 0.929 44 H 0.068 0.932 45 H 0.052 0.948 46 H 0.045 0.955 47 H 0.001 0.999 48 H -0.023 1.023 49 H 0.255 0.745 50 H 0.053 0.947 51 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.383 8.839 -18.534 21.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.139 4.139 3 C -0.105 4.105 4 C -0.175 4.175 5 C -0.114 4.114 6 C -0.239 4.239 7 C 0.064 3.936 8 O -0.233 6.233 9 C 0.037 3.963 10 H 0.075 0.925 11 C -0.168 4.168 12 C -0.146 4.146 13 C -0.077 4.077 14 N -0.264 5.264 15 C -0.019 4.019 16 H 0.096 0.904 17 C -0.233 4.233 18 C -0.126 4.126 19 C -0.012 4.012 20 C -0.657 4.657 21 H 0.061 0.939 22 C -0.236 4.236 23 N -0.576 5.576 24 Si 0.933 3.067 25 H -0.207 1.207 26 H -0.199 1.199 27 H -0.192 1.192 28 C -0.059 4.059 29 H 0.082 0.918 30 H 0.106 0.894 31 H 0.077 0.923 32 H 0.173 0.827 33 H 0.168 0.832 34 H 0.158 0.842 35 H 0.142 0.858 36 H 0.096 0.904 37 H 0.091 0.909 38 H 0.119 0.881 39 H 0.077 0.923 40 H 0.100 0.900 41 H 0.069 0.931 42 H 0.072 0.928 43 H 0.090 0.910 44 H 0.087 0.913 45 H 0.071 0.929 46 H 0.064 0.936 47 H 0.020 0.980 48 H -0.004 1.004 49 H 0.064 0.936 50 H 0.071 0.929 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.511 9.385 -16.866 19.822 hybrid contribution -0.821 -1.062 -1.496 2.010 sum -5.331 8.324 -18.362 20.854 Atomic orbital electron populations 1.20599 0.89638 1.03193 1.02325 1.19652 0.97571 0.90522 1.06132 1.21244 0.94530 0.97120 0.97600 1.21398 0.94429 0.98718 1.02993 1.21252 1.00889 0.91750 0.97461 1.21475 0.93268 1.00287 1.08908 1.19150 0.91000 0.85918 0.97540 1.85971 1.36641 1.12592 1.88102 1.22328 0.93641 0.82510 0.97868 0.92477 1.22051 1.01005 0.98656 0.95117 1.21540 0.97928 0.93307 1.01864 1.22245 0.98676 0.98742 0.88084 1.61853 1.41262 1.03421 1.19893 1.21677 0.93729 0.93339 0.93128 0.90431 1.22367 0.97712 1.02179 1.01011 1.21478 0.97665 0.99575 0.93922 1.18963 0.94321 0.93960 0.93966 1.22578 0.94702 1.46762 1.01647 0.93887 1.27323 0.92845 0.95360 1.08064 1.70900 1.19838 1.44224 1.22631 0.83017 0.75818 0.76748 0.71089 1.20724 1.19894 1.19246 1.21789 0.94552 0.89249 1.00264 0.91754 0.89391 0.92258 0.82706 0.83200 0.84173 0.85839 0.90446 0.90866 0.88133 0.92311 0.90048 0.93146 0.92771 0.90963 0.91276 0.92888 0.93638 0.98018 1.00449 0.93582 0.92908 0.92324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.20 9.79 71.24 0.70 -1.51 16 2 C -0.14 -3.57 5.89 -19.77 -0.12 -3.69 16 3 C -0.09 -1.84 9.70 22.25 0.22 -1.62 16 4 C -0.16 -3.23 10.04 22.28 0.22 -3.01 16 5 C -0.10 -2.27 10.04 22.25 0.22 -2.05 16 6 C -0.22 -6.30 8.27 22.37 0.19 -6.11 16 7 C 0.11 3.29 6.57 22.50 0.15 3.43 16 8 O -0.32 -10.19 8.85 -92.42 -0.82 -11.01 16 9 C 0.09 2.88 2.28 30.65 0.07 2.95 16 10 H 0.06 2.06 6.26 -2.39 -0.01 2.05 16 11 C -0.13 -3.13 5.29 30.68 0.16 -2.97 16 12 C -0.11 -2.42 6.09 30.65 0.19 -2.24 16 13 C 0.05 1.23 5.01 86.32 0.43 1.66 16 14 N -0.54 -17.58 3.92 -871.11 -3.41 -20.99 16 15 C 0.09 2.96 2.38 44.91 0.11 3.07 16 16 H 0.08 2.61 8.09 -2.39 -0.02 2.59 16 17 C -0.17 -4.46 8.50 71.98 0.61 -3.84 16 18 C -0.09 -3.76 4.39 30.59 0.13 -3.63 16 19 C 0.02 1.36 4.21 29.85 0.13 1.48 16 20 C -0.62 -37.12 9.11 25.60 0.23 -36.89 16 21 H 0.04 2.52 7.74 -2.91 -0.02 2.50 16 22 C -0.04 -2.35 5.46 84.65 0.46 -1.89 16 23 N -0.94 -60.65 13.65 21.45 0.29 -60.35 16 24 Si 1.11 52.69 29.90 68.60 2.05 54.74 16 25 H -0.28 -13.24 7.11 99.48 0.71 -12.54 16 26 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 27 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 28 C 0.07 2.28 4.29 86.33 0.37 2.65 16 29 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.09 1.41 8.09 -2.39 -0.02 1.39 16 31 H 0.06 1.39 7.53 -2.39 -0.02 1.37 16 32 H 0.16 2.25 8.06 -2.91 -0.02 2.22 16 33 H 0.15 2.14 8.06 -2.91 -0.02 2.12 16 34 H 0.14 2.69 8.06 -2.91 -0.02 2.67 16 35 H 0.12 3.57 5.45 -2.91 -0.02 3.56 16 36 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.07 1.68 6.97 -2.39 -0.02 1.66 16 38 H 0.10 1.66 8.14 -2.38 -0.02 1.64 16 39 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.08 1.93 8.08 -2.39 -0.02 1.91 16 41 H 0.05 1.09 6.72 -2.39 -0.02 1.07 16 42 H 0.05 1.41 6.53 -2.39 -0.02 1.40 16 43 H 0.07 1.55 6.64 -2.39 -0.02 1.53 16 44 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 45 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 46 H 0.04 1.97 6.15 -2.39 -0.01 1.96 16 47 H 0.00 0.09 7.42 -2.39 -0.02 0.07 16 48 H -0.02 -1.33 8.01 -2.39 -0.02 -1.34 16 49 H 0.25 16.76 7.22 -92.70 -0.67 16.09 16 50 H 0.05 1.56 6.63 -2.38 -0.02 1.55 16 51 H 0.06 2.33 5.96 -2.39 -0.01 2.31 16 Total: -1.00 -71.60 387.48 3.57 -68.03 By element: Atomic # 1 Polarization: 22.78 SS G_CDS: 0.99 Total: 23.76 kcal Atomic # 6 Polarization: -58.65 SS G_CDS: 4.47 Total: -54.18 kcal Atomic # 7 Polarization: -78.22 SS G_CDS: -3.12 Total: -81.34 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: -0.82 Total: -11.01 kcal Atomic # 14 Polarization: 52.69 SS G_CDS: 2.05 Total: 54.74 kcal Total: -71.60 3.57 -68.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172507415.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.777 kcal (2) G-P(sol) polarization free energy of solvation -71.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds