Wall clock time and date at job start Tue Mar 31 2020 11:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38166 * 120.03070 * 2 1 4 4 C 1.38244 * 120.05259 * 180.29731 * 3 2 1 5 5 C 1.38287 * 120.11585 * 359.67210 * 4 3 2 6 6 C 1.38120 * 120.05332 * 0.04751 * 5 4 3 7 7 C 1.38713 * 120.02501 * 179.71636 * 2 1 3 8 8 O 1.35899 * 120.05712 * 0.02562 * 7 2 1 9 9 C 1.42903 * 117.00151 * 174.19825 * 8 7 2 10 10 H 1.08998 * 109.50238 * 328.05610 * 9 8 7 11 11 C 1.53122 * 109.50199 * 88.17344 * 9 8 7 12 12 C 1.53111 * 109.15861 * 177.59455 * 11 9 8 13 13 C 1.53042 * 109.28293 * 302.34627 * 12 11 9 14 14 N 1.46822 * 109.51617 * 59.17706 * 13 12 11 15 15 C 1.46903 * 110.98575 * 174.15764 * 14 13 12 16 16 H 1.09002 * 109.46766 * 312.68312 * 15 14 13 17 17 C 1.52999 * 109.46689 * 72.68611 * 15 14 13 18 18 C 1.53001 * 109.46990 * 192.68817 * 15 14 13 19 19 C 1.52999 * 109.47302 * 66.12783 * 18 15 14 20 20 C 1.50698 * 109.46807 * 183.97251 * 19 18 15 21 21 H 1.08005 * 120.00467 * 359.97438 * 20 19 18 22 22 C 1.37884 * 119.99855 * 180.02562 * 20 19 18 23 23 N 1.31517 * 119.99918 * 179.97438 * 22 20 19 24 24 Si 1.86802 * 119.99841 * 359.97438 * 22 20 19 25 25 H 1.48495 * 109.47217 * 89.99907 * 24 22 20 26 26 H 1.48503 * 109.46639 * 210.00123 * 24 22 20 27 27 H 1.48499 * 109.47014 * 329.99656 * 24 22 20 28 28 C 1.46852 * 111.21158 * 298.25673 * 14 13 12 29 29 H 1.08995 * 109.46945 * 270.28401 * 1 2 3 30 30 H 1.09003 * 109.46673 * 30.28099 * 1 2 3 31 31 H 1.08996 * 109.47067 * 150.27688 * 1 2 3 32 32 H 1.07996 * 119.96987 * 359.97438 * 3 2 1 33 33 H 1.08000 * 119.93920 * 179.69764 * 4 3 2 34 34 H 1.07993 * 119.97646 * 180.02562 * 5 4 3 35 35 H 1.08000 * 120.03207 * 179.97438 * 6 5 4 36 36 H 1.08994 * 109.52140 * 297.50300 * 11 9 8 37 37 H 1.09002 * 109.52368 * 57.68939 * 11 9 8 38 38 H 1.09007 * 109.50561 * 62.28675 * 12 11 9 39 39 H 1.09000 * 109.50541 * 182.36334 * 12 11 9 40 40 H 1.08995 * 109.46087 * 179.19788 * 13 12 11 41 41 H 1.08999 * 109.45880 * 299.17511 * 13 12 11 42 42 H 1.08999 * 109.47346 * 299.99959 * 17 15 14 43 43 H 1.08999 * 109.47269 * 60.00431 * 17 15 14 44 44 H 1.09004 * 109.46664 * 180.02562 * 17 15 14 45 45 H 1.09005 * 109.46733 * 186.13274 * 18 15 14 46 46 H 1.09002 * 109.47299 * 306.12489 * 18 15 14 47 47 H 1.08998 * 109.46946 * 303.96954 * 19 18 15 48 48 H 1.09002 * 109.47134 * 63.97222 * 19 18 15 49 49 H 0.97002 * 119.99667 * 180.02562 * 23 22 20 50 50 H 1.09004 * 109.45770 * 301.73171 * 28 14 13 51 51 H 1.09005 * 109.46268 * 181.75872 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1985 1.1962 0.0000 4 6 3.5809 1.1967 -0.0062 5 6 4.2753 0.0008 -0.0056 6 6 3.5887 -1.1977 0.0002 7 6 2.2011 -1.2010 0.0059 8 8 1.5233 -2.3789 0.0113 9 6 2.2977 -3.5736 -0.1115 10 1 3.1763 -3.3763 -0.7257 11 6 2.7390 -4.0418 1.2780 12 6 3.5165 -5.3538 1.1427 13 6 2.6342 -6.3951 0.4504 14 7 2.2393 -5.9005 -0.8745 15 6 1.5067 -6.9301 -1.6236 16 1 2.0437 -7.8766 -1.5602 17 6 0.1077 -7.0964 -1.0268 18 6 1.3891 -6.5076 -3.0894 19 6 2.7793 -6.4894 -3.7280 20 6 2.6756 -5.9799 -5.1425 21 1 1.7142 -5.6978 -5.5458 22 6 3.8080 -5.8750 -5.9222 23 7 3.7174 -5.4309 -7.1568 24 14 5.4706 -6.3636 -5.2249 25 1 5.7181 -7.8023 -5.4969 26 1 6.5345 -5.5486 -5.8648 27 1 5.4811 -6.1280 -3.7588 28 6 1.4506 -4.6663 -0.7675 29 1 -0.3633 0.0051 1.0276 30 1 -0.3633 0.8875 -0.5182 31 1 -0.3633 -0.8924 -0.5095 32 1 1.6586 2.1315 -0.0004 33 1 4.1196 2.1328 -0.0111 34 1 5.3552 0.0038 -0.0100 35 1 4.1313 -2.1315 0.0003 36 1 3.3785 -3.2844 1.7314 37 1 1.8614 -4.2013 1.9044 38 1 4.4147 -5.1851 0.5485 39 1 3.7974 -5.7141 2.1324 40 1 3.1899 -7.3262 0.3397 41 1 1.7428 -6.5734 1.0518 42 1 0.1916 -7.3974 0.0174 43 1 -0.4292 -6.1500 -1.0902 44 1 -0.4357 -7.8608 -1.5824 45 1 0.7539 -7.2157 -3.6217 46 1 0.9500 -5.5116 -3.1463 47 1 3.4346 -5.8349 -3.1533 48 1 3.1894 -7.4993 -3.7347 49 1 4.5140 -5.3574 -7.7054 50 1 0.5648 -4.8529 -0.1602 51 1 1.1468 -4.3420 -1.7628 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172507416.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:31 Heat of formation + Delta-G solvation = -42.758025 kcal Electronic energy + Delta-G solvation = -27646.366391 eV Core-core repulsion = 24123.425639 eV Total energy + Delta-G solvation = -3522.940753 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.59370 -40.23526 -38.37158 -36.30455 -34.85151 -33.71902 -32.55875 -31.64511 -30.53851 -30.40529 -27.65401 -27.22603 -25.43107 -24.79865 -23.01819 -22.49303 -22.43611 -21.31874 -20.23396 -19.03833 -18.74598 -17.72400 -16.72249 -16.46373 -16.34184 -16.25684 -15.94520 -15.56407 -15.41590 -15.02194 -14.96340 -14.59434 -14.36132 -14.27288 -14.08770 -14.01063 -13.61233 -13.50739 -13.42058 -13.22452 -13.15800 -12.86938 -12.78962 -12.49665 -12.35079 -12.25722 -12.07246 -11.82155 -11.69644 -11.63141 -11.54381 -11.43830 -11.36817 -11.26976 -10.96329 -10.72265 -9.75704 -9.13459 -9.04327 -8.26814 -6.28956 0.37645 0.49973 1.34972 1.37886 1.51916 2.04261 2.38795 2.81726 3.09430 3.11496 3.65434 3.71035 3.86171 3.90662 3.93828 4.00247 4.12555 4.19663 4.25307 4.26570 4.38406 4.41210 4.42205 4.52388 4.59700 4.66646 4.69443 4.71744 4.77213 4.80800 4.82116 4.90790 4.92847 4.95142 4.97644 4.98489 5.04907 5.14820 5.22194 5.29378 5.31561 5.38971 5.43389 5.54187 5.57797 5.60181 5.69058 5.75864 5.90148 6.16817 6.26609 6.33895 6.48375 6.79614 7.35346 8.90524 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.009986 B = 0.004236 C = 0.003568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2803.340938 B = 6608.083049 C = 7846.554516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.139 4.139 3 C -0.089 4.089 4 C -0.159 4.159 5 C -0.095 4.095 6 C -0.219 4.219 7 C 0.110 3.890 8 O -0.319 6.319 9 C 0.089 3.911 10 H 0.065 0.935 11 C -0.130 4.130 12 C -0.109 4.109 13 C 0.050 3.950 14 N -0.538 5.538 15 C 0.089 3.911 16 H 0.088 0.912 17 C -0.175 4.175 18 C -0.089 4.089 19 C 0.002 3.998 20 C -0.529 4.529 21 H 0.025 0.975 22 C 0.002 3.998 23 N -0.956 5.956 24 Si 0.950 3.050 25 H -0.265 1.265 26 H -0.287 1.287 27 H -0.246 1.246 28 C 0.067 3.933 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.053 0.947 32 H 0.153 0.847 33 H 0.148 0.852 34 H 0.141 0.859 35 H 0.128 0.872 36 H 0.071 0.929 37 H 0.075 0.925 38 H 0.062 0.938 39 H 0.098 0.902 40 H 0.084 0.916 41 H 0.047 0.953 42 H 0.069 0.931 43 H 0.052 0.948 44 H 0.067 0.933 45 H 0.052 0.948 46 H 0.039 0.961 47 H 0.026 0.974 48 H 0.011 0.989 49 H 0.264 0.736 50 H 0.053 0.947 51 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.182 7.115 23.880 25.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.140 4.140 3 C -0.107 4.107 4 C -0.177 4.177 5 C -0.113 4.113 6 C -0.238 4.238 7 C 0.065 3.935 8 O -0.233 6.233 9 C 0.033 3.967 10 H 0.083 0.917 11 C -0.168 4.168 12 C -0.147 4.147 13 C -0.077 4.077 14 N -0.264 5.264 15 C -0.019 4.019 16 H 0.106 0.894 17 C -0.234 4.234 18 C -0.127 4.127 19 C -0.035 4.035 20 C -0.567 4.567 21 H 0.043 0.957 22 C -0.194 4.194 23 N -0.598 5.598 24 Si 0.774 3.226 25 H -0.190 1.190 26 H -0.213 1.213 27 H -0.169 1.169 28 C -0.061 4.061 29 H 0.094 0.906 30 H 0.099 0.901 31 H 0.072 0.928 32 H 0.170 0.830 33 H 0.166 0.834 34 H 0.159 0.841 35 H 0.146 0.854 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.081 0.919 39 H 0.116 0.884 40 H 0.103 0.897 41 H 0.065 0.935 42 H 0.088 0.912 43 H 0.071 0.929 44 H 0.086 0.914 45 H 0.071 0.929 46 H 0.058 0.942 47 H 0.044 0.956 48 H 0.029 0.971 49 H 0.073 0.927 50 H 0.071 0.929 51 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.878 7.214 23.500 24.654 hybrid contribution 0.128 -0.354 -0.416 0.561 sum -1.750 6.860 23.084 24.145 Atomic orbital electron populations 1.20596 0.89720 1.02808 1.02647 1.19649 0.97531 0.90624 1.06148 1.21225 0.94560 0.97133 0.97732 1.21390 0.94411 0.98787 1.03108 1.21251 1.00902 0.91753 0.97436 1.21486 0.93211 1.00330 1.08776 1.19135 0.91003 0.85916 0.97456 1.85986 1.36887 1.12643 1.87745 1.22408 0.94009 0.82535 0.97781 0.91732 1.22026 1.01078 0.98471 0.95183 1.21545 0.98129 0.93516 1.01505 1.22239 0.98823 0.98534 0.88131 1.61859 1.42651 1.03949 1.17941 1.21713 0.93290 0.94296 0.92578 0.89356 1.22378 0.97249 1.02245 1.01542 1.21424 0.97547 0.99737 0.93970 1.19362 0.95486 0.95719 0.92956 1.21629 0.93902 1.42590 0.98576 0.95661 1.26014 1.03686 0.94792 0.94872 1.70091 1.30686 1.49247 1.09762 0.85650 0.78250 0.78647 0.80085 1.19050 1.21310 1.16905 1.21841 0.94715 0.89551 0.99979 0.90607 0.90112 0.92791 0.82969 0.83405 0.84125 0.85399 0.90992 0.90676 0.91933 0.88379 0.89722 0.93466 0.91201 0.92902 0.91395 0.92888 0.94194 0.95583 0.97095 0.92726 0.92851 0.92222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.12 9.79 71.24 0.70 -1.42 16 2 C -0.14 -3.43 5.89 -19.77 -0.12 -3.55 16 3 C -0.09 -1.80 9.70 22.25 0.22 -1.59 16 4 C -0.16 -3.12 10.04 22.28 0.22 -2.90 16 5 C -0.10 -2.12 10.04 22.25 0.22 -1.90 16 6 C -0.22 -5.79 8.43 22.37 0.19 -5.60 16 7 C 0.11 3.11 6.60 22.51 0.15 3.26 16 8 O -0.32 -9.41 8.84 -92.41 -0.82 -10.23 16 9 C 0.09 2.48 2.26 30.65 0.07 2.55 16 10 H 0.06 2.05 6.11 -2.39 -0.01 2.03 16 11 C -0.13 -2.78 5.37 30.67 0.16 -2.62 16 12 C -0.11 -2.13 6.09 30.65 0.19 -1.94 16 13 C 0.05 1.09 5.17 86.33 0.45 1.53 16 14 N -0.54 -15.66 4.02 -871.15 -3.50 -19.17 16 15 C 0.09 2.66 2.28 44.91 0.10 2.77 16 16 H 0.09 2.52 7.93 -2.39 -0.02 2.50 16 17 C -0.18 -4.21 8.40 71.98 0.60 -3.60 16 18 C -0.09 -3.54 4.60 30.59 0.14 -3.40 16 19 C 0.00 0.11 3.98 29.85 0.12 0.22 16 20 C -0.53 -31.89 9.66 25.60 0.25 -31.64 16 21 H 0.03 1.67 7.99 -2.91 -0.02 1.65 16 22 C 0.00 0.13 5.47 84.66 0.46 0.60 16 23 N -0.96 -62.35 13.96 21.45 0.30 -62.05 16 24 Si 0.95 46.28 27.47 68.60 1.88 48.16 16 25 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 26 H -0.29 -13.73 7.11 99.48 0.71 -13.03 16 27 H -0.25 -11.25 6.54 99.48 0.65 -10.60 16 28 C 0.07 1.99 4.13 86.32 0.36 2.34 16 29 H 0.08 1.38 8.14 -2.39 -0.02 1.37 16 30 H 0.08 1.36 8.09 -2.39 -0.02 1.34 16 31 H 0.05 1.31 7.53 -2.39 -0.02 1.29 16 32 H 0.15 2.16 8.06 -2.91 -0.02 2.14 16 33 H 0.15 2.03 8.06 -2.91 -0.02 2.01 16 34 H 0.14 2.47 8.06 -2.91 -0.02 2.45 16 35 H 0.13 3.31 5.53 -2.91 -0.02 3.29 16 36 H 0.07 1.48 7.25 -2.39 -0.02 1.46 16 37 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.06 1.38 8.14 -2.38 -0.02 1.37 16 39 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.08 1.73 7.99 -2.39 -0.02 1.71 16 41 H 0.05 0.91 6.97 -2.39 -0.02 0.89 16 42 H 0.07 1.39 6.92 -2.39 -0.02 1.38 16 43 H 0.05 1.33 6.45 -2.39 -0.02 1.31 16 44 H 0.07 1.55 8.14 -2.38 -0.02 1.53 16 45 H 0.05 2.09 8.14 -2.38 -0.02 2.07 16 46 H 0.04 1.69 6.29 -2.39 -0.02 1.68 16 47 H 0.03 1.28 6.74 -2.39 -0.02 1.27 16 48 H 0.01 0.51 7.57 -2.39 -0.02 0.49 16 49 H 0.26 16.05 8.31 -92.71 -0.77 15.28 16 50 H 0.05 1.44 6.57 -2.38 -0.02 1.42 16 51 H 0.06 2.13 6.23 -2.38 -0.01 2.11 16 Total: -1.00 -71.63 386.46 3.18 -68.45 By element: Atomic # 1 Polarization: 20.88 SS G_CDS: 0.83 Total: 21.71 kcal Atomic # 6 Polarization: -51.36 SS G_CDS: 4.48 Total: -46.88 kcal Atomic # 7 Polarization: -78.01 SS G_CDS: -3.20 Total: -81.22 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: -0.82 Total: -10.23 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 1.88 Total: 48.16 kcal Total: -71.63 3.18 -68.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172507416.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.696 kcal (2) G-P(sol) polarization free energy of solvation -71.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds