Wall clock time and date at job start Tue Mar 31 2020 11:43:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38169 * 120.02551 * 2 1 4 4 C 1.38247 * 120.05183 * 180.29911 * 3 2 1 5 5 C 1.38283 * 120.11399 * 359.67161 * 4 3 2 6 6 C 1.38127 * 120.05318 * 0.04634 * 5 4 3 7 7 C 1.38705 * 120.02846 * 179.71485 * 2 1 3 8 8 O 1.35897 * 120.05724 * 0.02562 * 7 2 1 9 9 C 1.42908 * 117.00241 * 174.16291 * 8 7 2 10 10 H 1.08996 * 109.50002 * 324.59795 * 9 8 7 11 11 C 1.53120 * 109.50274 * 84.67467 * 9 8 7 12 12 C 1.53121 * 109.15955 * 177.55978 * 11 9 8 13 13 C 1.53042 * 109.30666 * 302.40193 * 12 11 9 14 14 N 1.46853 * 109.52337 * 59.16110 * 13 12 11 15 15 C 1.46894 * 110.99927 * 174.16301 * 14 13 12 16 16 H 1.09005 * 109.47235 * 179.60605 * 15 14 13 17 17 C 1.52997 * 109.47426 * 59.60221 * 15 14 13 18 18 C 1.53001 * 109.47021 * 299.60304 * 15 14 13 19 19 C 1.52999 * 109.47384 * 298.51422 * 18 15 14 20 20 C 1.50697 * 109.47485 * 184.99991 * 19 18 15 21 21 H 1.08001 * 120.00062 * 359.97438 * 20 19 18 22 22 C 1.37877 * 120.00121 * 179.97438 * 20 19 18 23 23 N 1.31517 * 120.00202 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99926 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47375 * 359.97438 * 24 22 20 26 26 H 1.48502 * 109.47102 * 120.00327 * 24 22 20 27 27 H 1.48504 * 109.46894 * 239.99806 * 24 22 20 28 28 C 1.46846 * 111.19563 * 298.25556 * 14 13 12 29 29 H 1.08996 * 109.47710 * 270.27796 * 1 2 3 30 30 H 1.08996 * 109.47342 * 30.28222 * 1 2 3 31 31 H 1.09002 * 109.47069 * 150.28049 * 1 2 3 32 32 H 1.07999 * 119.97376 * 359.97438 * 3 2 1 33 33 H 1.07999 * 119.94049 * 179.69770 * 4 3 2 34 34 H 1.07997 * 119.97508 * 180.02562 * 5 4 3 35 35 H 1.08009 * 120.02712 * 179.97438 * 6 5 4 36 36 H 1.08999 * 109.49693 * 57.67030 * 11 9 8 37 37 H 1.09003 * 109.55579 * 297.47536 * 11 9 8 38 38 H 1.08993 * 109.50661 * 182.44443 * 12 11 9 39 39 H 1.09003 * 109.50383 * 62.35806 * 12 11 9 40 40 H 1.09000 * 109.45917 * 179.17370 * 13 12 11 41 41 H 1.08993 * 109.46380 * 299.15384 * 13 12 11 42 42 H 1.09001 * 109.47114 * 180.02562 * 17 15 14 43 43 H 1.09002 * 109.47690 * 299.99798 * 17 15 14 44 44 H 1.09002 * 109.47421 * 60.00275 * 17 15 14 45 45 H 1.09003 * 109.47188 * 58.51284 * 18 15 14 46 46 H 1.08997 * 109.47436 * 178.51282 * 18 15 14 47 47 H 1.09006 * 109.47210 * 305.00305 * 19 18 15 48 48 H 1.09005 * 109.46896 * 64.99800 * 19 18 15 49 49 H 0.96994 * 120.00856 * 180.02562 * 23 22 20 50 50 H 1.08994 * 109.46501 * 181.75724 * 28 14 13 51 51 H 1.08999 * 109.46328 * 301.72925 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1963 0.0000 4 6 3.5808 1.1969 -0.0062 5 6 4.2752 0.0011 -0.0057 6 6 3.5886 -1.1975 0.0002 7 6 2.2011 -1.2009 0.0060 8 8 1.5234 -2.3788 0.0113 9 6 2.2978 -3.5735 -0.1122 10 1 3.1427 -3.3923 -0.7765 11 6 2.8129 -3.9937 1.2672 12 6 3.5898 -5.3065 1.1350 13 6 2.6796 -6.3736 0.5226 14 7 2.2146 -5.9242 -0.7959 15 6 1.4510 -6.9807 -1.4730 16 1 1.1127 -6.6191 -2.4441 17 6 0.2392 -7.3608 -0.6199 18 6 2.3424 -8.2088 -1.6685 19 6 3.5349 -7.8380 -2.5524 20 6 4.3460 -9.0736 -2.8460 21 1 4.0417 -10.0280 -2.4422 22 6 5.4767 -8.9859 -3.6301 23 7 5.8476 -7.8237 -4.1215 24 14 6.4817 -10.5177 -3.9947 25 1 5.8576 -11.6893 -3.3291 26 1 6.5232 -10.7450 -5.4616 27 1 7.8639 -10.3363 -3.4827 28 6 1.4251 -4.6908 -0.6884 29 1 -0.3634 0.0050 1.0276 30 1 -0.3634 0.8874 -0.5182 31 1 -0.3633 -0.8925 -0.5095 32 1 1.6584 2.1316 -0.0004 33 1 4.1194 2.1330 -0.0112 34 1 5.3552 0.0042 -0.0101 35 1 4.1314 -2.1313 0.0003 36 1 1.9694 -4.1360 1.9427 37 1 3.4707 -3.2195 1.6624 38 1 3.9221 -5.6335 2.1201 39 1 4.4558 -5.1537 0.4909 40 1 3.2346 -7.3054 0.4138 41 1 1.8211 -6.5362 1.1742 42 1 -0.3272 -8.1450 -1.1221 43 1 0.5774 -7.7225 0.3512 44 1 -0.3959 -6.4859 -0.4806 45 1 2.7021 -8.5547 -0.6994 46 1 1.7682 -9.0021 -2.1471 47 1 3.1746 -7.4091 -3.4875 48 1 4.1581 -7.1088 -2.0346 49 1 6.6428 -7.7619 -4.6734 50 1 1.0689 -4.4002 -1.6767 51 1 0.5726 -4.8614 -0.0310 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172507417.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:34 Heat of formation + Delta-G solvation = -43.678530 kcal Electronic energy + Delta-G solvation = -27252.949551 eV Core-core repulsion = 23729.968883 eV Total energy + Delta-G solvation = -3522.980669 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.59815 -40.25002 -38.40788 -36.17817 -34.86875 -33.67147 -32.52210 -31.47016 -30.48610 -30.24635 -27.63880 -27.10033 -25.44649 -24.69712 -23.18632 -22.91210 -22.38213 -21.24545 -20.16251 -18.92553 -18.35899 -17.52804 -16.92933 -16.51155 -16.46971 -16.30089 -15.91604 -15.55548 -15.44507 -14.99575 -14.73029 -14.58758 -14.26627 -14.22275 -14.08688 -13.95450 -13.55551 -13.35099 -13.27247 -13.13640 -13.11359 -12.86310 -12.74653 -12.51819 -12.40938 -12.32310 -12.23217 -11.98868 -11.74640 -11.66185 -11.57907 -11.38092 -11.18675 -11.15940 -10.90310 -10.48792 -9.74911 -9.09695 -9.03372 -8.13222 -6.23662 0.38181 0.50278 1.39863 1.40053 1.52998 2.01931 2.43520 2.82135 3.13964 3.19279 3.63323 3.70696 3.86897 3.91475 3.95583 4.01918 4.10623 4.20347 4.25179 4.31356 4.38817 4.42074 4.42633 4.50895 4.59944 4.65764 4.72496 4.74229 4.77719 4.80821 4.84326 4.88984 4.92149 4.98776 5.00303 5.02437 5.09146 5.17019 5.28311 5.33321 5.34060 5.44633 5.46302 5.55386 5.60382 5.61216 5.88773 5.91307 6.02502 6.23499 6.24854 6.35169 6.47436 6.96691 7.44617 8.97980 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.015293 B = 0.003003 C = 0.002711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1830.472596 B = 9320.634652 C =10326.621991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.136 4.136 3 C -0.087 4.087 4 C -0.158 4.158 5 C -0.096 4.096 6 C -0.220 4.220 7 C 0.110 3.890 8 O -0.315 6.315 9 C 0.094 3.906 10 H 0.064 0.936 11 C -0.130 4.130 12 C -0.110 4.110 13 C 0.050 3.950 14 N -0.538 5.538 15 C 0.089 3.911 16 H 0.066 0.934 17 C -0.174 4.174 18 C -0.092 4.092 19 C 0.043 3.957 20 C -0.540 4.540 21 H 0.056 0.944 22 C -0.001 4.001 23 N -0.931 5.931 24 Si 0.959 3.041 25 H -0.262 1.262 26 H -0.280 1.280 27 H -0.279 1.279 28 C 0.070 3.930 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.056 0.944 32 H 0.154 0.846 33 H 0.148 0.852 34 H 0.138 0.862 35 H 0.124 0.876 36 H 0.077 0.923 37 H 0.072 0.928 38 H 0.091 0.909 39 H 0.053 0.947 40 H 0.070 0.930 41 H 0.050 0.950 42 H 0.068 0.932 43 H 0.061 0.939 44 H 0.063 0.937 45 H 0.055 0.945 46 H 0.053 0.947 47 H -0.023 1.023 48 H 0.002 0.998 49 H 0.260 0.740 50 H 0.070 0.930 51 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.139 16.159 13.115 23.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.137 4.137 3 C -0.105 4.105 4 C -0.176 4.176 5 C -0.114 4.114 6 C -0.238 4.238 7 C 0.065 3.935 8 O -0.229 6.229 9 C 0.037 3.963 10 H 0.082 0.918 11 C -0.168 4.168 12 C -0.148 4.148 13 C -0.077 4.077 14 N -0.263 5.263 15 C -0.019 4.019 16 H 0.084 0.916 17 C -0.233 4.233 18 C -0.130 4.130 19 C 0.006 3.994 20 C -0.578 4.578 21 H 0.074 0.926 22 C -0.198 4.198 23 N -0.572 5.572 24 Si 0.784 3.216 25 H -0.186 1.186 26 H -0.206 1.206 27 H -0.205 1.205 28 C -0.058 4.058 29 H 0.091 0.909 30 H 0.101 0.899 31 H 0.075 0.925 32 H 0.172 0.828 33 H 0.166 0.834 34 H 0.156 0.844 35 H 0.142 0.858 36 H 0.096 0.904 37 H 0.091 0.909 38 H 0.110 0.890 39 H 0.072 0.928 40 H 0.088 0.912 41 H 0.068 0.932 42 H 0.087 0.913 43 H 0.080 0.920 44 H 0.082 0.918 45 H 0.073 0.927 46 H 0.072 0.928 47 H -0.005 1.005 48 H 0.021 0.979 49 H 0.069 0.931 50 H 0.088 0.912 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.820 16.293 12.746 22.899 hybrid contribution 0.525 -1.086 -0.276 1.237 sum -9.295 15.207 12.470 21.752 Atomic orbital electron populations 1.20602 0.89515 1.02995 1.02647 1.19639 0.97584 0.90425 1.06003 1.21231 0.94427 0.97201 0.97659 1.21387 0.94507 0.98651 1.03060 1.21239 1.00828 0.91831 0.97544 1.21489 0.93360 1.00205 1.08782 1.19116 0.90856 0.85935 0.97591 1.85980 1.36623 1.12469 1.87804 1.22303 0.93773 0.82585 0.97600 0.91832 1.22039 1.00716 0.97995 0.96012 1.21516 0.97991 0.93889 1.01409 1.22185 0.98244 0.98603 0.88654 1.61847 1.39747 1.03775 1.20948 1.21674 0.92098 0.91183 0.96928 0.91565 1.22370 0.98016 1.02149 1.00726 1.21571 0.96383 0.95566 0.99472 1.18771 0.92859 0.94718 0.93060 1.21832 1.09826 0.95664 1.30514 0.92603 1.25932 0.98950 0.98988 0.95945 1.70131 1.25773 1.25863 1.35442 0.85496 0.78436 0.79795 0.77885 1.18627 1.20605 1.20526 1.21819 0.94386 0.88901 1.00720 0.90856 0.89929 0.92453 0.82828 0.83447 0.84430 0.85820 0.90438 0.90914 0.89009 0.92785 0.91194 0.93206 0.91319 0.91954 0.91848 0.92682 0.92820 1.00471 0.97934 0.93107 0.91169 0.92775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.81 9.79 71.24 0.70 -1.12 16 2 C -0.14 -3.01 5.89 -19.77 -0.12 -3.12 16 3 C -0.09 -1.57 9.70 22.26 0.22 -1.36 16 4 C -0.16 -2.84 10.04 22.28 0.22 -2.61 16 5 C -0.10 -2.04 10.04 22.25 0.22 -1.82 16 6 C -0.22 -5.58 8.26 22.37 0.18 -5.40 16 7 C 0.11 2.89 6.57 22.50 0.15 3.04 16 8 O -0.32 -8.66 8.85 -92.39 -0.82 -9.48 16 9 C 0.09 2.60 2.27 30.65 0.07 2.67 16 10 H 0.06 2.01 6.34 -2.39 -0.02 2.00 16 11 C -0.13 -3.13 5.28 30.67 0.16 -2.97 16 12 C -0.11 -2.88 6.09 30.65 0.19 -2.70 16 13 C 0.05 1.48 4.64 86.33 0.40 1.88 16 14 N -0.54 -17.72 4.04 -871.12 -3.52 -21.24 16 15 C 0.09 2.99 2.39 44.92 0.11 3.10 16 16 H 0.07 2.37 8.09 -2.38 -0.02 2.35 16 17 C -0.17 -4.45 8.50 71.98 0.61 -3.84 16 18 C -0.09 -3.76 4.36 30.59 0.13 -3.63 16 19 C 0.04 2.31 4.76 29.85 0.14 2.45 16 20 C -0.54 -31.26 9.11 25.60 0.23 -31.03 16 21 H 0.06 3.10 7.74 -2.91 -0.02 3.08 16 22 C 0.00 -0.05 5.46 84.65 0.46 0.42 16 23 N -0.93 -58.09 13.29 21.45 0.28 -57.81 16 24 Si 0.96 45.15 29.54 68.60 2.03 47.17 16 25 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 26 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 27 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 28 C 0.07 2.00 4.67 86.33 0.40 2.40 16 29 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.08 1.12 8.09 -2.39 -0.02 1.10 16 31 H 0.06 1.18 7.53 -2.39 -0.02 1.16 16 32 H 0.15 1.80 8.06 -2.91 -0.02 1.78 16 33 H 0.15 1.80 8.06 -2.91 -0.02 1.77 16 34 H 0.14 2.38 8.06 -2.91 -0.02 2.36 16 35 H 0.12 3.25 5.38 -2.91 -0.02 3.24 16 36 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.07 1.68 6.85 -2.39 -0.02 1.66 16 38 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 39 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.07 2.34 5.99 -2.39 -0.01 2.32 16 41 H 0.05 1.26 6.62 -2.39 -0.02 1.25 16 42 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 43 H 0.06 1.52 6.53 -2.39 -0.02 1.50 16 44 H 0.06 1.45 6.64 -2.39 -0.02 1.44 16 45 H 0.05 2.17 6.21 -2.39 -0.01 2.15 16 46 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 47 H -0.02 -1.38 8.14 -2.38 -0.02 -1.40 16 48 H 0.00 0.13 7.80 -2.38 -0.02 0.11 16 49 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 50 H 0.07 2.11 8.08 -2.39 -0.02 2.09 16 51 H 0.05 1.40 6.72 -2.39 -0.02 1.38 16 Total: -1.00 -67.64 388.96 3.35 -64.29 By element: Atomic # 1 Polarization: 19.81 SS G_CDS: 0.89 Total: 20.70 kcal Atomic # 6 Polarization: -48.12 SS G_CDS: 4.49 Total: -43.63 kcal Atomic # 7 Polarization: -75.82 SS G_CDS: -3.23 Total: -79.05 kcal Atomic # 8 Polarization: -8.66 SS G_CDS: -0.82 Total: -9.48 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.17 kcal Total: -67.64 3.35 -64.29 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172507417.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.609 kcal (2) G-P(sol) polarization free energy of solvation -67.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds