Wall clock time and date at job start Tue Mar 31 2020 11:44:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.54377 * 1 3 3 C 1.53378 * 107.37339 * 2 1 4 4 C 1.52771 * 107.69476 * 117.71313 * 2 1 3 5 5 C 1.52915 * 110.17210 * 166.51588 * 4 2 1 6 6 N 1.46803 * 109.28486 * 181.52809 * 5 4 2 7 7 C 1.36929 * 119.99824 * 60.00815 * 6 5 4 8 8 H 1.08005 * 120.00210 * 325.92641 * 7 6 5 9 9 C 1.38815 * 120.00358 * 145.93158 * 7 6 5 10 10 N 1.31621 * 119.99720 * 336.94350 * 9 7 6 11 11 Si 1.86800 * 120.00178 * 156.93765 * 9 7 6 12 12 H 1.48496 * 109.47210 * 60.00427 * 11 9 7 13 13 H 1.48508 * 109.46865 * 180.02562 * 11 9 7 14 14 H 1.48497 * 109.47118 * 300.00039 * 11 9 7 15 15 C 1.46500 * 119.99805 * 240.00288 * 6 5 4 16 16 C 1.50704 * 109.47311 * 85.26423 * 15 6 5 17 17 C 1.38235 * 120.00054 * 266.07707 * 16 15 6 18 18 C 1.38233 * 119.99920 * 179.76281 * 17 16 15 19 19 C 1.38233 * 119.99621 * 0.50923 * 18 17 16 20 20 C 1.38232 * 120.00682 * 359.74315 * 19 18 17 21 21 C 1.38239 * 119.99514 * 86.34557 * 16 15 6 22 22 C 1.52916 * 108.47443 * 300.59707 * 5 4 2 23 23 C 1.52781 * 110.13374 * 59.51195 * 22 5 4 24 24 C 1.53368 * 109.40354 * 76.86083 * 23 22 5 25 25 C 1.54368 * 107.70154 * 193.28701 * 23 22 5 26 26 O 1.40823 * 108.33909 * 240.01518 * 2 1 3 27 27 H 1.09001 * 109.47566 * 59.99863 * 1 2 3 28 28 H 1.09001 * 109.47317 * 299.99812 * 1 2 3 29 29 H 1.09001 * 109.47169 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47223 * 59.99834 * 3 2 1 31 31 H 1.09000 * 109.47588 * 180.02562 * 3 2 1 32 32 H 1.09007 * 109.47629 * 299.99919 * 3 2 1 33 33 H 1.09216 * 109.44922 * 286.86773 * 4 2 1 34 34 H 1.09217 * 109.46112 * 46.14959 * 4 2 1 35 35 H 1.08735 * 110.37156 * 61.64680 * 5 4 2 36 36 H 0.96994 * 120.00377 * 179.97438 * 10 9 7 37 37 H 1.09002 * 109.46943 * 205.26693 * 15 6 5 38 38 H 1.09004 * 109.47429 * 325.26294 * 15 6 5 39 39 H 1.07993 * 119.99459 * 359.97438 * 17 16 15 40 40 H 1.07995 * 119.99944 * 180.23036 * 18 17 16 41 41 H 1.08007 * 120.00132 * 179.72374 * 19 18 17 42 42 H 1.08000 * 120.00440 * 179.97438 * 20 19 18 43 43 H 1.07995 * 120.00285 * 0.02562 * 21 16 15 44 44 H 1.09214 * 109.42079 * 179.86831 * 22 5 4 45 45 H 1.09198 * 109.42921 * 299.13652 * 22 5 4 46 46 H 1.09000 * 109.46977 * 60.00601 * 24 23 22 47 47 H 1.09006 * 109.47015 * 180.02562 * 24 23 22 48 48 H 1.08996 * 109.47535 * 300.00466 * 24 23 22 49 49 H 1.09004 * 109.47368 * 59.99271 * 25 23 22 50 50 H 1.09002 * 109.47524 * 179.97438 * 25 23 22 51 51 H 1.09002 * 109.47377 * 299.99513 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5438 0.0000 0.0000 3 6 2.0017 1.4638 0.0000 4 6 2.0081 -0.6768 1.2885 5 6 3.4981 -1.0095 1.2020 6 7 3.9150 -1.6911 2.4335 7 6 3.3293 -2.8756 2.7923 8 1 2.2873 -3.0521 2.5694 9 6 4.0745 -3.8495 3.4428 10 7 5.3852 -3.8643 3.3234 11 14 3.2172 -5.1391 4.4875 12 1 2.2741 -5.9142 3.6420 13 1 4.2291 -6.0567 5.0702 14 1 2.4671 -4.4712 5.5814 15 6 4.9578 -1.1039 3.2786 16 6 4.3376 -0.1040 4.2202 17 6 4.2945 1.2343 3.8769 18 6 3.7213 2.1507 4.7384 19 6 3.2005 1.7303 5.9480 20 6 3.2483 0.3928 6.2937 21 6 3.8168 -0.5245 5.4297 22 6 3.7182 -1.9413 0.0097 23 6 3.2573 -1.2635 -1.2796 24 6 4.3074 -0.2354 -1.7183 25 6 3.1837 -2.3454 -2.3783 26 8 1.9869 -0.6680 -1.1578 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6198 1.9640 0.8899 31 1 3.0910 1.5038 -0.0005 32 1 1.6199 1.9641 -0.8900 33 1 1.8340 -0.0077 2.1339 34 1 1.4391 -1.5963 1.4420 35 1 4.0828 -0.1002 1.0849 36 1 5.9060 -4.5445 3.7781 37 1 5.4452 -1.8911 3.8539 38 1 5.6950 -0.6032 2.6509 39 1 4.7057 1.5633 2.9340 40 1 3.6842 3.1958 4.4686 41 1 2.7566 2.4470 6.6232 42 1 2.8418 0.0644 7.2388 43 1 3.8548 -1.5694 5.7000 44 1 4.7794 -2.1872 -0.0680 45 1 3.1513 -2.8626 0.1592 46 1 5.2585 -0.7389 -1.8918 47 1 3.9794 0.2493 -2.6379 48 1 4.4305 0.5144 -0.9368 49 1 2.4738 -3.1174 -2.0811 50 1 2.8562 -1.8917 -3.3137 51 1 4.1688 -2.7912 -2.5158 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172659452.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:25 Heat of formation + Delta-G solvation = -12.777852 kcal Electronic energy + Delta-G solvation = -29096.679109 eV Core-core repulsion = 25575.038394 eV Total energy + Delta-G solvation = -3521.640715 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -39.74270 -38.52471 -35.78797 -34.80963 -32.61538 -31.51773 -30.63569 -30.24156 -28.45554 -27.39269 -26.45522 -25.63777 -25.51295 -23.43711 -21.87830 -21.31704 -20.80920 -19.94536 -17.89854 -16.52259 -15.99286 -15.55181 -15.37827 -14.78756 -14.52560 -14.32449 -14.26965 -14.19624 -13.65783 -13.34113 -13.05581 -12.97327 -12.78596 -12.68955 -12.51234 -11.97863 -11.90695 -11.88884 -11.71760 -11.68942 -11.54776 -11.29254 -11.19387 -10.93006 -10.82080 -10.73131 -10.66852 -10.49445 -10.30724 -10.15672 -10.07019 -9.88072 -9.72698 -9.25743 -8.85877 -8.51669 -8.30424 -7.99505 -6.67420 -5.86772 -3.36425 2.01470 2.05254 3.32812 3.39465 3.42239 3.85865 4.36634 4.50117 5.15367 5.20024 5.25372 5.27578 5.31127 5.42833 5.44079 5.46863 5.49448 5.61423 5.84102 5.84812 5.88649 5.90738 5.93404 5.96996 6.00636 6.04114 6.07342 6.12019 6.15481 6.22024 6.26219 6.29867 6.32737 6.41498 6.49009 6.52009 6.55537 6.58962 6.70456 6.77796 6.80831 6.85539 7.05707 7.09178 7.15532 7.22547 7.41934 7.60875 7.72348 7.78045 8.31627 8.43634 9.11458 9.74888 10.31774 11.14922 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.009772 B = 0.006509 C = 0.004722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2864.624229 B = 4300.563222 C = 5928.006765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.134 3.866 3 C -0.168 4.168 4 C -0.149 4.149 5 C 0.181 3.819 6 N -0.569 5.569 7 C -0.247 4.247 8 H 0.061 0.939 9 C 0.012 3.988 10 N -0.884 5.884 11 Si 0.889 3.111 12 H -0.281 1.281 13 H -0.290 1.290 14 H -0.282 1.282 15 C 0.174 3.826 16 C -0.070 4.070 17 C -0.124 4.124 18 C -0.129 4.129 19 C -0.144 4.144 20 C -0.127 4.127 21 C -0.098 4.098 22 C -0.143 4.143 23 C 0.131 3.869 24 C -0.169 4.169 25 C -0.138 4.138 26 O -0.383 6.383 27 H 0.054 0.946 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.056 0.944 32 H 0.053 0.947 33 H 0.063 0.937 34 H 0.069 0.931 35 H 0.050 0.950 36 H 0.256 0.744 37 H 0.108 0.892 38 H 0.030 0.970 39 H 0.108 0.892 40 H 0.108 0.892 41 H 0.107 0.893 42 H 0.109 0.891 43 H 0.119 0.881 44 H 0.067 0.933 45 H 0.074 0.926 46 H 0.061 0.939 47 H 0.053 0.947 48 H 0.055 0.945 49 H 0.058 0.942 50 H 0.053 0.947 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.521 9.254 -4.184 10.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.095 3.905 3 C -0.226 4.226 4 C -0.189 4.189 5 C 0.074 3.926 6 N -0.286 5.286 7 C -0.377 4.377 8 H 0.079 0.921 9 C -0.188 4.188 10 N -0.526 5.526 11 Si 0.718 3.282 12 H -0.207 1.207 13 H -0.216 1.216 14 H -0.209 1.209 15 C 0.048 3.952 16 C -0.073 4.073 17 C -0.143 4.143 18 C -0.147 4.147 19 C -0.163 4.163 20 C -0.146 4.146 21 C -0.117 4.117 22 C -0.182 4.182 23 C 0.092 3.908 24 C -0.226 4.226 25 C -0.196 4.196 26 O -0.303 6.303 27 H 0.073 0.927 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.126 0.874 38 H 0.048 0.952 39 H 0.126 0.874 40 H 0.126 0.874 41 H 0.125 0.875 42 H 0.127 0.873 43 H 0.137 0.863 44 H 0.086 0.914 45 H 0.093 0.907 46 H 0.080 0.920 47 H 0.072 0.928 48 H 0.074 0.926 49 H 0.077 0.923 50 H 0.072 0.928 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.471 9.070 -4.272 10.609 hybrid contribution -0.299 -0.610 0.955 1.172 sum -3.770 8.460 -3.317 9.838 Atomic orbital electron populations 1.22159 0.93940 1.02216 1.01341 1.21193 0.93347 0.90489 0.85509 1.22514 1.01732 0.96951 1.01393 1.22587 0.99715 1.00942 0.95614 1.20206 0.92182 0.93456 0.86709 1.43880 1.44421 1.21493 1.18825 1.18894 0.92834 0.91298 1.34655 0.92136 1.25016 0.95177 0.96777 1.01842 1.69986 1.04797 1.34888 1.42957 0.86582 0.78985 0.81424 0.81182 1.20742 1.21629 1.20884 1.20083 0.89701 0.93873 0.91565 1.21281 0.96436 0.94662 0.94969 1.21009 1.00885 0.93406 0.99002 1.20958 1.00040 0.98689 0.94999 1.20875 1.02466 0.95731 0.97230 1.21085 1.00466 0.93545 0.99455 1.21102 0.97459 0.99302 0.93853 1.22522 1.02126 1.00394 0.93182 1.21282 0.82465 0.91484 0.95614 1.22519 0.99077 0.99882 1.01156 1.22147 1.01898 0.97825 0.97690 1.86105 1.33490 1.72366 1.38366 0.92698 0.91733 0.92310 0.92144 0.92531 0.92796 0.91814 0.91245 0.93223 0.93446 0.87422 0.95200 0.87389 0.87424 0.87454 0.87277 0.86344 0.91415 0.90747 0.92028 0.92805 0.92640 0.92302 0.92802 0.91591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 8.58 37.88 0.33 -1.63 16 2 C 0.13 2.13 1.10 -89.82 -0.10 2.03 16 3 C -0.17 -2.37 8.43 37.35 0.31 -2.06 16 4 C -0.15 -2.74 4.02 -26.89 -0.11 -2.85 16 5 C 0.18 3.58 2.55 -67.85 -0.17 3.41 16 6 N -0.57 -12.93 2.38 -167.00 -0.40 -13.32 16 7 C -0.25 -6.23 8.13 -15.06 -0.12 -6.35 16 8 H 0.06 1.57 6.78 -52.48 -0.36 1.22 16 9 C 0.01 0.31 4.90 -17.43 -0.09 0.22 16 10 N -0.88 -23.80 11.39 55.49 0.63 -23.16 16 11 Si 0.89 20.77 29.61 -169.99 -5.03 15.74 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 13 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 14 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 15 C 0.17 3.86 5.32 -5.19 -0.03 3.83 16 16 C -0.07 -1.41 5.46 -104.62 -0.57 -1.98 16 17 C -0.12 -2.18 9.69 -39.58 -0.38 -2.56 16 18 C -0.13 -2.03 10.05 -39.59 -0.40 -2.42 16 19 C -0.14 -2.26 10.05 -39.59 -0.40 -2.65 16 20 C -0.13 -2.17 10.05 -39.58 -0.40 -2.57 16 21 C -0.10 -1.94 9.72 -39.58 -0.38 -2.33 16 22 C -0.14 -2.75 4.00 -26.89 -0.11 -2.86 16 23 C 0.13 2.13 1.10 -89.82 -0.10 2.03 16 24 C -0.17 -2.43 8.40 37.35 0.31 -2.12 16 25 C -0.14 -2.01 8.59 37.87 0.33 -1.68 16 26 O -0.38 -6.44 8.80 -33.94 -0.30 -6.74 16 27 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.06 0.81 8.08 -51.93 -0.42 0.39 16 31 H 0.06 0.82 5.47 -51.93 -0.28 0.53 16 32 H 0.05 0.70 8.14 -51.92 -0.42 0.28 16 33 H 0.06 1.22 8.00 -51.81 -0.41 0.80 16 34 H 0.07 1.42 6.78 -51.81 -0.35 1.07 16 35 H 0.05 0.96 6.12 -52.08 -0.32 0.64 16 36 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 37 H 0.11 2.71 5.34 -51.93 -0.28 2.43 16 38 H 0.03 0.64 7.93 -51.93 -0.41 0.23 16 39 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 40 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 41 H 0.11 1.39 8.06 -52.48 -0.42 0.96 16 42 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 43 H 0.12 2.52 8.06 -52.49 -0.42 2.09 16 44 H 0.07 1.39 8.05 -51.81 -0.42 0.97 16 45 H 0.07 1.61 7.43 -51.82 -0.39 1.23 16 46 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 47 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 48 H 0.05 0.82 5.40 -51.93 -0.28 0.54 16 49 H 0.06 0.88 8.11 -51.93 -0.42 0.46 16 50 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 51 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 390.88 15.07 5.89 5.89 Total: -1.00 -26.39 390.88 -10.25 -36.64 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: -8.97 Total: 7.51 kcal Atomic # 6 Polarization: -20.47 SS G_CDS: -2.08 Total: -22.55 kcal Atomic # 7 Polarization: -36.72 SS G_CDS: 0.23 Total: -36.49 kcal Atomic # 8 Polarization: -6.44 SS G_CDS: -0.30 Total: -6.74 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.03 Total: 15.74 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -26.39 -10.25 -36.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172659452.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.860 kcal (2) G-P(sol) polarization free energy of solvation -26.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds