Wall clock time and date at job start Tue Mar 31 2020 11:44:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.54377 * 1 3 3 C 1.53378 * 107.37339 * 2 1 4 4 C 1.52771 * 107.69476 * 117.71313 * 2 1 3 5 5 C 1.52915 * 110.17210 * 166.51588 * 4 2 1 6 6 N 1.46803 * 109.28486 * 181.52809 * 5 4 2 7 7 C 1.36929 * 119.99824 * 60.00815 * 6 5 4 8 8 H 1.08005 * 120.00210 * 325.92641 * 7 6 5 9 9 C 1.38815 * 120.00358 * 145.93158 * 7 6 5 10 10 N 1.31621 * 119.99720 * 336.94350 * 9 7 6 11 11 Si 1.86800 * 120.00178 * 156.93765 * 9 7 6 12 12 H 1.48496 * 109.47210 * 60.00427 * 11 9 7 13 13 H 1.48508 * 109.46865 * 180.02562 * 11 9 7 14 14 H 1.48497 * 109.47118 * 300.00039 * 11 9 7 15 15 C 1.46500 * 119.99805 * 240.00288 * 6 5 4 16 16 C 1.50704 * 109.47311 * 85.26423 * 15 6 5 17 17 C 1.38235 * 120.00054 * 266.07707 * 16 15 6 18 18 C 1.38233 * 119.99920 * 179.76281 * 17 16 15 19 19 C 1.38233 * 119.99621 * 0.50923 * 18 17 16 20 20 C 1.38232 * 120.00682 * 359.74315 * 19 18 17 21 21 C 1.38239 * 119.99514 * 86.34557 * 16 15 6 22 22 C 1.52916 * 108.47443 * 300.59707 * 5 4 2 23 23 C 1.52781 * 110.13374 * 59.51195 * 22 5 4 24 24 C 1.53368 * 109.40354 * 76.86083 * 23 22 5 25 25 C 1.54368 * 107.70154 * 193.28701 * 23 22 5 26 26 O 1.40823 * 108.33909 * 240.01518 * 2 1 3 27 27 H 1.09001 * 109.47566 * 59.99863 * 1 2 3 28 28 H 1.09001 * 109.47317 * 299.99812 * 1 2 3 29 29 H 1.09001 * 109.47169 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47223 * 59.99834 * 3 2 1 31 31 H 1.09000 * 109.47588 * 180.02562 * 3 2 1 32 32 H 1.09007 * 109.47629 * 299.99919 * 3 2 1 33 33 H 1.09216 * 109.44922 * 286.86773 * 4 2 1 34 34 H 1.09217 * 109.46112 * 46.14959 * 4 2 1 35 35 H 1.08735 * 110.37156 * 61.64680 * 5 4 2 36 36 H 0.96994 * 120.00377 * 179.97438 * 10 9 7 37 37 H 1.09002 * 109.46943 * 205.26693 * 15 6 5 38 38 H 1.09004 * 109.47429 * 325.26294 * 15 6 5 39 39 H 1.07993 * 119.99459 * 359.97438 * 17 16 15 40 40 H 1.07995 * 119.99944 * 180.23036 * 18 17 16 41 41 H 1.08007 * 120.00132 * 179.72374 * 19 18 17 42 42 H 1.08000 * 120.00440 * 179.97438 * 20 19 18 43 43 H 1.07995 * 120.00285 * 0.02562 * 21 16 15 44 44 H 1.09214 * 109.42079 * 179.86831 * 22 5 4 45 45 H 1.09198 * 109.42921 * 299.13652 * 22 5 4 46 46 H 1.09000 * 109.46977 * 60.00601 * 24 23 22 47 47 H 1.09006 * 109.47015 * 180.02562 * 24 23 22 48 48 H 1.08996 * 109.47535 * 300.00466 * 24 23 22 49 49 H 1.09004 * 109.47368 * 59.99271 * 25 23 22 50 50 H 1.09002 * 109.47524 * 179.97438 * 25 23 22 51 51 H 1.09002 * 109.47377 * 299.99513 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5438 0.0000 0.0000 3 6 2.0017 1.4638 0.0000 4 6 2.0081 -0.6768 1.2885 5 6 3.4981 -1.0095 1.2020 6 7 3.9150 -1.6911 2.4335 7 6 3.3293 -2.8756 2.7923 8 1 2.2873 -3.0521 2.5694 9 6 4.0745 -3.8495 3.4428 10 7 5.3852 -3.8643 3.3234 11 14 3.2172 -5.1391 4.4875 12 1 2.2741 -5.9142 3.6420 13 1 4.2291 -6.0567 5.0702 14 1 2.4671 -4.4712 5.5814 15 6 4.9578 -1.1039 3.2786 16 6 4.3376 -0.1040 4.2202 17 6 4.2945 1.2343 3.8769 18 6 3.7213 2.1507 4.7384 19 6 3.2005 1.7303 5.9480 20 6 3.2483 0.3928 6.2937 21 6 3.8168 -0.5245 5.4297 22 6 3.7182 -1.9413 0.0097 23 6 3.2573 -1.2635 -1.2796 24 6 4.3074 -0.2354 -1.7183 25 6 3.1837 -2.3454 -2.3783 26 8 1.9869 -0.6680 -1.1578 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6198 1.9640 0.8899 31 1 3.0910 1.5038 -0.0005 32 1 1.6199 1.9641 -0.8900 33 1 1.8340 -0.0077 2.1339 34 1 1.4391 -1.5963 1.4420 35 1 4.0828 -0.1002 1.0849 36 1 5.9060 -4.5445 3.7781 37 1 5.4452 -1.8911 3.8539 38 1 5.6950 -0.6032 2.6509 39 1 4.7057 1.5633 2.9340 40 1 3.6842 3.1958 4.4686 41 1 2.7566 2.4470 6.6232 42 1 2.8418 0.0644 7.2388 43 1 3.8548 -1.5694 5.7000 44 1 4.7794 -2.1872 -0.0680 45 1 3.1513 -2.8626 0.1592 46 1 5.2585 -0.7389 -1.8918 47 1 3.9794 0.2493 -2.6379 48 1 4.4305 0.5144 -0.9368 49 1 2.4738 -3.1174 -2.0811 50 1 2.8562 -1.8917 -3.3137 51 1 4.1688 -2.7912 -2.5158 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172659452.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:24 Heat of formation + Delta-G solvation = -23.076599 kcal Electronic energy + Delta-G solvation = -29097.125696 eV Core-core repulsion = 25575.038394 eV Total energy + Delta-G solvation = -3522.087302 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.14139 -39.92844 -37.45892 -36.07982 -34.26789 -33.20458 -32.01489 -31.61082 -30.02513 -28.55470 -27.59561 -27.37871 -27.03838 -25.11761 -23.26546 -22.59230 -22.26854 -21.61393 -19.39343 -18.22019 -17.44896 -17.00333 -16.82802 -16.38875 -16.04722 -15.89908 -15.78361 -15.52340 -15.04654 -14.99234 -14.55870 -14.23625 -14.13719 -14.00953 -13.89747 -13.44475 -13.14782 -13.12095 -13.04066 -12.90280 -12.85333 -12.77850 -12.72063 -12.62574 -12.52366 -12.38259 -12.19178 -12.06894 -11.78401 -11.65149 -11.58398 -11.43702 -11.39140 -10.71483 -10.47663 -10.18056 -9.66944 -9.42721 -8.57799 -7.84433 -5.36722 0.64370 0.66936 1.40448 1.43828 1.48877 2.47388 2.59608 3.01990 3.25665 3.64502 3.90878 3.94792 3.97635 4.12812 4.13565 4.18939 4.25086 4.32821 4.41023 4.46007 4.51335 4.56305 4.57041 4.67388 4.72512 4.81241 4.82529 4.84287 4.92185 4.93951 4.96359 4.98038 5.01234 5.06731 5.16027 5.21052 5.26912 5.27802 5.31898 5.32536 5.46356 5.47199 5.50186 5.60174 5.63134 5.71483 5.72871 5.78794 6.05285 6.30241 6.47778 7.00379 7.16257 7.86292 8.38201 9.13484 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.009772 B = 0.006509 C = 0.004722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2864.624229 B = 4300.563222 C = 5928.006765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.130 3.870 3 C -0.162 4.162 4 C -0.134 4.134 5 C 0.182 3.818 6 N -0.579 5.579 7 C -0.240 4.240 8 H 0.047 0.953 9 C -0.029 4.029 10 N -0.911 5.911 11 Si 0.936 3.064 12 H -0.280 1.280 13 H -0.293 1.293 14 H -0.282 1.282 15 C 0.180 3.820 16 C -0.090 4.090 17 C -0.128 4.128 18 C -0.120 4.120 19 C -0.135 4.135 20 C -0.130 4.130 21 C -0.124 4.124 22 C -0.132 4.132 23 C 0.131 3.869 24 C -0.163 4.163 25 C -0.136 4.136 26 O -0.389 6.389 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.046 0.954 30 H 0.069 0.931 31 H 0.051 0.949 32 H 0.070 0.930 33 H 0.057 0.943 34 H 0.040 0.960 35 H 0.057 0.943 36 H 0.250 0.750 37 H 0.074 0.926 38 H 0.027 0.973 39 H 0.118 0.882 40 H 0.146 0.854 41 H 0.146 0.854 42 H 0.129 0.871 43 H 0.088 0.912 44 H 0.048 0.952 45 H 0.040 0.960 46 H 0.066 0.934 47 H 0.072 0.928 48 H 0.051 0.949 49 H 0.045 0.955 50 H 0.073 0.927 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.853 12.559 -4.670 14.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.091 3.909 3 C -0.219 4.219 4 C -0.174 4.174 5 C 0.076 3.924 6 N -0.298 5.298 7 C -0.371 4.371 8 H 0.065 0.935 9 C -0.227 4.227 10 N -0.555 5.555 11 Si 0.766 3.234 12 H -0.206 1.206 13 H -0.219 1.219 14 H -0.208 1.208 15 C 0.054 3.946 16 C -0.093 4.093 17 C -0.147 4.147 18 C -0.138 4.138 19 C -0.153 4.153 20 C -0.148 4.148 21 C -0.143 4.143 22 C -0.172 4.172 23 C 0.092 3.908 24 C -0.220 4.220 25 C -0.193 4.193 26 O -0.309 6.309 27 H 0.091 0.909 28 H 0.095 0.905 29 H 0.065 0.935 30 H 0.088 0.912 31 H 0.070 0.930 32 H 0.089 0.911 33 H 0.076 0.924 34 H 0.058 0.942 35 H 0.075 0.925 36 H 0.059 0.941 37 H 0.092 0.908 38 H 0.046 0.954 39 H 0.136 0.864 40 H 0.163 0.837 41 H 0.164 0.836 42 H 0.147 0.853 43 H 0.106 0.894 44 H 0.066 0.934 45 H 0.059 0.941 46 H 0.085 0.915 47 H 0.091 0.909 48 H 0.070 0.930 49 H 0.065 0.935 50 H 0.092 0.908 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.819 12.392 -4.761 14.123 hybrid contribution 0.104 -1.556 1.141 1.932 sum -4.715 10.836 -3.620 12.359 Atomic orbital electron populations 1.22150 0.92335 1.01979 1.02845 1.21327 0.94636 0.91330 0.83642 1.22444 1.01456 0.95270 1.02741 1.22420 0.98029 0.99671 0.97282 1.20300 0.93182 0.93345 0.85602 1.44031 1.44210 1.21255 1.20294 1.18885 0.92186 0.92110 1.33878 0.93513 1.25489 0.95604 0.98430 1.03131 1.70093 1.05667 1.35613 1.44128 0.85822 0.77996 0.79684 0.79941 1.20632 1.21886 1.20849 1.19839 0.89631 0.93526 0.91587 1.20994 0.97910 0.95434 0.94933 1.21127 1.01092 0.92459 0.99976 1.21367 0.98086 1.00062 0.94249 1.21324 1.00921 0.95443 0.97579 1.21320 0.99753 0.94031 0.99650 1.20996 0.99679 0.98625 0.95034 1.22394 1.00277 0.99266 0.95261 1.21311 0.82982 0.92421 0.94123 1.22450 0.98562 0.99179 1.01809 1.22140 1.02177 0.97115 0.97869 1.86108 1.33659 1.72585 1.38542 0.90889 0.90489 0.93499 0.91160 0.93037 0.91063 0.92412 0.94155 0.92527 0.94055 0.90784 0.95445 0.86368 0.83672 0.83621 0.85284 0.89399 0.93367 0.94124 0.91496 0.90867 0.92985 0.93537 0.90771 0.90825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.54 8.58 72.45 0.62 -2.92 16 2 C 0.13 3.93 1.10 -10.28 -0.01 3.92 16 3 C -0.16 -4.07 8.43 72.11 0.61 -3.47 16 4 C -0.13 -5.00 4.02 30.49 0.12 -4.87 16 5 C 0.18 7.36 2.55 44.88 0.11 7.48 16 6 N -0.58 -27.65 2.38 -682.27 -1.63 -29.27 16 7 C -0.24 -12.77 8.13 84.04 0.68 -12.09 16 8 H 0.05 2.59 6.78 -2.91 -0.02 2.57 16 9 C -0.03 -1.59 4.90 84.86 0.42 -1.18 16 10 N -0.91 -51.86 11.39 21.65 0.25 -51.62 16 11 Si 0.94 44.65 29.61 68.60 2.03 46.68 16 12 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 13 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 14 H -0.28 -13.28 7.11 99.48 0.71 -12.58 16 15 C 0.18 8.41 5.32 85.63 0.46 8.87 16 16 C -0.09 -3.66 5.46 -19.86 -0.11 -3.77 16 17 C -0.13 -4.28 9.69 22.27 0.22 -4.06 16 18 C -0.12 -3.30 10.05 22.27 0.22 -3.08 16 19 C -0.13 -3.67 10.05 22.27 0.22 -3.44 16 20 C -0.13 -4.21 10.05 22.27 0.22 -3.98 16 21 C -0.12 -5.04 9.72 22.27 0.22 -4.82 16 22 C -0.13 -5.30 4.00 30.49 0.12 -5.18 16 23 C 0.13 4.18 1.10 -10.28 -0.01 4.16 16 24 C -0.16 -4.38 8.40 72.11 0.61 -3.78 16 25 C -0.14 -3.83 8.59 72.45 0.62 -3.21 16 26 O -0.39 -12.51 8.80 -144.35 -1.27 -13.78 16 27 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.07 1.63 8.08 -2.39 -0.02 1.61 16 31 H 0.05 1.35 5.47 -2.39 -0.01 1.33 16 32 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 33 H 0.06 2.19 8.00 -2.27 -0.02 2.17 16 34 H 0.04 1.71 6.78 -2.27 -0.02 1.69 16 35 H 0.06 2.21 6.12 -2.53 -0.02 2.19 16 36 H 0.25 13.96 8.31 -92.71 -0.77 13.19 16 37 H 0.07 4.00 5.34 -2.39 -0.01 3.99 16 38 H 0.03 1.24 7.93 -2.38 -0.02 1.22 16 39 H 0.12 3.65 8.06 -2.91 -0.02 3.63 16 40 H 0.15 2.96 8.06 -2.91 -0.02 2.94 16 41 H 0.15 2.92 8.06 -2.91 -0.02 2.89 16 42 H 0.13 3.58 8.06 -2.91 -0.02 3.56 16 43 H 0.09 4.00 8.06 -2.91 -0.02 3.98 16 44 H 0.05 2.07 8.05 -2.27 -0.02 2.05 16 45 H 0.04 1.87 7.43 -2.28 -0.02 1.85 16 46 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 47 H 0.07 1.71 8.14 -2.38 -0.02 1.69 16 48 H 0.05 1.43 5.40 -2.39 -0.01 1.42 16 49 H 0.05 1.40 8.11 -2.38 -0.02 1.38 16 50 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 51 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -60.32 390.88 5.60 -54.72 By element: Atomic # 1 Polarization: 27.80 SS G_CDS: 0.88 Total: 28.68 kcal Atomic # 6 Polarization: -40.75 SS G_CDS: 5.34 Total: -35.41 kcal Atomic # 7 Polarization: -79.51 SS G_CDS: -1.38 Total: -80.89 kcal Atomic # 8 Polarization: -12.51 SS G_CDS: -1.27 Total: -13.78 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -60.32 5.60 -54.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172659452.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.640 kcal (2) G-P(sol) polarization free energy of solvation -60.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds