Wall clock time and date at job start Tue Mar 31 2020 11:40:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38163 * 120.02715 * 2 1 4 4 C 1.38243 * 120.05438 * 179.97438 * 3 2 1 5 5 C 1.38289 * 120.11362 * 359.97438 * 4 3 2 6 6 C 1.38125 * 120.05159 * 0.02562 * 5 4 3 7 7 C 1.38708 * 120.02785 * 179.97438 * 2 1 3 8 8 O 1.35899 * 120.05461 * 359.97438 * 7 2 1 9 9 C 1.42903 * 116.99930 * 180.02562 * 8 7 2 10 10 C 1.53002 * 109.47006 * 180.02562 * 9 8 7 11 11 C 1.53004 * 109.46786 * 179.97438 * 10 9 8 12 12 N 1.46896 * 109.47023 * 180.02562 * 11 10 9 13 13 C 1.46898 * 111.00214 * 180.02562 * 12 11 10 14 14 C 1.52994 * 109.47257 * 275.00097 * 13 12 11 15 15 C 1.52997 * 109.47512 * 180.02562 * 14 13 12 16 16 C 1.52994 * 109.47397 * 59.99423 * 15 14 13 17 17 C 1.50699 * 109.47461 * 180.02562 * 16 15 14 18 18 H 1.07994 * 120.00271 * 119.99858 * 17 16 15 19 19 C 1.37887 * 120.00157 * 300.00463 * 17 16 15 20 20 N 1.31511 * 119.99543 * 359.97438 * 19 17 16 21 21 Si 1.86790 * 120.00060 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47066 * 90.00395 * 21 19 17 23 23 H 1.48504 * 109.46967 * 209.99895 * 21 19 17 24 24 H 1.48494 * 109.47372 * 329.99732 * 21 19 17 25 25 C 1.53004 * 109.47297 * 300.00603 * 16 15 14 26 26 C 1.52992 * 109.47042 * 59.99768 * 25 16 15 27 27 H 1.08998 * 109.47128 * 270.02582 * 1 2 3 28 28 H 1.08999 * 109.46873 * 30.02607 * 1 2 3 29 29 H 1.09000 * 109.47139 * 150.02308 * 1 2 3 30 30 H 1.08001 * 119.97024 * 359.97438 * 3 2 1 31 31 H 1.08004 * 119.94070 * 180.02562 * 4 3 2 32 32 H 1.07993 * 119.96940 * 180.28495 * 5 4 3 33 33 H 1.08000 * 120.02364 * 180.02562 * 6 5 4 34 34 H 1.08998 * 109.47294 * 300.00489 * 9 8 7 35 35 H 1.08995 * 109.47056 * 60.00501 * 9 8 7 36 36 H 1.08993 * 109.47487 * 299.99875 * 10 9 8 37 37 H 1.09003 * 109.46669 * 60.00618 * 10 9 8 38 38 H 1.08998 * 109.47491 * 300.00452 * 11 10 9 39 39 H 1.09003 * 109.46925 * 60.00881 * 11 10 9 40 40 H 1.00900 * 111.00546 * 56.04852 * 12 11 10 41 41 H 1.09002 * 109.47248 * 35.00016 * 13 12 11 42 42 H 1.09007 * 109.46885 * 299.99640 * 14 13 12 43 43 H 1.08998 * 109.47452 * 59.99730 * 14 13 12 44 44 H 1.09007 * 109.46583 * 299.99618 * 15 14 13 45 45 H 1.09001 * 109.47593 * 180.02562 * 15 14 13 46 46 H 1.09007 * 109.47094 * 60.00508 * 16 15 14 47 47 H 0.96996 * 120.00026 * 179.97438 * 20 19 17 48 48 H 1.08997 * 109.46586 * 299.99640 * 25 16 15 49 49 H 1.09001 * 109.46660 * 180.02562 * 25 16 15 50 50 H 1.09001 * 109.47246 * 179.97438 * 26 25 16 51 51 H 1.09002 * 109.47433 * 59.99993 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1985 1.1962 0.0000 4 6 3.5809 1.1969 0.0005 5 6 4.2753 0.0009 0.0016 6 6 3.5887 -1.1976 0.0016 7 6 2.2012 -1.2009 0.0005 8 8 1.5234 -2.3788 0.0016 9 6 2.3034 -3.5762 0.0027 10 6 1.3732 -4.7909 0.0031 11 6 2.2084 -6.0728 0.0036 12 7 1.3153 -7.2391 0.0034 13 6 2.0840 -8.4909 0.0045 14 6 2.4591 -8.8603 -1.4320 15 6 3.2592 -10.1644 -1.4310 16 6 2.4112 -11.2826 -0.8217 17 6 3.1994 -12.5670 -0.8202 18 1 3.4114 -13.0693 0.1120 19 6 3.6502 -13.1007 -2.0089 20 7 3.3917 -12.4892 -3.1441 21 14 4.6278 -14.6923 -2.0069 22 1 3.6986 -15.8442 -2.1292 23 1 5.5723 -14.6945 -3.1529 24 1 5.3899 -14.8036 -0.7373 25 6 2.0360 -10.9132 0.6149 26 6 1.2359 -9.6092 0.6138 27 1 -0.3633 0.0005 1.0276 28 1 -0.3633 0.8897 -0.5142 29 1 -0.3633 -0.8902 -0.5135 30 1 1.6584 2.1315 -0.0004 31 1 4.1195 2.1330 0.0010 32 1 5.3552 0.0042 0.0067 33 1 4.1314 -2.1313 0.0029 34 1 2.9324 -3.6009 -0.8872 35 1 2.9322 -3.5993 0.8927 36 1 0.7440 -4.7664 0.8928 37 1 0.7447 -4.7675 -0.8872 38 1 2.8373 -6.0971 -0.8863 39 1 2.8371 -6.0965 0.8937 40 1 0.6780 -7.2065 -0.7782 41 1 2.9910 -8.3598 0.5946 42 1 1.5520 -8.9915 -2.0221 43 1 3.0629 -8.0635 -1.8663 44 1 4.1663 -10.0336 -0.8408 45 1 3.5268 -10.4273 -2.4544 46 1 1.5041 -11.4134 -1.4119 47 1 3.7090 -12.8644 -3.9804 48 1 2.9431 -10.7825 1.2050 49 1 1.4322 -11.7101 1.0490 50 1 0.9683 -9.3462 1.6372 51 1 0.3289 -9.7399 0.0236 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173326472.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:36 Heat of formation + Delta-G solvation = -62.831265 kcal Electronic energy + Delta-G solvation = -25564.793172 eV Core-core repulsion = 22040.981978 eV Total energy + Delta-G solvation = -3523.811194 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -41.18294 -39.82332 -38.55060 -36.79921 -34.70312 -33.75627 -32.80651 -31.31734 -30.89133 -29.75320 -27.67221 -26.79035 -25.36704 -23.37552 -23.07828 -22.65634 -22.17066 -21.78807 -20.44602 -18.97023 -18.39043 -17.38035 -17.06468 -16.78258 -16.55009 -16.35944 -15.88771 -15.49157 -15.29060 -14.88964 -14.80051 -14.49095 -14.33489 -14.16883 -14.01836 -13.93431 -13.64972 -13.16211 -13.11681 -13.00146 -12.90854 -12.78788 -12.58290 -12.46730 -12.34004 -12.23335 -12.13775 -11.95019 -11.78197 -11.73540 -11.66316 -11.53959 -11.18449 -10.77907 -10.57477 -10.37466 -9.77006 -9.26709 -9.06784 -8.07215 -6.21228 0.37529 0.49662 1.39837 1.40697 1.50659 2.14108 2.43213 2.81538 3.18294 3.26511 3.84503 3.87738 3.90390 3.95212 4.09070 4.10621 4.20616 4.22337 4.34038 4.37368 4.42169 4.48499 4.53152 4.61048 4.67949 4.69195 4.69466 4.79343 4.81003 4.82891 4.85593 4.95715 4.98530 5.07378 5.13992 5.19389 5.25510 5.32511 5.34299 5.41012 5.42434 5.47750 5.53526 5.60974 5.61298 5.68896 5.90109 6.04779 6.13007 6.21491 6.42146 6.45420 6.49905 6.91935 7.46661 8.96158 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.028168 B = 0.001788 C = 0.001730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.808129 B =15658.076027 C =16185.452877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.139 4.139 3 C -0.090 4.090 4 C -0.160 4.160 5 C -0.095 4.095 6 C -0.219 4.219 7 C 0.106 3.894 8 O -0.326 6.326 9 C 0.063 3.937 10 C -0.104 4.104 11 C 0.064 3.936 12 N -0.684 5.684 13 C 0.103 3.897 14 C -0.132 4.132 15 C -0.098 4.098 16 C 0.044 3.956 17 C -0.534 4.534 18 H 0.050 0.950 19 C 0.010 3.990 20 N -0.917 5.917 21 Si 0.951 3.049 22 H -0.277 1.277 23 H -0.284 1.284 24 H -0.269 1.269 25 C -0.102 4.102 26 C -0.093 4.093 27 H 0.070 0.930 28 H 0.080 0.920 29 H 0.058 0.942 30 H 0.150 0.850 31 H 0.146 0.854 32 H 0.143 0.857 33 H 0.135 0.865 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.078 0.922 37 H 0.071 0.929 38 H 0.032 0.968 39 H 0.077 0.923 40 H 0.343 0.657 41 H 0.071 0.929 42 H 0.047 0.953 43 H 0.052 0.948 44 H 0.026 0.974 45 H 0.055 0.945 46 H -0.009 1.009 47 H 0.259 0.741 48 H 0.047 0.953 49 H 0.045 0.955 50 H 0.071 0.929 51 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.923 27.996 6.603 28.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.139 4.139 3 C -0.107 4.107 4 C -0.178 4.178 5 C -0.113 4.113 6 C -0.238 4.238 7 C 0.061 3.939 8 O -0.240 6.240 9 C -0.013 4.013 10 C -0.142 4.142 11 C -0.065 4.065 12 N -0.313 5.313 13 C -0.007 4.007 14 C -0.171 4.171 15 C -0.137 4.137 16 C 0.026 3.974 17 C -0.573 4.573 18 H 0.069 0.931 19 C -0.188 4.188 20 N -0.557 5.557 21 Si 0.777 3.223 22 H -0.202 1.202 23 H -0.210 1.210 24 H -0.193 1.193 25 C -0.140 4.140 26 C -0.131 4.131 27 H 0.089 0.911 28 H 0.099 0.901 29 H 0.077 0.923 30 H 0.168 0.832 31 H 0.164 0.836 32 H 0.160 0.840 33 H 0.152 0.848 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.097 0.903 37 H 0.089 0.911 38 H 0.050 0.950 39 H 0.095 0.905 40 H 0.161 0.839 41 H 0.090 0.910 42 H 0.065 0.935 43 H 0.071 0.929 44 H 0.045 0.955 45 H 0.073 0.927 46 H 0.009 0.991 47 H 0.068 0.932 48 H 0.066 0.934 49 H 0.064 0.936 50 H 0.090 0.910 51 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -2.197 27.947 7.115 28.922 hybrid contribution 1.189 -1.440 -1.382 2.324 sum -1.007 26.507 5.733 27.139 Atomic orbital electron populations 1.20609 0.89800 1.02986 1.02556 1.19642 0.97479 0.90726 1.06092 1.21223 0.94607 0.97161 0.97759 1.21402 0.94379 0.98942 1.03106 1.21273 1.00983 0.91737 0.97306 1.21500 0.92899 1.00557 1.08796 1.19138 0.91082 0.85901 0.97761 1.86006 1.36616 1.12713 1.88660 1.22788 0.94266 0.82117 1.02089 1.21333 0.98152 0.90731 1.03969 1.21814 0.94610 0.89015 1.01059 1.60604 1.19714 1.00974 1.50053 1.21404 0.95764 0.89029 0.94503 1.22155 0.99653 0.97614 0.97716 1.21336 0.97110 0.93684 1.01549 1.18640 0.93801 0.92945 0.92028 1.21663 1.34479 1.08489 0.92632 0.93148 1.25745 0.97275 1.00319 0.95443 1.70020 1.47398 1.40319 0.97947 0.85662 0.78681 0.80290 0.77668 1.20246 1.20966 1.19326 1.21501 0.98657 0.96210 0.97654 1.21396 0.97730 0.93337 1.00667 0.91112 0.90073 0.92326 0.83245 0.83622 0.83958 0.84755 0.91579 0.91098 0.90335 0.91069 0.94968 0.90501 0.83869 0.91042 0.93450 0.92918 0.95522 0.92681 0.99075 0.93200 0.93409 0.93592 0.91026 0.93090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.57 9.79 71.24 0.70 -0.87 16 2 C -0.14 -2.55 5.89 -19.77 -0.12 -2.66 16 3 C -0.09 -1.30 9.70 22.25 0.22 -1.08 16 4 C -0.16 -2.17 10.04 22.28 0.22 -1.94 16 5 C -0.10 -1.43 10.04 22.25 0.22 -1.21 16 6 C -0.22 -3.97 9.04 22.36 0.20 -3.76 16 7 C 0.11 2.20 6.66 22.50 0.15 2.35 16 8 O -0.33 -7.05 9.18 -92.41 -0.85 -7.89 16 9 C 0.06 1.12 4.74 71.98 0.34 1.46 16 10 C -0.10 -1.93 5.84 30.60 0.18 -1.75 16 11 C 0.06 1.36 5.48 86.31 0.47 1.83 16 12 N -0.68 -17.43 6.25 -491.58 -3.07 -20.50 16 13 C 0.10 3.22 2.47 44.91 0.11 3.33 16 14 C -0.13 -4.85 5.17 30.59 0.16 -4.69 16 15 C -0.10 -4.60 4.98 30.59 0.15 -4.45 16 16 C 0.04 2.22 2.10 -11.54 -0.02 2.20 16 17 C -0.53 -29.83 8.56 25.60 0.22 -29.61 16 18 H 0.05 2.77 7.74 -2.91 -0.02 2.75 16 19 C 0.01 0.58 5.30 84.66 0.45 1.03 16 20 N -0.92 -53.48 11.32 21.45 0.24 -53.24 16 21 Si 0.95 44.06 29.54 68.60 2.03 46.08 16 22 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 23 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 24 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 25 C -0.10 -4.19 5.14 30.59 0.16 -4.03 16 26 C -0.09 -3.15 5.53 30.59 0.17 -2.98 16 27 H 0.07 1.00 8.14 -2.39 -0.02 0.99 16 28 H 0.08 0.91 8.09 -2.39 -0.02 0.89 16 29 H 0.06 1.03 7.53 -2.39 -0.02 1.01 16 30 H 0.15 1.36 8.06 -2.91 -0.02 1.34 16 31 H 0.15 1.20 8.06 -2.91 -0.02 1.18 16 32 H 0.14 1.48 8.06 -2.91 -0.02 1.46 16 33 H 0.13 2.11 6.30 -2.91 -0.02 2.09 16 34 H 0.07 1.10 7.66 -2.39 -0.02 1.08 16 35 H 0.07 1.14 7.66 -2.39 -0.02 1.12 16 36 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.03 0.70 7.44 -2.39 -0.02 0.68 16 39 H 0.08 1.58 8.06 -2.39 -0.02 1.56 16 40 H 0.34 8.45 8.47 -89.69 -0.76 7.69 16 41 H 0.07 2.26 7.80 -2.39 -0.02 2.24 16 42 H 0.05 1.79 8.13 -2.38 -0.02 1.77 16 43 H 0.05 1.77 7.45 -2.39 -0.02 1.75 16 44 H 0.03 1.23 8.14 -2.38 -0.02 1.22 16 45 H 0.05 2.97 6.07 -2.39 -0.01 2.96 16 46 H -0.01 -0.50 8.14 -2.38 -0.02 -0.52 16 47 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 48 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 49 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 50 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 51 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -62.90 398.26 2.45 -60.44 By element: Atomic # 1 Polarization: 21.83 SS G_CDS: 0.12 Total: 21.95 kcal Atomic # 6 Polarization: -50.82 SS G_CDS: 3.98 Total: -46.84 kcal Atomic # 7 Polarization: -70.91 SS G_CDS: -2.83 Total: -73.74 kcal Atomic # 8 Polarization: -7.05 SS G_CDS: -0.85 Total: -7.89 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.08 kcal Total: -62.90 2.45 -60.44 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173326472.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.390 kcal (2) G-P(sol) polarization free energy of solvation -62.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds