Wall clock time and date at job start Tue Mar 31 2020 11:41:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38167 * 120.02421 * 2 1 4 4 C 1.38243 * 120.05381 * 179.97438 * 3 2 1 5 5 C 1.38290 * 120.11176 * 0.02783 * 4 3 2 6 6 C 1.38120 * 120.05467 * 0.02562 * 5 4 3 7 7 C 1.38706 * 120.02901 * 179.72450 * 2 1 3 8 8 O 1.35899 * 120.05735 * 0.02562 * 7 2 1 9 9 C 1.42903 * 117.00037 * 180.02562 * 8 7 2 10 10 C 1.52997 * 109.46782 * 179.97438 * 9 8 7 11 11 H 1.09002 * 109.47008 * 184.99892 * 10 9 8 12 12 C 1.53001 * 109.47266 * 304.99290 * 10 9 8 13 13 N 1.46895 * 109.47807 * 64.99881 * 10 9 8 14 14 C 1.46898 * 111.00394 * 154.99573 * 13 10 9 15 15 C 1.53001 * 109.47327 * 275.00071 * 14 13 10 16 16 C 1.52998 * 109.47230 * 179.97438 * 15 14 13 17 17 C 1.52999 * 109.46970 * 60.00029 * 16 15 14 18 18 C 1.50699 * 109.47018 * 180.02562 * 17 16 15 19 19 H 1.08008 * 120.00344 * 119.99929 * 18 17 16 20 20 C 1.37879 * 119.99832 * 299.99790 * 18 17 16 21 21 N 1.31511 * 119.99981 * 180.02562 * 20 18 17 22 22 Si 1.86799 * 119.99989 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47316 * 89.99699 * 22 20 18 24 24 H 1.48507 * 109.46940 * 209.99863 * 22 20 18 25 25 H 1.48501 * 109.47071 * 329.99639 * 22 20 18 26 26 C 1.53001 * 109.47120 * 300.00038 * 17 16 15 27 27 C 1.52998 * 109.47230 * 60.00121 * 26 17 16 28 28 H 1.08999 * 109.47015 * 90.00178 * 1 2 3 29 29 H 1.09000 * 109.46646 * 209.99331 * 1 2 3 30 30 H 1.09000 * 109.47248 * 330.00048 * 1 2 3 31 31 H 1.07999 * 119.97383 * 359.97438 * 3 2 1 32 32 H 1.08002 * 119.94166 * 180.02562 * 4 3 2 33 33 H 1.07997 * 119.97172 * 179.97438 * 5 4 3 34 34 H 1.07997 * 120.02300 * 179.97438 * 6 5 4 35 35 H 1.08996 * 109.46598 * 299.99752 * 9 8 7 36 36 H 1.09001 * 109.47409 * 59.99701 * 9 8 7 37 37 H 1.09006 * 109.47132 * 300.00456 * 12 10 9 38 38 H 1.09002 * 109.46615 * 60.00361 * 12 10 9 39 39 H 1.08998 * 109.47194 * 180.02562 * 12 10 9 40 40 H 1.00907 * 110.99744 * 31.03935 * 13 10 9 41 41 H 1.08998 * 109.46612 * 35.00129 * 14 13 10 42 42 H 1.08994 * 109.46845 * 300.00195 * 15 14 13 43 43 H 1.08998 * 109.46650 * 59.99825 * 15 14 13 44 44 H 1.09000 * 109.46846 * 300.00588 * 16 15 14 45 45 H 1.09000 * 109.47251 * 179.97438 * 16 15 14 46 46 H 1.09003 * 109.47310 * 59.99955 * 17 16 15 47 47 H 0.97003 * 120.00643 * 179.97438 * 21 20 18 48 48 H 1.09005 * 109.47326 * 299.99747 * 26 17 16 49 49 H 1.09006 * 109.46903 * 180.02562 * 26 17 16 50 50 H 1.09000 * 109.47251 * 180.02562 * 27 26 17 51 51 H 1.09003 * 109.47140 * 60.00119 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1963 0.0000 4 6 3.5808 1.1970 0.0005 5 6 4.2752 0.0011 0.0005 6 6 3.5887 -1.1974 -0.0006 7 6 2.2012 -1.2009 0.0058 8 8 1.5235 -2.3788 0.0109 9 6 2.3036 -3.5761 0.0173 10 6 1.3733 -4.7908 0.0230 11 1 1.9652 -5.7012 0.1174 12 6 0.4060 -4.6868 1.2039 13 7 0.6113 -4.8301 -1.2322 14 6 0.1819 -6.1997 -1.5447 15 6 1.3061 -6.9313 -2.2808 16 6 0.8590 -8.3580 -2.6058 17 6 -0.3865 -8.3124 -3.4932 18 6 -0.8273 -9.7177 -3.8127 19 1 -1.8108 -10.0549 -3.5202 20 6 0.0250 -10.5728 -4.4786 21 7 -0.3597 -11.7990 -4.7579 22 14 1.7263 -9.9898 -4.9838 23 1 2.6920 -10.2759 -3.8926 24 1 2.1475 -10.7020 -6.2171 25 1 1.6917 -8.5281 -5.2437 26 6 -1.5107 -7.5808 -2.7571 27 6 -1.0636 -6.1542 -2.4322 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3632 -0.8901 0.5137 30 1 -0.3634 0.8900 0.5138 31 1 1.6584 2.1315 -0.0004 32 1 4.1194 2.1331 0.0010 33 1 5.3552 0.0043 0.0005 34 1 4.1315 -2.1311 -0.0011 35 1 2.9330 -3.6042 -0.8721 36 1 2.9318 -3.5958 0.9078 37 1 0.9714 -4.6577 2.1353 38 1 -0.1859 -3.7763 1.1095 39 1 -0.2564 -5.5523 1.2082 40 1 1.1458 -4.4364 -1.9922 41 1 -0.0505 -6.7275 -0.6198 42 1 1.5385 -6.4034 -3.2057 43 1 2.1932 -6.9641 -1.6484 44 1 0.6268 -8.8855 -1.6806 45 1 1.6597 -8.8790 -3.1306 46 1 -0.1544 -7.7848 -4.4183 47 1 0.2397 -12.4006 -5.2266 48 1 -1.7429 -8.1085 -1.8319 49 1 -2.3982 -7.5488 -3.3892 50 1 -1.8644 -5.6331 -1.9073 51 1 -0.8316 -5.6265 -3.3573 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173329816.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:40 Heat of formation + Delta-G solvation = -34.509272 kcal Electronic energy + Delta-G solvation = -26823.965786 eV Core-core repulsion = 23301.382726 eV Total energy + Delta-G solvation = -3522.583060 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.50229 -38.82813 -37.71745 -35.60001 -33.07921 -32.65670 -31.06824 -30.12723 -30.06293 -27.96391 -27.24803 -26.79675 -24.08124 -22.71226 -22.03042 -21.73720 -20.70298 -20.33071 -18.98261 -18.29455 -16.62350 -16.43796 -16.21280 -15.92999 -15.58371 -15.07401 -14.76412 -14.36794 -14.02748 -13.63376 -13.54232 -13.35515 -13.34023 -13.03170 -12.95020 -12.72305 -12.49676 -12.40842 -12.19668 -12.08067 -11.69908 -11.61871 -11.57916 -11.45002 -11.19658 -11.04578 -10.88108 -10.74487 -10.56106 -10.36839 -10.04312 -9.82129 -9.54803 -9.10912 -9.08749 -8.88718 -8.52199 -8.31434 -8.14759 -6.05290 -4.03433 1.06065 1.21110 2.98978 3.25792 3.37032 3.39615 3.50736 4.13134 4.41992 4.45863 4.53222 4.67006 4.73522 4.80932 4.96194 5.03614 5.12801 5.17760 5.22667 5.27517 5.37105 5.38079 5.44051 5.50714 5.56421 5.62937 5.65197 5.72385 5.88115 5.96071 6.02620 6.03616 6.08868 6.16833 6.20878 6.23650 6.25053 6.28379 6.32069 6.43254 6.54149 6.55930 6.66127 6.76367 6.93338 7.03589 7.18283 7.26392 7.35196 7.50022 7.60846 7.81807 8.56304 8.99971 9.58031 11.08272 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.023123 B = 0.002549 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.632082 B =10982.889296 C =11470.340019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.117 4.117 3 C -0.085 4.085 4 C -0.160 4.160 5 C -0.088 4.088 6 C -0.210 4.210 7 C 0.132 3.868 8 O -0.290 6.290 9 C 0.060 3.940 10 C 0.086 3.914 11 H 0.063 0.937 12 C -0.137 4.137 13 N -0.675 5.675 14 C 0.091 3.909 15 C -0.149 4.149 16 C -0.115 4.115 17 C 0.014 3.986 18 C -0.511 4.511 19 H 0.073 0.927 20 C 0.067 3.933 21 N -0.904 5.904 22 Si 0.889 3.111 23 H -0.281 1.281 24 H -0.299 1.299 25 H -0.266 1.266 26 C -0.099 4.099 27 C -0.102 4.102 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.061 0.939 31 H 0.126 0.874 32 H 0.121 0.879 33 H 0.121 0.879 34 H 0.125 0.875 35 H 0.060 0.940 36 H 0.065 0.935 37 H 0.050 0.950 38 H 0.069 0.931 39 H 0.057 0.943 40 H 0.338 0.662 41 H 0.076 0.924 42 H 0.056 0.944 43 H 0.044 0.956 44 H 0.058 0.942 45 H 0.044 0.956 46 H 0.024 0.976 47 H 0.262 0.738 48 H 0.052 0.948 49 H 0.055 0.945 50 H 0.057 0.943 51 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.709 24.663 12.334 28.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.118 4.118 3 C -0.103 4.103 4 C -0.178 4.178 5 C -0.106 4.106 6 C -0.228 4.228 7 C 0.086 3.914 8 O -0.203 6.203 9 C -0.016 4.016 10 C -0.024 4.024 11 H 0.081 0.919 12 C -0.194 4.194 13 N -0.306 5.306 14 C -0.018 4.018 15 C -0.188 4.188 16 C -0.153 4.153 17 C -0.005 4.005 18 C -0.549 4.549 19 H 0.091 0.909 20 C -0.134 4.134 21 N -0.542 5.542 22 Si 0.719 3.281 23 H -0.209 1.209 24 H -0.227 1.227 25 H -0.191 1.191 26 C -0.137 4.137 27 C -0.141 4.141 28 H 0.087 0.913 29 H 0.092 0.908 30 H 0.080 0.920 31 H 0.144 0.856 32 H 0.139 0.861 33 H 0.139 0.861 34 H 0.143 0.857 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.069 0.931 38 H 0.088 0.912 39 H 0.076 0.924 40 H 0.157 0.843 41 H 0.094 0.906 42 H 0.074 0.926 43 H 0.062 0.938 44 H 0.077 0.923 45 H 0.062 0.938 46 H 0.043 0.957 47 H 0.072 0.928 48 H 0.071 0.929 49 H 0.074 0.926 50 H 0.076 0.924 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.940 24.627 12.565 28.506 hybrid contribution 2.394 -0.430 -0.651 2.518 sum 9.334 24.197 11.915 28.541 Atomic orbital electron populations 1.20610 0.90327 1.02710 1.02508 1.19312 0.96708 0.90317 1.05420 1.20893 0.94114 0.96813 0.98529 1.21011 0.94261 0.97988 1.04560 1.20911 0.99676 0.91964 0.98013 1.21262 0.93147 0.99408 1.09031 1.18914 0.90314 0.86180 0.95952 1.86193 1.34757 1.11497 1.87848 1.23061 0.93888 0.83457 1.01219 1.21618 0.93891 0.94110 0.92790 0.91927 1.21714 0.99295 1.03148 0.95281 1.60697 1.44680 1.21129 1.04101 1.21657 0.95088 0.86648 0.98433 1.22317 0.97610 0.99213 0.99639 1.21906 0.99497 0.93058 1.00829 1.19151 0.91097 0.96554 0.93690 1.21120 1.02517 0.94816 1.36427 0.90909 1.25045 0.98241 0.94736 0.95385 1.69904 1.36734 1.05977 1.41604 0.86825 0.85068 0.79110 0.77048 1.20861 1.22697 1.19127 1.21443 0.99016 0.93172 1.00045 1.21518 0.95978 0.98053 0.98506 0.91267 0.90840 0.91999 0.85584 0.86130 0.86080 0.85695 0.92173 0.91676 0.93105 0.91170 0.92355 0.84325 0.90610 0.92551 0.93776 0.92289 0.93788 0.95744 0.92783 0.92892 0.92597 0.92424 0.92723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.95 9.80 36.01 0.35 -0.59 16 2 C -0.12 -1.19 5.89 -104.47 -0.62 -1.80 16 3 C -0.09 -0.74 9.70 -39.61 -0.38 -1.13 16 4 C -0.16 -1.32 10.04 -39.56 -0.40 -1.72 16 5 C -0.09 -0.75 10.04 -39.61 -0.40 -1.15 16 6 C -0.21 -2.02 9.04 -39.43 -0.36 -2.38 16 7 C 0.13 1.44 6.66 -39.22 -0.26 1.18 16 8 O -0.29 -3.26 8.25 -19.42 -0.16 -3.42 16 9 C 0.06 0.57 4.29 37.16 0.16 0.73 16 10 C 0.09 0.94 2.83 -67.72 -0.19 0.75 16 11 H 0.06 0.69 7.11 -51.93 -0.37 0.32 16 12 C -0.14 -1.47 9.20 37.16 0.34 -1.13 16 13 N -0.68 -8.64 6.01 -99.75 -0.60 -9.23 16 14 C 0.09 1.36 2.28 -67.71 -0.15 1.21 16 15 C -0.15 -2.47 5.16 -26.73 -0.14 -2.61 16 16 C -0.11 -2.41 4.68 -26.73 -0.13 -2.54 16 17 C 0.01 0.32 1.69 -91.77 -0.16 0.16 16 18 C -0.51 -14.31 9.14 -34.44 -0.31 -14.63 16 19 H 0.07 2.21 7.99 -52.48 -0.42 1.79 16 20 C 0.07 1.94 5.45 -17.82 -0.10 1.84 16 21 N -0.90 -27.84 13.96 55.43 0.77 -27.07 16 22 Si 0.89 22.15 24.37 -169.99 -4.14 18.01 16 23 H -0.28 -6.83 6.87 56.52 0.39 -6.44 16 24 H -0.30 -7.51 7.11 56.52 0.40 -7.11 16 25 H -0.27 -6.35 6.53 56.52 0.37 -5.99 16 26 C -0.10 -1.93 5.14 -26.73 -0.14 -2.07 16 27 C -0.10 -1.67 5.53 -26.73 -0.15 -1.82 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.07 0.73 7.52 -51.93 -0.39 0.34 16 30 H 0.06 0.45 8.09 -51.93 -0.42 0.03 16 31 H 0.13 0.82 8.06 -52.49 -0.42 0.39 16 32 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 33 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 34 H 0.13 1.03 6.30 -52.49 -0.33 0.70 16 35 H 0.06 0.55 7.53 -51.93 -0.39 0.16 16 36 H 0.07 0.54 7.68 -51.93 -0.40 0.14 16 37 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.82 7.56 -51.93 -0.39 0.43 16 39 H 0.06 0.67 7.43 -51.93 -0.39 0.28 16 40 H 0.34 4.25 8.02 -39.29 -0.32 3.94 16 41 H 0.08 1.16 7.11 -51.93 -0.37 0.79 16 42 H 0.06 0.95 8.13 -51.93 -0.42 0.52 16 43 H 0.04 0.66 7.43 -51.93 -0.39 0.27 16 44 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 45 H 0.04 1.00 3.27 -51.93 -0.17 0.83 16 46 H 0.02 0.59 7.20 -51.93 -0.37 0.21 16 47 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 48 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 49 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 50 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 51 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 387.48 15.07 5.84 5.84 Total: -1.00 -30.48 387.48 -10.25 -40.73 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -8.94 Total: 2.83 kcal Atomic # 6 Polarization: -24.67 SS G_CDS: -3.02 Total: -27.69 kcal Atomic # 7 Polarization: -36.48 SS G_CDS: 0.17 Total: -36.30 kcal Atomic # 8 Polarization: -3.26 SS G_CDS: -0.16 Total: -3.42 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.14 Total: 18.01 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -30.48 -10.25 -40.73 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173329816.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.221 kcal (2) G-P(sol) polarization free energy of solvation -30.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds