Wall clock time and date at job start Tue Mar 31 2020 11:41:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38167 * 120.02421 * 2 1 4 4 C 1.38243 * 120.05381 * 179.97438 * 3 2 1 5 5 C 1.38290 * 120.11176 * 0.02783 * 4 3 2 6 6 C 1.38120 * 120.05467 * 0.02562 * 5 4 3 7 7 C 1.38706 * 120.02901 * 179.72450 * 2 1 3 8 8 O 1.35899 * 120.05735 * 0.02562 * 7 2 1 9 9 C 1.42903 * 117.00037 * 180.02562 * 8 7 2 10 10 C 1.52997 * 109.46782 * 179.97438 * 9 8 7 11 11 H 1.09002 * 109.47008 * 184.99892 * 10 9 8 12 12 C 1.53001 * 109.47266 * 304.99290 * 10 9 8 13 13 N 1.46895 * 109.47807 * 64.99881 * 10 9 8 14 14 C 1.46898 * 111.00394 * 154.99573 * 13 10 9 15 15 C 1.53001 * 109.47327 * 275.00071 * 14 13 10 16 16 C 1.52998 * 109.47230 * 179.97438 * 15 14 13 17 17 C 1.52999 * 109.46970 * 60.00029 * 16 15 14 18 18 C 1.50699 * 109.47018 * 180.02562 * 17 16 15 19 19 H 1.08008 * 120.00344 * 119.99929 * 18 17 16 20 20 C 1.37879 * 119.99832 * 299.99790 * 18 17 16 21 21 N 1.31511 * 119.99981 * 180.02562 * 20 18 17 22 22 Si 1.86799 * 119.99989 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47316 * 89.99699 * 22 20 18 24 24 H 1.48507 * 109.46940 * 209.99863 * 22 20 18 25 25 H 1.48501 * 109.47071 * 329.99639 * 22 20 18 26 26 C 1.53001 * 109.47120 * 300.00038 * 17 16 15 27 27 C 1.52998 * 109.47230 * 60.00121 * 26 17 16 28 28 H 1.08999 * 109.47015 * 90.00178 * 1 2 3 29 29 H 1.09000 * 109.46646 * 209.99331 * 1 2 3 30 30 H 1.09000 * 109.47248 * 330.00048 * 1 2 3 31 31 H 1.07999 * 119.97383 * 359.97438 * 3 2 1 32 32 H 1.08002 * 119.94166 * 180.02562 * 4 3 2 33 33 H 1.07997 * 119.97172 * 179.97438 * 5 4 3 34 34 H 1.07997 * 120.02300 * 179.97438 * 6 5 4 35 35 H 1.08996 * 109.46598 * 299.99752 * 9 8 7 36 36 H 1.09001 * 109.47409 * 59.99701 * 9 8 7 37 37 H 1.09006 * 109.47132 * 300.00456 * 12 10 9 38 38 H 1.09002 * 109.46615 * 60.00361 * 12 10 9 39 39 H 1.08998 * 109.47194 * 180.02562 * 12 10 9 40 40 H 1.00907 * 110.99744 * 31.03935 * 13 10 9 41 41 H 1.08998 * 109.46612 * 35.00129 * 14 13 10 42 42 H 1.08994 * 109.46845 * 300.00195 * 15 14 13 43 43 H 1.08998 * 109.46650 * 59.99825 * 15 14 13 44 44 H 1.09000 * 109.46846 * 300.00588 * 16 15 14 45 45 H 1.09000 * 109.47251 * 179.97438 * 16 15 14 46 46 H 1.09003 * 109.47310 * 59.99955 * 17 16 15 47 47 H 0.97003 * 120.00643 * 179.97438 * 21 20 18 48 48 H 1.09005 * 109.47326 * 299.99747 * 26 17 16 49 49 H 1.09006 * 109.46903 * 180.02562 * 26 17 16 50 50 H 1.09000 * 109.47251 * 180.02562 * 27 26 17 51 51 H 1.09003 * 109.47140 * 60.00119 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1963 0.0000 4 6 3.5808 1.1970 0.0005 5 6 4.2752 0.0011 0.0005 6 6 3.5887 -1.1974 -0.0006 7 6 2.2012 -1.2009 0.0058 8 8 1.5235 -2.3788 0.0109 9 6 2.3036 -3.5761 0.0173 10 6 1.3733 -4.7908 0.0230 11 1 1.9652 -5.7012 0.1174 12 6 0.4060 -4.6868 1.2039 13 7 0.6113 -4.8301 -1.2322 14 6 0.1819 -6.1997 -1.5447 15 6 1.3061 -6.9313 -2.2808 16 6 0.8590 -8.3580 -2.6058 17 6 -0.3865 -8.3124 -3.4932 18 6 -0.8273 -9.7177 -3.8127 19 1 -1.8108 -10.0549 -3.5202 20 6 0.0250 -10.5728 -4.4786 21 7 -0.3597 -11.7990 -4.7579 22 14 1.7263 -9.9898 -4.9838 23 1 2.6920 -10.2759 -3.8926 24 1 2.1475 -10.7020 -6.2171 25 1 1.6917 -8.5281 -5.2437 26 6 -1.5107 -7.5808 -2.7571 27 6 -1.0636 -6.1542 -2.4322 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3632 -0.8901 0.5137 30 1 -0.3634 0.8900 0.5138 31 1 1.6584 2.1315 -0.0004 32 1 4.1194 2.1331 0.0010 33 1 5.3552 0.0043 0.0005 34 1 4.1315 -2.1311 -0.0011 35 1 2.9330 -3.6042 -0.8721 36 1 2.9318 -3.5958 0.9078 37 1 0.9714 -4.6577 2.1353 38 1 -0.1859 -3.7763 1.1095 39 1 -0.2564 -5.5523 1.2082 40 1 1.1458 -4.4364 -1.9922 41 1 -0.0505 -6.7275 -0.6198 42 1 1.5385 -6.4034 -3.2057 43 1 2.1932 -6.9641 -1.6484 44 1 0.6268 -8.8855 -1.6806 45 1 1.6597 -8.8790 -3.1306 46 1 -0.1544 -7.7848 -4.4183 47 1 0.2397 -12.4006 -5.2266 48 1 -1.7429 -8.1085 -1.8319 49 1 -2.3982 -7.5488 -3.3892 50 1 -1.8644 -5.6331 -1.9073 51 1 -0.8316 -5.6265 -3.3573 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173329816.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:39 Heat of formation + Delta-G solvation = -51.618502 kcal Electronic energy + Delta-G solvation = -26824.707698 eV Core-core repulsion = 23301.382726 eV Total energy + Delta-G solvation = -3523.324972 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.20322 -40.05763 -38.58480 -36.78345 -34.62595 -33.66486 -32.48344 -31.62456 -30.77228 -29.35835 -28.01172 -27.48959 -25.84510 -23.62242 -23.40065 -22.43794 -22.08765 -21.27043 -20.50234 -18.98937 -18.76048 -17.37011 -17.14165 -16.79489 -16.56339 -16.12175 -15.91114 -15.35991 -15.11677 -14.96448 -14.77663 -14.58618 -14.48927 -14.34428 -13.97827 -13.88365 -13.75716 -13.33638 -13.18499 -13.10979 -12.98661 -12.85003 -12.64985 -12.40278 -12.20488 -12.13743 -12.07527 -11.91767 -11.77735 -11.70273 -11.63739 -11.54732 -11.20379 -10.92095 -10.75952 -10.59279 -9.72993 -9.24068 -8.99231 -8.29909 -6.32752 0.41629 0.55151 1.27173 1.33594 1.44473 2.28833 2.31549 2.85923 3.05301 3.13147 3.71443 3.87248 3.90484 3.95098 4.02109 4.04357 4.24097 4.26961 4.29485 4.36633 4.45484 4.49595 4.51629 4.53771 4.64715 4.69807 4.74022 4.74132 4.78419 4.82226 4.86691 4.87580 4.92982 5.02156 5.04017 5.08147 5.20311 5.26897 5.37246 5.37663 5.41597 5.44070 5.49859 5.57890 5.62298 5.65090 5.71720 5.82813 5.93774 6.16664 6.34200 6.50499 6.55753 6.75422 7.32548 8.87287 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.023123 B = 0.002549 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.632082 B =10982.889296 C =11470.340019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.138 4.138 3 C -0.091 4.091 4 C -0.164 4.164 5 C -0.095 4.095 6 C -0.219 4.219 7 C 0.111 3.889 8 O -0.305 6.305 9 C 0.061 3.939 10 C 0.085 3.915 11 H 0.070 0.930 12 C -0.133 4.133 13 N -0.674 5.674 14 C 0.102 3.898 15 C -0.140 4.140 16 C -0.114 4.114 17 C 0.013 3.987 18 C -0.518 4.518 19 H 0.030 0.970 20 C 0.007 3.993 21 N -0.953 5.953 22 Si 0.954 3.046 23 H -0.267 1.267 24 H -0.302 1.302 25 H -0.247 1.247 26 C -0.094 4.094 27 C -0.093 4.093 28 H 0.065 0.935 29 H 0.059 0.941 30 H 0.077 0.923 31 H 0.146 0.854 32 H 0.143 0.857 33 H 0.142 0.858 34 H 0.136 0.864 35 H 0.067 0.933 36 H 0.080 0.920 37 H 0.065 0.935 38 H 0.057 0.943 39 H 0.048 0.952 40 H 0.342 0.658 41 H 0.075 0.925 42 H 0.060 0.940 43 H 0.068 0.932 44 H 0.052 0.948 45 H 0.030 0.970 46 H 0.019 0.981 47 H 0.264 0.736 48 H 0.046 0.954 49 H 0.045 0.955 50 H 0.069 0.931 51 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.189 27.667 13.250 32.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.138 4.138 3 C -0.109 4.109 4 C -0.182 4.182 5 C -0.113 4.113 6 C -0.238 4.238 7 C 0.065 3.935 8 O -0.219 6.219 9 C -0.014 4.014 10 C -0.024 4.024 11 H 0.088 0.912 12 C -0.191 4.191 13 N -0.305 5.305 14 C -0.008 4.008 15 C -0.179 4.179 16 C -0.152 4.152 17 C -0.006 4.006 18 C -0.556 4.556 19 H 0.049 0.951 20 C -0.190 4.190 21 N -0.594 5.594 22 Si 0.781 3.219 23 H -0.194 1.194 24 H -0.230 1.230 25 H -0.170 1.170 26 C -0.132 4.132 27 C -0.131 4.131 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.096 0.904 31 H 0.163 0.837 32 H 0.161 0.839 33 H 0.160 0.840 34 H 0.154 0.846 35 H 0.085 0.915 36 H 0.099 0.901 37 H 0.084 0.916 38 H 0.076 0.924 39 H 0.068 0.932 40 H 0.161 0.839 41 H 0.093 0.907 42 H 0.079 0.921 43 H 0.087 0.913 44 H 0.071 0.929 45 H 0.049 0.951 46 H 0.037 0.963 47 H 0.073 0.927 48 H 0.065 0.935 49 H 0.064 0.936 50 H 0.088 0.912 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 9.416 27.664 13.499 32.190 hybrid contribution 1.518 -1.362 -0.900 2.229 sum 10.934 26.302 12.599 31.146 Atomic orbital electron populations 1.20570 0.90098 1.02805 1.02274 1.19583 0.97223 0.90858 1.06154 1.21191 0.94639 0.97130 0.97905 1.21359 0.94303 0.98952 1.03549 1.21248 1.00881 0.91772 0.97359 1.21470 0.92842 1.00410 1.09067 1.19147 0.91011 0.86200 0.97117 1.86162 1.35482 1.11985 1.88225 1.23070 0.93533 0.82511 1.02324 1.21675 0.93971 0.95130 0.91626 0.91220 1.21673 0.99226 1.02052 0.96108 1.60625 1.45634 1.19251 1.04996 1.21444 0.93868 0.87780 0.97739 1.22248 0.98997 0.96072 1.00576 1.21772 0.97657 0.96050 0.99695 1.19121 0.93432 0.93557 0.94458 1.21494 1.00840 0.97473 1.35777 0.95148 1.25937 1.02763 0.94689 0.95564 1.70064 1.38564 1.07583 1.43209 0.85762 0.79876 0.79533 0.76714 1.19360 1.23020 1.17048 1.21346 0.97591 0.95197 0.99106 1.21396 0.97199 0.95331 0.99156 0.91631 0.92233 0.90392 0.83664 0.83904 0.84042 0.84647 0.91458 0.90148 0.91604 0.92354 0.93250 0.83860 0.90724 0.92138 0.91343 0.92895 0.95142 0.96283 0.92708 0.93481 0.93604 0.91207 0.92486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.73 9.80 71.24 0.70 -1.03 16 2 C -0.14 -2.61 5.89 -19.77 -0.12 -2.72 16 3 C -0.09 -1.39 9.70 22.25 0.22 -1.17 16 4 C -0.16 -2.27 10.04 22.28 0.22 -2.04 16 5 C -0.09 -1.38 10.04 22.25 0.22 -1.16 16 6 C -0.22 -3.76 9.04 22.37 0.20 -3.55 16 7 C 0.11 2.24 6.66 22.51 0.15 2.39 16 8 O -0.31 -6.36 8.25 -92.41 -0.76 -7.12 16 9 C 0.06 1.02 4.29 71.98 0.31 1.33 16 10 C 0.09 1.63 2.83 44.92 0.13 1.76 16 11 H 0.07 1.28 7.11 -2.39 -0.02 1.26 16 12 C -0.13 -2.60 9.20 71.98 0.66 -1.94 16 13 N -0.67 -15.43 6.01 -469.49 -2.82 -18.25 16 14 C 0.10 2.78 2.28 44.92 0.10 2.89 16 15 C -0.14 -4.22 5.16 30.59 0.16 -4.06 16 16 C -0.11 -4.59 4.68 30.59 0.14 -4.44 16 17 C 0.01 0.60 1.69 -11.54 -0.02 0.58 16 18 C -0.52 -29.95 9.14 25.60 0.23 -29.72 16 19 H 0.03 1.95 7.99 -2.91 -0.02 1.92 16 20 C 0.01 0.40 5.45 84.66 0.46 0.86 16 21 N -0.95 -60.74 13.96 21.45 0.30 -60.44 16 22 Si 0.95 45.72 24.37 68.60 1.67 47.39 16 23 H -0.27 -12.14 6.87 99.48 0.68 -11.46 16 24 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 25 H -0.25 -10.92 6.53 99.48 0.65 -10.27 16 26 C -0.09 -3.69 5.14 30.59 0.16 -3.53 16 27 C -0.09 -2.86 5.53 30.59 0.17 -2.69 16 28 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.06 1.16 7.52 -2.39 -0.02 1.14 16 30 H 0.08 1.02 8.09 -2.39 -0.02 1.00 16 31 H 0.15 1.52 8.06 -2.91 -0.02 1.50 16 32 H 0.14 1.26 8.06 -2.91 -0.02 1.24 16 33 H 0.14 1.39 8.06 -2.91 -0.02 1.37 16 34 H 0.14 1.90 6.30 -2.91 -0.02 1.88 16 35 H 0.07 1.03 7.53 -2.39 -0.02 1.01 16 36 H 0.08 1.09 7.68 -2.39 -0.02 1.08 16 37 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 38 H 0.06 1.28 7.56 -2.39 -0.02 1.27 16 39 H 0.05 1.04 7.43 -2.39 -0.02 1.03 16 40 H 0.34 7.56 8.02 -89.69 -0.72 6.84 16 41 H 0.07 2.11 7.11 -2.39 -0.02 2.09 16 42 H 0.06 1.80 8.13 -2.39 -0.02 1.79 16 43 H 0.07 1.77 7.43 -2.39 -0.02 1.75 16 44 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 45 H 0.03 1.31 3.27 -2.39 -0.01 1.30 16 46 H 0.02 0.90 7.20 -2.39 -0.02 0.88 16 47 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 48 H 0.05 1.86 8.14 -2.38 -0.02 1.85 16 49 H 0.05 1.84 8.14 -2.38 -0.02 1.82 16 50 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 51 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -67.77 387.48 2.59 -65.18 By element: Atomic # 1 Polarization: 21.40 SS G_CDS: 0.10 Total: 21.49 kcal Atomic # 6 Polarization: -52.35 SS G_CDS: 4.10 Total: -48.25 kcal Atomic # 7 Polarization: -76.17 SS G_CDS: -2.52 Total: -78.69 kcal Atomic # 8 Polarization: -6.36 SS G_CDS: -0.76 Total: -7.12 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 1.67 Total: 47.39 kcal Total: -67.77 2.59 -65.18 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173329816.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.565 kcal (2) G-P(sol) polarization free energy of solvation -67.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds