Wall clock time and date at job start Tue Mar 31 2020 11:10:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00139 * 2 1 4 4 H 1.48501 * 109.47088 * 270.27618 * 3 2 1 5 5 H 1.48495 * 109.47293 * 30.27820 * 3 2 1 6 6 H 1.48507 * 109.47015 * 150.27778 * 3 2 1 7 7 C 1.37885 * 119.99792 * 180.27823 * 2 1 3 8 8 H 1.08000 * 119.99535 * 359.72167 * 7 2 1 9 9 C 1.50694 * 119.99902 * 179.72330 * 7 2 1 10 10 C 1.53000 * 109.47355 * 299.99988 * 9 7 2 11 11 C 1.53000 * 109.46922 * 300.00084 * 10 9 7 12 12 C 1.53003 * 109.47177 * 300.00135 * 11 10 9 13 13 N 1.46905 * 109.47100 * 180.02562 * 12 11 10 14 14 C 1.46893 * 111.00246 * 84.99423 * 13 12 11 15 15 C 1.53006 * 109.47165 * 179.97438 * 14 13 12 16 16 C 1.53001 * 109.47177 * 180.02562 * 15 14 13 17 17 O 1.42896 * 109.47113 * 180.02562 * 16 15 14 18 18 C 1.42894 * 114.00011 * 180.02562 * 17 16 15 19 19 C 1.50703 * 109.46884 * 179.97438 * 18 17 16 20 20 C 1.38237 * 120.00155 * 269.72184 * 19 18 17 21 21 C 1.38231 * 120.00149 * 179.76740 * 20 19 18 22 22 C 1.38239 * 120.00083 * 0.51230 * 21 20 19 23 23 C 1.38241 * 119.99694 * 359.74406 * 22 21 20 24 24 C 1.38235 * 120.00012 * 90.00528 * 19 18 17 25 25 C 1.52995 * 109.47306 * 59.99758 * 12 11 10 26 26 C 1.53000 * 109.47200 * 300.00228 * 25 12 11 27 27 H 0.97000 * 119.99468 * 359.71811 * 1 2 3 28 28 H 1.09002 * 109.47054 * 60.00069 * 9 7 2 29 29 H 1.08995 * 109.47131 * 59.99934 * 10 9 7 30 30 H 1.08998 * 109.47544 * 180.02562 * 10 9 7 31 31 H 1.09000 * 109.47156 * 179.97438 * 11 10 9 32 32 H 1.09007 * 109.47356 * 59.99868 * 11 10 9 33 33 H 1.08998 * 109.47015 * 299.99535 * 12 11 10 34 34 H 1.00900 * 110.99443 * 321.03943 * 13 12 11 35 35 H 1.08994 * 109.47255 * 300.00087 * 14 13 12 36 36 H 1.09002 * 109.46897 * 60.00009 * 14 13 12 37 37 H 1.08996 * 109.46865 * 300.00525 * 15 14 13 38 38 H 1.09000 * 109.46558 * 60.00011 * 15 14 13 39 39 H 1.09003 * 109.46870 * 300.00127 * 16 15 14 40 40 H 1.09002 * 109.47033 * 60.00211 * 16 15 14 41 41 H 1.08996 * 109.47095 * 299.99848 * 18 17 16 42 42 H 1.09000 * 109.47180 * 59.99877 * 18 17 16 43 43 H 1.08003 * 119.99412 * 0.02562 * 20 19 18 44 44 H 1.08004 * 120.00320 * 180.23419 * 21 20 19 45 45 H 1.07996 * 120.00231 * 179.72594 * 22 21 20 46 46 H 1.07995 * 119.99976 * 179.97438 * 23 22 21 47 47 H 1.07998 * 120.00119 * 359.97438 * 24 19 18 48 48 H 1.08995 * 109.47132 * 180.02562 * 25 12 11 49 49 H 1.09007 * 109.46935 * 60.00447 * 25 12 11 50 50 H 1.08998 * 109.46768 * 300.00007 * 26 25 12 51 51 H 1.09000 * 109.47156 * 180.02562 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4909 2.0497 -1.4001 5 1 1.4497 2.6509 0.7059 6 1 3.5497 1.4383 0.6942 7 6 2.0046 -1.1941 -0.0058 8 1 1.4645 -2.1294 -0.0058 9 6 3.5115 -1.1941 -0.0121 10 6 4.0163 -0.4699 -1.2617 11 6 3.5011 -1.1881 -2.5105 12 6 4.0110 -2.6306 -2.5161 13 7 3.5168 -3.3200 -3.7155 14 6 4.3960 -3.0712 -4.8657 15 6 3.8503 -3.8043 -6.0928 16 6 4.7664 -3.5457 -7.2906 17 8 4.2565 -4.2299 -8.4368 18 6 5.0431 -4.0536 -9.6166 19 6 4.4166 -4.8149 -10.7564 20 6 4.7816 -6.1267 -10.9947 21 6 4.2034 -6.8265 -12.0373 22 6 3.2680 -6.2111 -12.8481 23 6 2.9070 -4.8976 -12.6130 24 6 3.4814 -4.1994 -11.5672 25 6 3.5062 -3.3548 -1.2666 26 6 4.0215 -2.6366 -0.0177 27 1 -0.4849 0.8401 0.0041 28 1 3.8785 -0.6825 0.8776 29 1 3.6530 0.5578 -1.2577 30 1 5.1063 -0.4702 -1.2665 31 1 3.8603 -0.6718 -3.4008 32 1 2.4110 -1.1881 -2.5060 33 1 5.1010 -2.6307 -2.5208 34 1 2.5666 -3.0504 -3.9217 35 1 4.4346 -2.0011 -5.0687 36 1 5.3988 -3.4350 -4.6417 37 1 3.8120 -4.8744 -5.8894 38 1 2.8474 -3.4409 -6.3168 39 1 4.8051 -2.4755 -7.4940 40 1 5.7692 -3.9094 -7.0663 41 1 5.0883 -2.9941 -9.8682 42 1 6.0514 -4.4285 -9.4404 43 1 5.5154 -6.6062 -10.3638 44 1 4.4857 -7.8526 -12.2211 45 1 2.8196 -6.7564 -13.6653 46 1 2.1766 -4.4167 -13.2467 47 1 3.1993 -3.1732 -11.3837 48 1 3.8699 -4.3823 -1.2703 49 1 2.4162 -3.3548 -1.2620 50 1 5.1114 -2.6367 -0.0223 51 1 3.6622 -3.1529 0.8725 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173330239.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:22 Heat of formation + Delta-G solvation = -41.148158 kcal Electronic energy + Delta-G solvation = -25570.729127 eV Core-core repulsion = 22047.858184 eV Total energy + Delta-G solvation = -3522.870944 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.70359 -38.56420 -37.94835 -35.51735 -32.94926 -32.12844 -31.23855 -31.17326 -29.94189 -28.29601 -26.33737 -24.82255 -23.61162 -22.92239 -21.93995 -21.75165 -21.26510 -20.63781 -18.69962 -17.26158 -16.80073 -16.55111 -16.19112 -15.79209 -15.52171 -15.27080 -14.79910 -14.40394 -14.19269 -14.00792 -13.75287 -13.56031 -13.43581 -13.07523 -12.77300 -12.69181 -12.41979 -12.22545 -12.12657 -11.84767 -11.43218 -11.39290 -11.37077 -11.24103 -11.08260 -10.92862 -10.81322 -10.43975 -10.16573 -9.96786 -9.85126 -9.73881 -9.30855 -9.25318 -9.17440 -9.10647 -8.79667 -8.49133 -7.93769 -6.02996 -3.99475 0.92279 1.06974 3.19493 3.27276 3.38837 3.40695 3.73131 4.39973 4.44024 4.46500 4.62436 4.68908 4.78610 4.84745 4.93146 4.99344 5.11660 5.20765 5.21777 5.29085 5.30166 5.34561 5.45341 5.51408 5.62265 5.65647 5.69711 5.72499 5.88479 6.07883 6.09888 6.11187 6.16431 6.20498 6.22034 6.25393 6.33341 6.34858 6.44765 6.55620 6.63878 6.69075 6.78309 6.94878 7.07655 7.11625 7.14282 7.29919 7.48559 7.54437 7.75431 7.85947 8.58921 9.02328 9.60688 11.10073 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.023114 B = 0.001870 C = 0.001816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.109787 B =14972.590614 C =15414.533132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.067 3.933 3 Si 0.884 3.116 4 H -0.282 1.282 5 H -0.300 1.300 6 H -0.268 1.268 7 C -0.499 4.499 8 H 0.076 0.924 9 C 0.006 3.994 10 C -0.113 4.113 11 C -0.133 4.133 12 C 0.097 3.903 13 N -0.687 5.687 14 C 0.063 3.937 15 C -0.116 4.116 16 C 0.064 3.936 17 O -0.381 6.381 18 C 0.102 3.898 19 C -0.089 4.089 20 C -0.099 4.099 21 C -0.124 4.124 22 C -0.116 4.116 23 C -0.124 4.124 24 C -0.099 4.099 25 C -0.095 4.095 26 C -0.096 4.096 27 H 0.261 0.739 28 H 0.025 0.975 29 H 0.043 0.957 30 H 0.033 0.967 31 H 0.033 0.967 32 H 0.083 0.917 33 H 0.062 0.938 34 H 0.343 0.657 35 H 0.028 0.972 36 H 0.068 0.932 37 H 0.079 0.921 38 H 0.070 0.930 39 H 0.048 0.952 40 H 0.049 0.951 41 H 0.057 0.943 42 H 0.057 0.943 43 H 0.123 0.877 44 H 0.123 0.877 45 H 0.122 0.878 46 H 0.123 0.877 47 H 0.123 0.877 48 H 0.046 0.954 49 H 0.075 0.925 50 H 0.034 0.966 51 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.469 -9.600 -23.432 27.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.134 4.134 3 Si 0.716 3.284 4 H -0.209 1.209 5 H -0.228 1.228 6 H -0.193 1.193 7 C -0.537 4.537 8 H 0.094 0.906 9 C -0.013 4.013 10 C -0.151 4.151 11 C -0.172 4.172 12 C -0.012 4.012 13 N -0.317 5.317 14 C -0.067 4.067 15 C -0.154 4.154 16 C -0.013 4.013 17 O -0.300 6.300 18 C 0.026 3.974 19 C -0.090 4.090 20 C -0.117 4.117 21 C -0.142 4.142 22 C -0.134 4.134 23 C -0.142 4.142 24 C -0.117 4.117 25 C -0.133 4.133 26 C -0.134 4.134 27 H 0.071 0.929 28 H 0.043 0.957 29 H 0.061 0.939 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.102 0.898 33 H 0.080 0.920 34 H 0.162 0.838 35 H 0.047 0.953 36 H 0.086 0.914 37 H 0.097 0.903 38 H 0.088 0.912 39 H 0.066 0.934 40 H 0.068 0.932 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.141 0.859 44 H 0.141 0.859 45 H 0.140 0.860 46 H 0.141 0.859 47 H 0.141 0.859 48 H 0.065 0.935 49 H 0.094 0.906 50 H 0.053 0.947 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 11.447 -10.212 -23.268 27.869 hybrid contribution 0.375 2.232 -0.327 2.287 sum 11.821 -7.980 -23.595 27.570 Atomic orbital electron populations 1.69906 1.06172 1.26662 1.51479 1.25016 0.94620 0.98826 0.94915 0.86889 0.79898 0.84035 0.77613 1.20918 1.22766 1.19302 1.21028 0.88721 0.94221 1.49718 0.90598 1.19214 0.97169 0.92113 0.92768 1.21773 0.97202 0.98689 0.97398 1.22061 1.03139 0.95441 0.96535 1.21516 0.97966 0.91903 0.89799 1.60645 1.05938 1.61751 1.03330 1.21800 0.97352 0.97388 0.90162 1.21472 0.99311 1.02612 0.91986 1.22490 0.97275 0.95756 0.85771 1.87970 1.51334 1.73042 1.17670 1.21286 0.93734 0.98390 0.84004 1.19634 0.98371 0.94815 0.96132 1.21087 0.99734 0.93567 0.97316 1.21163 0.97365 0.99973 0.95710 1.21215 0.97573 0.95143 0.99482 1.21171 1.00117 0.94863 0.98034 1.21099 0.95526 1.00222 0.94843 1.21375 1.02386 0.96827 0.92719 1.21362 0.97359 0.97647 0.97080 0.92880 0.95742 0.93914 0.94799 0.94809 0.89824 0.92003 0.83850 0.95343 0.91358 0.90269 0.91175 0.93379 0.93229 0.92485 0.92479 0.85903 0.85883 0.86008 0.85871 0.85895 0.93516 0.90592 0.94713 0.92715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.30 13.96 55.43 0.77 -26.52 16 2 C 0.07 1.89 5.45 -17.82 -0.10 1.80 16 3 Si 0.88 22.02 24.37 -169.99 -4.14 17.87 16 4 H -0.28 -6.88 6.87 56.52 0.39 -6.49 16 5 H -0.30 -7.54 7.11 56.52 0.40 -7.14 16 6 H -0.27 -6.43 6.53 56.52 0.37 -6.06 16 7 C -0.50 -13.45 7.19 -34.44 -0.25 -13.69 16 8 H 0.08 2.22 6.95 -52.49 -0.37 1.85 16 9 C 0.01 0.14 2.18 -91.77 -0.20 -0.06 16 10 C -0.11 -2.39 4.94 -26.73 -0.13 -2.52 16 11 C -0.13 -2.58 4.95 -26.73 -0.13 -2.71 16 12 C 0.10 1.67 2.47 -67.71 -0.17 1.50 16 13 N -0.69 -10.47 6.25 -106.73 -0.67 -11.14 16 14 C 0.06 0.79 5.48 -3.82 -0.02 0.77 16 15 C -0.12 -1.33 5.84 -26.73 -0.16 -1.49 16 16 C 0.06 0.65 5.94 37.16 0.22 0.87 16 17 O -0.38 -4.37 10.33 -35.23 -0.36 -4.73 16 18 C 0.10 0.91 6.06 36.01 0.22 1.13 16 19 C -0.09 -0.83 5.51 -104.62 -0.58 -1.41 16 20 C -0.10 -0.85 9.70 -39.58 -0.38 -1.23 16 21 C -0.12 -0.95 10.05 -39.58 -0.40 -1.34 16 22 C -0.12 -0.86 10.05 -39.58 -0.40 -1.25 16 23 C -0.12 -0.96 10.05 -39.58 -0.40 -1.36 16 24 C -0.10 -0.87 9.70 -39.58 -0.38 -1.25 16 25 C -0.10 -1.77 5.30 -26.73 -0.14 -1.91 16 26 C -0.10 -1.89 5.41 -26.73 -0.14 -2.04 16 27 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 28 H 0.02 0.59 7.20 -51.93 -0.37 0.21 16 29 H 0.04 0.98 3.27 -51.93 -0.17 0.81 16 30 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.03 0.60 7.45 -51.93 -0.39 0.21 16 32 H 0.08 1.86 7.21 -51.93 -0.37 1.49 16 33 H 0.06 1.02 7.80 -51.93 -0.40 0.62 16 34 H 0.34 5.36 8.47 -39.29 -0.33 5.03 16 35 H 0.03 0.37 7.44 -51.93 -0.39 -0.02 16 36 H 0.07 0.83 8.05 -51.93 -0.42 0.41 16 37 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 38 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.06 0.44 8.09 -51.93 -0.42 0.02 16 42 H 0.06 0.43 8.08 -51.93 -0.42 0.01 16 43 H 0.12 0.88 8.06 -52.48 -0.42 0.46 16 44 H 0.12 0.68 8.06 -52.48 -0.42 0.25 16 45 H 0.12 0.63 8.06 -52.49 -0.42 0.21 16 46 H 0.12 0.71 8.06 -52.49 -0.42 0.28 16 47 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 48 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 49 H 0.08 1.60 6.62 -51.93 -0.34 1.26 16 50 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 51 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 392.05 15.07 5.91 5.91 Total: -1.00 -30.19 392.05 -11.10 -41.29 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: -9.07 Total: 3.53 kcal Atomic # 6 Polarization: -22.68 SS G_CDS: -3.54 Total: -26.21 kcal Atomic # 7 Polarization: -37.77 SS G_CDS: 0.11 Total: -37.66 kcal Atomic # 8 Polarization: -4.37 SS G_CDS: -0.36 Total: -4.73 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.14 Total: 17.87 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -30.19 -11.10 -41.29 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173330239.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.142 kcal (2) G-P(sol) polarization free energy of solvation -30.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds