Wall clock time and date at job start Tue Mar 31 2020 11:10:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00139 * 2 1 4 4 H 1.48501 * 109.47088 * 270.27618 * 3 2 1 5 5 H 1.48495 * 109.47293 * 30.27820 * 3 2 1 6 6 H 1.48507 * 109.47015 * 150.27778 * 3 2 1 7 7 C 1.37885 * 119.99792 * 180.27823 * 2 1 3 8 8 H 1.08000 * 119.99535 * 359.72167 * 7 2 1 9 9 C 1.50694 * 119.99902 * 179.72330 * 7 2 1 10 10 C 1.53000 * 109.47355 * 299.99988 * 9 7 2 11 11 C 1.53000 * 109.46922 * 300.00084 * 10 9 7 12 12 C 1.53003 * 109.47177 * 300.00135 * 11 10 9 13 13 N 1.46905 * 109.47100 * 180.02562 * 12 11 10 14 14 C 1.46893 * 111.00246 * 84.99423 * 13 12 11 15 15 C 1.53006 * 109.47165 * 179.97438 * 14 13 12 16 16 C 1.53001 * 109.47177 * 180.02562 * 15 14 13 17 17 O 1.42896 * 109.47113 * 180.02562 * 16 15 14 18 18 C 1.42894 * 114.00011 * 180.02562 * 17 16 15 19 19 C 1.50703 * 109.46884 * 179.97438 * 18 17 16 20 20 C 1.38237 * 120.00155 * 269.72184 * 19 18 17 21 21 C 1.38231 * 120.00149 * 179.76740 * 20 19 18 22 22 C 1.38239 * 120.00083 * 0.51230 * 21 20 19 23 23 C 1.38241 * 119.99694 * 359.74406 * 22 21 20 24 24 C 1.38235 * 120.00012 * 90.00528 * 19 18 17 25 25 C 1.52995 * 109.47306 * 59.99758 * 12 11 10 26 26 C 1.53000 * 109.47200 * 300.00228 * 25 12 11 27 27 H 0.97000 * 119.99468 * 359.71811 * 1 2 3 28 28 H 1.09002 * 109.47054 * 60.00069 * 9 7 2 29 29 H 1.08995 * 109.47131 * 59.99934 * 10 9 7 30 30 H 1.08998 * 109.47544 * 180.02562 * 10 9 7 31 31 H 1.09000 * 109.47156 * 179.97438 * 11 10 9 32 32 H 1.09007 * 109.47356 * 59.99868 * 11 10 9 33 33 H 1.08998 * 109.47015 * 299.99535 * 12 11 10 34 34 H 1.00900 * 110.99443 * 321.03943 * 13 12 11 35 35 H 1.08994 * 109.47255 * 300.00087 * 14 13 12 36 36 H 1.09002 * 109.46897 * 60.00009 * 14 13 12 37 37 H 1.08996 * 109.46865 * 300.00525 * 15 14 13 38 38 H 1.09000 * 109.46558 * 60.00011 * 15 14 13 39 39 H 1.09003 * 109.46870 * 300.00127 * 16 15 14 40 40 H 1.09002 * 109.47033 * 60.00211 * 16 15 14 41 41 H 1.08996 * 109.47095 * 299.99848 * 18 17 16 42 42 H 1.09000 * 109.47180 * 59.99877 * 18 17 16 43 43 H 1.08003 * 119.99412 * 0.02562 * 20 19 18 44 44 H 1.08004 * 120.00320 * 180.23419 * 21 20 19 45 45 H 1.07996 * 120.00231 * 179.72594 * 22 21 20 46 46 H 1.07995 * 119.99976 * 179.97438 * 23 22 21 47 47 H 1.07998 * 120.00119 * 359.97438 * 24 19 18 48 48 H 1.08995 * 109.47132 * 180.02562 * 25 12 11 49 49 H 1.09007 * 109.46935 * 60.00447 * 25 12 11 50 50 H 1.08998 * 109.46768 * 300.00007 * 26 25 12 51 51 H 1.09000 * 109.47156 * 180.02562 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4909 2.0497 -1.4001 5 1 1.4497 2.6509 0.7059 6 1 3.5497 1.4383 0.6942 7 6 2.0046 -1.1941 -0.0058 8 1 1.4645 -2.1294 -0.0058 9 6 3.5115 -1.1941 -0.0121 10 6 4.0163 -0.4699 -1.2617 11 6 3.5011 -1.1881 -2.5105 12 6 4.0110 -2.6306 -2.5161 13 7 3.5168 -3.3200 -3.7155 14 6 4.3960 -3.0712 -4.8657 15 6 3.8503 -3.8043 -6.0928 16 6 4.7664 -3.5457 -7.2906 17 8 4.2565 -4.2299 -8.4368 18 6 5.0431 -4.0536 -9.6166 19 6 4.4166 -4.8149 -10.7564 20 6 4.7816 -6.1267 -10.9947 21 6 4.2034 -6.8265 -12.0373 22 6 3.2680 -6.2111 -12.8481 23 6 2.9070 -4.8976 -12.6130 24 6 3.4814 -4.1994 -11.5672 25 6 3.5062 -3.3548 -1.2666 26 6 4.0215 -2.6366 -0.0177 27 1 -0.4849 0.8401 0.0041 28 1 3.8785 -0.6825 0.8776 29 1 3.6530 0.5578 -1.2577 30 1 5.1063 -0.4702 -1.2665 31 1 3.8603 -0.6718 -3.4008 32 1 2.4110 -1.1881 -2.5060 33 1 5.1010 -2.6307 -2.5208 34 1 2.5666 -3.0504 -3.9217 35 1 4.4346 -2.0011 -5.0687 36 1 5.3988 -3.4350 -4.6417 37 1 3.8120 -4.8744 -5.8894 38 1 2.8474 -3.4409 -6.3168 39 1 4.8051 -2.4755 -7.4940 40 1 5.7692 -3.9094 -7.0663 41 1 5.0883 -2.9941 -9.8682 42 1 6.0514 -4.4285 -9.4404 43 1 5.5154 -6.6062 -10.3638 44 1 4.4857 -7.8526 -12.2211 45 1 2.8196 -6.7564 -13.6653 46 1 2.1766 -4.4167 -13.2467 47 1 3.1993 -3.1732 -11.3837 48 1 3.8699 -4.3823 -1.2703 49 1 2.4162 -3.3548 -1.2620 50 1 5.1114 -2.6367 -0.0223 51 1 3.6622 -3.1529 0.8725 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173330239.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:21 Heat of formation + Delta-G solvation = -58.330888 kcal Electronic energy + Delta-G solvation = -25571.474226 eV Core-core repulsion = 22047.858184 eV Total energy + Delta-G solvation = -3523.616043 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.31444 -40.02339 -38.76125 -36.80165 -34.45070 -33.41272 -32.28991 -31.80775 -31.53782 -29.70428 -27.16876 -26.43957 -24.82073 -23.49745 -23.46356 -22.56882 -22.20590 -22.01021 -20.47381 -18.24065 -17.85632 -17.51114 -17.31644 -17.05273 -16.41088 -16.20248 -16.06665 -15.75085 -15.44209 -15.23874 -14.90043 -14.72751 -14.43687 -14.28445 -13.92421 -13.85686 -13.64248 -13.58892 -13.26810 -13.04648 -12.91237 -12.72282 -12.40894 -12.28136 -12.10893 -12.01205 -11.84094 -11.82289 -11.79108 -11.68660 -11.57176 -10.98578 -10.81797 -10.69190 -10.59258 -10.56970 -9.84214 -9.77809 -9.21404 -8.22554 -6.21645 0.32141 0.48060 1.29135 1.35169 1.44796 2.35671 2.51548 3.01951 3.13778 3.41537 3.87259 3.89739 3.96942 4.01082 4.08078 4.13494 4.21906 4.27139 4.31771 4.34203 4.36670 4.44011 4.48389 4.57765 4.61846 4.63374 4.67093 4.74047 4.75781 4.76690 4.80611 4.86957 4.95427 5.05629 5.06298 5.13683 5.17405 5.22601 5.26194 5.49015 5.49646 5.51047 5.53226 5.59457 5.61497 5.64907 5.76767 5.86030 6.07857 6.20395 6.27172 6.41589 6.48607 6.84376 7.41322 8.94115 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.023114 B = 0.001870 C = 0.001816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.109787 B =14972.590614 C =15414.533132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.008 3.992 3 Si 0.944 3.056 4 H -0.273 1.273 5 H -0.306 1.306 6 H -0.248 1.248 7 C -0.487 4.487 8 H 0.036 0.964 9 C 0.001 3.999 10 C -0.114 4.114 11 C -0.128 4.128 12 C 0.108 3.892 13 N -0.691 5.691 14 C 0.066 3.934 15 C -0.109 4.109 16 C 0.067 3.933 17 O -0.405 6.405 18 C 0.100 3.900 19 C -0.110 4.110 20 C -0.113 4.113 21 C -0.131 4.131 22 C -0.122 4.122 23 C -0.133 4.133 24 C -0.116 4.116 25 C -0.091 4.091 26 C -0.094 4.094 27 H 0.260 0.740 28 H 0.020 0.980 29 H 0.027 0.973 30 H 0.069 0.931 31 H 0.054 0.946 32 H 0.043 0.957 33 H 0.085 0.915 34 H 0.337 0.663 35 H 0.032 0.968 36 H 0.082 0.918 37 H 0.070 0.930 38 H 0.057 0.943 39 H 0.057 0.943 40 H 0.065 0.935 41 H 0.066 0.934 42 H 0.070 0.930 43 H 0.132 0.868 44 H 0.143 0.857 45 H 0.144 0.856 46 H 0.140 0.860 47 H 0.128 0.872 48 H 0.064 0.936 49 H 0.038 0.962 50 H 0.068 0.932 51 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.551 -9.724 -24.906 30.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.188 4.188 3 Si 0.772 3.228 4 H -0.199 1.199 5 H -0.235 1.235 6 H -0.172 1.172 7 C -0.526 4.526 8 H 0.055 0.945 9 C -0.018 4.018 10 C -0.152 4.152 11 C -0.167 4.167 12 C -0.002 4.002 13 N -0.320 5.320 14 C -0.063 4.063 15 C -0.147 4.147 16 C -0.010 4.010 17 O -0.325 6.325 18 C 0.025 3.975 19 C -0.110 4.110 20 C -0.131 4.131 21 C -0.149 4.149 22 C -0.140 4.140 23 C -0.151 4.151 24 C -0.134 4.134 25 C -0.129 4.129 26 C -0.132 4.132 27 H 0.069 0.931 28 H 0.038 0.962 29 H 0.045 0.955 30 H 0.087 0.913 31 H 0.072 0.928 32 H 0.062 0.938 33 H 0.103 0.897 34 H 0.155 0.845 35 H 0.050 0.950 36 H 0.101 0.899 37 H 0.088 0.912 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.088 0.912 43 H 0.150 0.850 44 H 0.161 0.839 45 H 0.162 0.838 46 H 0.158 0.842 47 H 0.146 0.854 48 H 0.083 0.917 49 H 0.056 0.944 50 H 0.087 0.913 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 14.561 -10.351 -24.751 30.525 hybrid contribution -0.634 2.142 0.101 2.236 sum 13.927 -8.209 -24.650 29.479 Atomic orbital electron populations 1.70063 1.08059 1.27394 1.54062 1.25802 0.95254 1.02552 0.95187 0.85917 0.79183 0.79557 0.78106 1.19940 1.23474 1.17225 1.21268 0.91235 0.92463 1.47594 0.94536 1.19247 0.94099 0.94767 0.93695 1.21748 0.99289 0.97446 0.96743 1.21990 1.00628 0.97307 0.96752 1.21380 0.98926 0.90095 0.89807 1.60633 1.06109 1.61351 1.03930 1.21846 0.97358 0.97758 0.89349 1.21359 0.99108 1.01761 0.92440 1.22468 0.97367 0.96269 0.84906 1.87929 1.52475 1.73467 1.18623 1.21410 0.93988 0.99052 0.83082 1.19837 0.99065 0.95437 0.96622 1.21321 1.00255 0.93591 0.97959 1.21483 0.97159 1.00946 0.95342 1.21558 0.97334 0.95176 0.99939 1.21468 1.00335 0.95275 0.97998 1.21310 0.95907 1.00765 0.95421 1.21302 1.00034 0.98110 0.93454 1.21330 0.99282 0.95321 0.97240 0.93091 0.96222 0.95506 0.91286 0.92761 0.93833 0.89672 0.84500 0.95001 0.89915 0.91172 0.92405 0.92520 0.91658 0.91595 0.91152 0.85037 0.83922 0.83826 0.84169 0.85444 0.91702 0.94358 0.91311 0.93539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.01 13.96 21.45 0.30 -59.72 16 2 C 0.01 0.45 5.45 84.66 0.46 0.91 16 3 Si 0.94 45.55 24.37 68.60 1.67 47.22 16 4 H -0.27 -12.66 6.87 99.48 0.68 -11.97 16 5 H -0.31 -14.98 7.11 99.48 0.71 -14.27 16 6 H -0.25 -11.08 6.53 99.48 0.65 -10.43 16 7 C -0.49 -26.97 7.19 25.60 0.18 -26.79 16 8 H 0.04 2.26 6.95 -2.91 -0.02 2.24 16 9 C 0.00 0.03 2.18 -11.54 -0.03 0.01 16 10 C -0.11 -4.55 4.94 30.59 0.15 -4.40 16 11 C -0.13 -4.74 4.95 30.60 0.15 -4.59 16 12 C 0.11 3.43 2.47 44.91 0.11 3.54 16 13 N -0.69 -19.99 6.25 -491.58 -3.07 -23.06 16 14 C 0.07 1.50 5.48 86.31 0.47 1.97 16 15 C -0.11 -2.35 5.84 30.60 0.18 -2.17 16 16 C 0.07 1.22 5.94 71.98 0.43 1.65 16 17 O -0.40 -8.85 10.33 -148.98 -1.54 -10.38 16 18 C 0.10 1.68 6.06 71.24 0.43 2.11 16 19 C -0.11 -1.97 5.51 -19.86 -0.11 -2.08 16 20 C -0.11 -1.84 9.70 22.27 0.22 -1.63 16 21 C -0.13 -1.83 10.05 22.27 0.22 -1.61 16 22 C -0.12 -1.62 10.05 22.27 0.22 -1.40 16 23 C -0.13 -1.93 10.05 22.27 0.22 -1.71 16 24 C -0.12 -1.98 9.70 22.27 0.22 -1.76 16 25 C -0.09 -3.28 5.30 30.59 0.16 -3.12 16 26 C -0.09 -3.51 5.41 30.59 0.17 -3.34 16 27 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 28 H 0.02 0.90 7.20 -2.39 -0.02 0.88 16 29 H 0.03 1.15 3.27 -2.39 -0.01 1.14 16 30 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 31 H 0.05 1.78 7.45 -2.39 -0.02 1.76 16 32 H 0.04 1.96 7.21 -2.38 -0.02 1.94 16 33 H 0.09 2.40 7.80 -2.39 -0.02 2.38 16 34 H 0.34 10.52 8.47 -89.69 -0.76 9.76 16 35 H 0.03 0.72 7.44 -2.39 -0.02 0.70 16 36 H 0.08 1.68 8.05 -2.39 -0.02 1.66 16 37 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.07 0.94 8.09 -2.39 -0.02 0.92 16 42 H 0.07 0.95 8.08 -2.39 -0.02 0.93 16 43 H 0.13 1.77 8.06 -2.91 -0.02 1.74 16 44 H 0.14 1.30 8.06 -2.91 -0.02 1.28 16 45 H 0.14 1.18 8.06 -2.91 -0.02 1.15 16 46 H 0.14 1.43 8.06 -2.91 -0.02 1.40 16 47 H 0.13 1.90 8.06 -2.91 -0.02 1.88 16 48 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 49 H 0.04 1.66 6.62 -2.38 -0.02 1.64 16 50 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 51 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -67.04 392.05 1.27 -65.76 By element: Atomic # 1 Polarization: 24.54 SS G_CDS: 0.05 Total: 24.59 kcal Atomic # 6 Polarization: -48.28 SS G_CDS: 3.87 Total: -44.41 kcal Atomic # 7 Polarization: -80.00 SS G_CDS: -2.77 Total: -82.78 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: -1.54 Total: -10.38 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 1.67 Total: 47.22 kcal Total: -67.04 1.27 -65.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173330239.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.431 kcal (2) G-P(sol) polarization free energy of solvation -67.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds