Wall clock time and date at job start Tue Mar 31 2020 12:09:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35900 * 117.00109 * 2 1 4 4 C 1.38747 * 120.05574 * 359.97438 * 3 2 1 5 5 C 1.38126 * 119.94480 * 179.97438 * 4 3 2 6 6 C 1.38290 * 120.05241 * 359.97438 * 5 4 3 7 7 C 1.38245 * 120.11170 * 0.02562 * 6 5 4 8 8 C 1.38166 * 120.05847 * 359.97438 * 7 6 5 9 9 C 1.50698 * 120.02921 * 179.97438 * 8 7 6 10 10 C 1.52998 * 109.46997 * 120.00116 * 9 8 7 11 11 C 1.53004 * 109.47026 * 240.00152 * 9 8 7 12 12 N 1.46900 * 109.47062 * 0.02562 * 9 8 7 13 13 C 1.46901 * 111.00120 * 181.13917 * 12 9 8 14 14 C 1.53006 * 109.46599 * 253.50188 * 13 12 9 15 15 C 1.52993 * 109.47351 * 299.99751 * 14 13 12 16 16 C 1.53008 * 109.46983 * 300.00489 * 15 14 13 17 17 C 1.50694 * 109.46952 * 180.02562 * 16 15 14 18 18 H 1.08000 * 119.99998 * 239.99527 * 17 16 15 19 19 C 1.37874 * 120.00351 * 60.00031 * 17 16 15 20 20 N 1.31511 * 120.00128 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00185 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.47106 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.47138 * 119.99752 * 21 19 17 24 24 H 1.48494 * 109.47286 * 239.99868 * 21 19 17 25 25 C 1.52997 * 109.47433 * 59.99736 * 16 15 14 26 26 C 1.52997 * 109.47533 * 133.50204 * 13 12 9 27 27 H 1.09001 * 109.47298 * 300.01055 * 1 2 3 28 28 H 1.09008 * 109.46808 * 60.00299 * 1 2 3 29 29 H 1.09000 * 109.47809 * 180.02562 * 1 2 3 30 30 H 1.08006 * 120.02977 * 0.25629 * 4 3 2 31 31 H 1.07996 * 119.97622 * 179.97438 * 5 4 3 32 32 H 1.07999 * 119.94109 * 179.97438 * 6 5 4 33 33 H 1.08000 * 119.97051 * 180.02562 * 7 6 5 34 34 H 1.08989 * 109.47264 * 61.67977 * 10 9 8 35 35 H 1.09003 * 109.47004 * 181.68151 * 10 9 8 36 36 H 1.09003 * 109.46910 * 301.67498 * 10 9 8 37 37 H 1.08999 * 109.46792 * 67.19887 * 11 9 8 38 38 H 1.08995 * 109.47093 * 187.20364 * 11 9 8 39 39 H 1.09002 * 109.46844 * 307.20621 * 11 9 8 40 40 H 1.00896 * 111.00446 * 57.17838 * 12 9 8 41 41 H 1.09004 * 109.47079 * 13.49364 * 13 12 9 42 42 H 1.09002 * 109.46760 * 59.99944 * 14 13 12 43 43 H 1.08999 * 109.46706 * 179.97438 * 14 13 12 44 44 H 1.08993 * 109.47141 * 180.02562 * 15 14 13 45 45 H 1.08999 * 109.47203 * 59.99680 * 15 14 13 46 46 H 1.09008 * 109.46664 * 299.99512 * 16 15 14 47 47 H 0.96998 * 120.00640 * 180.02562 * 20 19 17 48 48 H 1.08993 * 109.47446 * 180.02562 * 25 16 15 49 49 H 1.08995 * 109.46795 * 59.99968 * 25 16 15 50 50 H 1.08999 * 109.46988 * 180.02562 * 26 13 12 51 51 H 1.09002 * 109.46896 * 299.99887 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2915 2.3753 -0.0005 5 6 1.9210 3.6047 0.0000 6 6 3.3021 3.6757 0.0016 7 6 4.0561 2.5169 0.0021 8 6 3.4312 1.2847 0.0016 9 6 4.2537 0.0220 0.0016 10 6 3.9273 -0.7993 1.2505 11 6 3.9282 -0.7987 -1.2480 12 7 5.6815 0.3677 0.0029 13 6 6.5158 -0.8411 -0.0244 14 6 7.1481 -1.0554 1.3524 15 6 8.0141 0.1542 1.7098 16 6 9.1169 0.3192 0.6621 17 6 9.9703 1.5101 1.0145 18 1 10.0535 2.3376 0.3255 19 6 10.6451 1.5434 2.2164 20 7 10.5435 0.5360 3.0556 21 14 11.7035 3.0195 2.6528 22 1 11.6513 4.0101 1.5477 23 1 11.1940 3.6423 3.9009 24 1 13.1070 2.5793 2.8565 25 6 8.4848 0.5335 -0.7146 26 6 7.6187 -0.6762 -1.0719 27 1 -0.3634 0.5140 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3635 -1.0276 0.0005 30 1 0.2128 2.3204 0.0032 31 1 1.3342 4.5114 -0.0008 32 1 3.7924 4.6379 0.0016 33 1 5.1345 2.5750 0.0038 34 1 2.8745 -1.0811 1.2351 35 1 4.5438 -1.6981 1.2657 36 1 4.1311 -0.2038 2.1405 37 1 4.2781 -0.2672 -2.1330 38 1 4.4243 -1.7673 -1.1860 39 1 2.8503 -0.9462 -1.3152 40 1 5.9122 0.9486 0.7949 41 1 5.8988 -1.7029 -0.2789 42 1 6.3623 -1.1729 2.0987 43 1 7.7668 -1.9525 1.3323 44 1 8.4648 0.0013 2.6903 45 1 7.3950 1.0511 1.7298 46 1 9.7361 -0.5778 0.6420 47 1 11.0179 0.5595 3.9014 48 1 9.2704 0.6505 -1.4609 49 1 7.8657 1.4303 -0.6944 50 1 8.2374 -1.5733 -1.0924 51 1 7.1682 -0.5235 -2.0527 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173331276.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:05 Heat of formation + Delta-G solvation = -35.522754 kcal Electronic energy + Delta-G solvation = -28321.614217 eV Core-core repulsion = 24798.987209 eV Total energy + Delta-G solvation = -3522.627008 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.55912 -40.11556 -38.28583 -37.15882 -34.73478 -32.34472 -31.26882 -31.19855 -30.37776 -29.36403 -28.08286 -27.98490 -26.49582 -23.96162 -23.05052 -22.89377 -22.24170 -20.92322 -19.14090 -18.91097 -18.34588 -17.55439 -16.98019 -16.58382 -16.55833 -15.96277 -15.70886 -15.29538 -15.18876 -14.92354 -14.56572 -14.42616 -14.41742 -14.18430 -13.82671 -13.62877 -13.27831 -13.17036 -12.97473 -12.86867 -12.76141 -12.69057 -12.50338 -12.43486 -12.27719 -12.16207 -12.07657 -11.84729 -11.81953 -11.67233 -11.48616 -11.31652 -11.03207 -10.53848 -10.49068 -10.25804 -9.71219 -9.19613 -8.94139 -8.03090 -6.16244 0.47500 0.58202 1.39591 1.41931 1.53045 2.45856 2.46164 2.89773 3.22373 3.28442 3.74517 4.03313 4.13336 4.15517 4.18024 4.24920 4.31913 4.37855 4.39346 4.46941 4.51796 4.63688 4.69161 4.71356 4.79689 4.80297 4.84200 4.90604 4.91646 4.99494 5.01619 5.04382 5.08255 5.15547 5.21410 5.30293 5.34195 5.36870 5.40223 5.51234 5.53927 5.58761 5.60279 5.70075 5.72407 5.79653 5.96596 6.14259 6.28697 6.41183 6.50969 6.54187 6.61367 6.97242 7.51326 9.00185 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.017215 B = 0.003673 C = 0.003317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.091854 B = 7621.819541 C = 8439.985228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.321 6.321 3 C 0.123 3.877 4 C -0.213 4.213 5 C -0.089 4.089 6 C -0.168 4.168 7 C -0.085 4.085 8 C -0.114 4.114 9 C 0.161 3.839 10 C -0.169 4.169 11 C -0.128 4.128 12 N -0.672 5.672 13 C 0.101 3.899 14 C -0.134 4.134 15 C -0.093 4.093 16 C 0.050 3.950 17 C -0.528 4.528 18 H 0.047 0.953 19 C 0.012 3.988 20 N -0.917 5.917 21 Si 0.948 3.052 22 H -0.269 1.269 23 H -0.281 1.281 24 H -0.283 1.283 25 C -0.092 4.092 26 C -0.095 4.095 27 H 0.061 0.939 28 H 0.063 0.937 29 H 0.115 0.885 30 H 0.150 0.850 31 H 0.147 0.853 32 H 0.132 0.868 33 H 0.126 0.874 34 H 0.076 0.924 35 H 0.058 0.942 36 H 0.037 0.963 37 H 0.050 0.950 38 H 0.059 0.941 39 H 0.074 0.926 40 H 0.339 0.661 41 H 0.081 0.919 42 H 0.054 0.946 43 H 0.048 0.952 44 H 0.052 0.948 45 H 0.030 0.970 46 H -0.015 1.015 47 H 0.257 0.743 48 H 0.030 0.970 49 H 0.053 0.947 50 H 0.049 0.951 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.223 -0.436 -6.566 24.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.235 6.235 3 C 0.078 3.922 4 C -0.231 4.231 5 C -0.106 4.106 6 C -0.186 4.186 7 C -0.103 4.103 8 C -0.115 4.115 9 C 0.070 3.930 10 C -0.228 4.228 11 C -0.185 4.185 12 N -0.305 5.305 13 C -0.008 4.008 14 C -0.172 4.172 15 C -0.131 4.131 16 C 0.031 3.969 17 C -0.566 4.566 18 H 0.065 0.935 19 C -0.186 4.186 20 N -0.557 5.557 21 Si 0.774 3.226 22 H -0.193 1.193 23 H -0.207 1.207 24 H -0.209 1.209 25 C -0.130 4.130 26 C -0.133 4.133 27 H 0.079 0.921 28 H 0.082 0.918 29 H 0.133 0.867 30 H 0.167 0.833 31 H 0.165 0.835 32 H 0.150 0.850 33 H 0.144 0.856 34 H 0.095 0.905 35 H 0.077 0.923 36 H 0.056 0.944 37 H 0.070 0.930 38 H 0.078 0.922 39 H 0.093 0.907 40 H 0.160 0.840 41 H 0.099 0.901 42 H 0.073 0.927 43 H 0.067 0.933 44 H 0.070 0.930 45 H 0.049 0.951 46 H 0.004 0.996 47 H 0.067 0.933 48 H 0.049 0.951 49 H 0.072 0.928 50 H 0.068 0.932 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -23.051 -0.589 -7.087 24.123 hybrid contribution 0.909 0.597 1.572 1.912 sum -22.142 0.007 -5.515 22.818 Atomic orbital electron populations 1.23307 0.77261 1.05242 1.02021 1.86117 1.22639 1.26259 1.88471 1.18842 0.91251 0.85139 0.97017 1.21446 1.00925 0.91874 1.08888 1.21228 0.94360 0.97959 0.97094 1.21312 0.94646 0.98559 1.04100 1.21084 1.00685 0.91560 0.96952 1.19244 0.90786 0.95233 1.06286 1.19606 0.86831 0.91233 0.95350 1.22542 1.03083 0.99931 0.97203 1.21850 1.02097 0.98683 0.95901 1.60857 1.02305 1.18039 1.49277 1.21432 0.93430 0.92265 0.93716 1.22141 0.98717 0.98908 0.97462 1.21292 0.95712 0.94855 1.01244 1.18585 0.92438 0.93984 0.91881 1.21667 1.27856 1.04601 1.02500 0.93479 1.25693 0.97888 0.98415 0.96584 1.70031 1.43710 1.32124 1.09813 0.85662 0.78635 0.80232 0.78059 1.19307 1.20698 1.20889 1.21349 0.97031 0.98063 0.96555 1.21470 0.96081 0.97525 0.98233 0.92074 0.91794 0.86698 0.83255 0.83547 0.85020 0.85648 0.90510 0.92298 0.94409 0.93048 0.92238 0.90684 0.83968 0.90140 0.92727 0.93340 0.92973 0.95111 0.99648 0.93344 0.95122 0.92785 0.93188 0.91645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.81 113.37 1.11 1.30 16 2 O -0.32 -6.40 6.16 -92.43 -0.57 -6.97 16 3 C 0.12 2.85 6.25 22.50 0.14 2.99 16 4 C -0.21 -4.11 9.04 22.37 0.20 -3.91 16 5 C -0.09 -1.73 10.04 22.26 0.22 -1.51 16 6 C -0.17 -3.96 10.04 22.28 0.22 -3.74 16 7 C -0.08 -2.36 9.15 22.25 0.20 -2.16 16 8 C -0.11 -3.09 4.78 -19.77 -0.09 -3.18 16 9 C 0.16 4.38 0.66 2.78 0.00 4.38 16 10 C -0.17 -4.48 7.36 71.98 0.53 -3.95 16 11 C -0.13 -3.18 8.06 71.98 0.58 -2.60 16 12 N -0.67 -21.13 4.14 -451.96 -1.87 -23.00 16 13 C 0.10 3.30 1.88 44.92 0.08 3.38 16 14 C -0.13 -5.08 5.25 30.59 0.16 -4.92 16 15 C -0.09 -4.38 4.79 30.59 0.15 -4.24 16 16 C 0.05 2.52 2.10 -11.54 -0.02 2.50 16 17 C -0.53 -29.87 8.56 25.60 0.22 -29.65 16 18 H 0.05 2.65 7.74 -2.91 -0.02 2.63 16 19 C 0.01 0.69 5.30 84.65 0.45 1.14 16 20 N -0.92 -53.99 11.32 21.45 0.24 -53.75 16 21 Si 0.95 44.76 29.54 68.60 2.03 46.79 16 22 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 23 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 24 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 25 C -0.09 -3.95 4.99 30.59 0.15 -3.80 16 26 C -0.09 -3.34 5.64 30.59 0.17 -3.17 16 27 H 0.06 0.60 7.66 -2.39 -0.02 0.58 16 28 H 0.06 0.60 7.67 -2.38 -0.02 0.58 16 29 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.15 1.99 6.30 -2.91 -0.02 1.97 16 31 H 0.15 1.99 8.06 -2.91 -0.02 1.97 16 32 H 0.13 2.71 8.06 -2.91 -0.02 2.68 16 33 H 0.13 3.87 6.43 -2.91 -0.02 3.85 16 34 H 0.08 1.88 6.19 -2.39 -0.01 1.86 16 35 H 0.06 1.56 5.91 -2.39 -0.01 1.54 16 36 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.06 1.41 6.32 -2.39 -0.02 1.39 16 39 H 0.07 1.73 5.97 -2.39 -0.01 1.71 16 40 H 0.34 11.90 5.08 -89.70 -0.46 11.44 16 41 H 0.08 2.35 4.90 -2.39 -0.01 2.33 16 42 H 0.05 1.93 6.58 -2.39 -0.02 1.91 16 43 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 44 H 0.05 2.85 6.07 -2.39 -0.01 2.83 16 45 H 0.03 1.43 6.30 -2.39 -0.02 1.42 16 46 H -0.01 -0.84 8.14 -2.38 -0.02 -0.86 16 47 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 48 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 49 H 0.05 2.33 7.60 -2.39 -0.02 2.31 16 50 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 51 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 Total: -1.00 -63.13 372.47 4.78 -58.36 By element: Atomic # 1 Polarization: 29.26 SS G_CDS: 0.46 Total: 29.73 kcal Atomic # 6 Polarization: -55.63 SS G_CDS: 4.48 Total: -51.14 kcal Atomic # 7 Polarization: -75.13 SS G_CDS: -1.63 Total: -76.75 kcal Atomic # 8 Polarization: -6.40 SS G_CDS: -0.57 Total: -6.97 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -63.13 4.78 -58.36 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173331276.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.835 kcal (2) G-P(sol) polarization free energy of solvation -63.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds