Wall clock time and date at job start Tue Mar 31 2020 11:10:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86793 * 119.99794 * 2 1 4 4 H 1.48503 * 109.47473 * 269.99666 * 3 2 1 5 5 H 1.48496 * 109.47558 * 30.00187 * 3 2 1 6 6 H 1.48507 * 109.46889 * 150.00021 * 3 2 1 7 7 C 1.37883 * 119.99907 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99761 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99529 * 179.97438 * 7 2 1 10 10 C 1.52998 * 109.46598 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47163 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.46664 * 300.00214 * 11 10 9 13 13 N 1.46899 * 109.46765 * 180.02562 * 12 11 10 14 14 C 1.46901 * 111.00359 * 155.00077 * 13 12 11 15 15 C 1.53001 * 109.47666 * 179.97438 * 14 13 12 16 16 C 1.52995 * 109.47181 * 179.97438 * 15 14 13 17 17 C 1.53001 * 109.47181 * 180.02562 * 16 15 14 18 18 O 1.42902 * 109.47386 * 180.02562 * 17 16 15 19 19 C 1.35898 * 116.99694 * 180.02562 * 18 17 16 20 20 C 1.38735 * 120.05254 * 179.97438 * 19 18 17 21 21 C 1.38144 * 119.94607 * 179.97438 * 20 19 18 22 22 C 1.38266 * 120.05233 * 0.02562 * 21 20 19 23 23 C 1.38269 * 120.11595 * 359.95530 * 22 21 20 24 24 C 1.38142 * 120.04935 * 0.04230 * 23 22 21 25 25 C 1.52998 * 109.47505 * 59.99996 * 12 11 10 26 26 C 1.52993 * 109.47182 * 299.99736 * 9 7 2 27 27 H 0.96998 * 120.00152 * 0.02562 * 1 2 3 28 28 H 1.08992 * 109.46887 * 60.00154 * 9 7 2 29 29 H 1.09003 * 109.47456 * 60.00053 * 10 9 7 30 30 H 1.09002 * 109.47479 * 300.00134 * 10 9 7 31 31 H 1.08993 * 109.47096 * 180.02562 * 11 10 9 32 32 H 1.08998 * 109.47173 * 60.00057 * 11 10 9 33 33 H 1.09009 * 109.47278 * 299.99337 * 12 11 10 34 34 H 1.00907 * 111.00084 * 278.94516 * 13 12 11 35 35 H 1.09004 * 109.47302 * 59.98958 * 14 13 12 36 36 H 1.09009 * 109.47045 * 299.99548 * 14 13 12 37 37 H 1.08999 * 109.46920 * 59.99505 * 15 14 13 38 38 H 1.08993 * 109.46801 * 299.99687 * 15 14 13 39 39 H 1.08999 * 109.47370 * 60.00060 * 16 15 14 40 40 H 1.09006 * 109.47017 * 299.99902 * 16 15 14 41 41 H 1.08999 * 109.46920 * 59.99785 * 17 16 15 42 42 H 1.08998 * 109.47220 * 300.00155 * 17 16 15 43 43 H 1.08002 * 120.02704 * 359.70561 * 20 19 18 44 44 H 1.08001 * 119.97447 * 179.97438 * 21 20 19 45 45 H 1.08000 * 119.94089 * 179.97438 * 22 21 20 46 46 H 1.07992 * 119.97577 * 180.02562 * 23 22 21 47 47 H 1.08005 * 120.02748 * 179.97438 * 24 23 22 48 48 H 1.08998 * 109.47030 * 59.99729 * 25 12 11 49 49 H 1.08998 * 109.47028 * 179.97438 * 25 12 11 50 50 H 1.08998 * 109.47462 * 300.00433 * 26 9 7 51 51 H 1.09005 * 109.47182 * 60.00315 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 6 4.0215 -2.6365 -0.0010 11 6 5.5516 -2.6366 -0.0009 12 6 6.0615 -1.9154 -1.2502 13 7 7.5305 -1.9159 -1.2505 14 6 8.0568 -1.7964 -2.6167 15 6 9.5863 -1.8000 -2.5764 16 6 10.1343 -1.6761 -3.9994 17 6 11.6638 -1.6803 -3.9591 18 8 12.1757 -1.5641 -5.2882 19 6 13.5272 -1.5527 -5.4299 20 6 14.0926 -1.4429 -6.6921 21 6 15.4667 -1.4311 -6.8336 22 6 16.2784 -1.5291 -5.7186 23 6 15.7175 -1.6382 -4.4595 24 6 14.3440 -1.6505 -4.3128 25 6 5.5516 -0.4729 -1.2503 26 6 4.0210 -0.4725 -1.2504 27 1 -0.4850 0.8400 -0.0004 28 1 3.8752 -0.6804 0.8888 29 1 3.6579 -3.1506 -0.8907 30 1 3.6585 -3.1502 0.8892 31 1 5.9148 -3.6642 -0.0013 32 1 5.9149 -2.1227 0.8890 33 1 5.6982 -2.4293 -2.1402 34 1 7.8925 -1.1835 -0.6583 35 1 7.7075 -0.8641 -3.0605 36 1 7.7069 -2.6373 -3.2157 37 1 9.9359 -2.7321 -2.1325 38 1 9.9358 -0.9589 -1.9776 39 1 9.7848 -0.7442 -4.4436 40 1 9.7847 -2.5175 -4.5979 41 1 12.0130 -2.6125 -3.5151 42 1 12.0138 -0.8393 -3.3605 43 1 13.4589 -1.3712 -7.5637 44 1 15.9073 -1.3461 -7.8160 45 1 17.3525 -1.5201 -5.8313 46 1 16.3537 -1.7142 -3.5902 47 1 13.9062 -1.7361 -3.3292 48 1 5.9149 0.0410 -0.3604 49 1 5.9153 0.0410 -2.1401 50 1 3.6574 -0.9861 -2.1403 51 1 3.6577 0.5552 -1.2500 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173332447.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:51 Heat of formation + Delta-G solvation = -41.878473 kcal Electronic energy + Delta-G solvation = -25237.573482 eV Core-core repulsion = 21714.670870 eV Total energy + Delta-G solvation = -3522.902612 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.47650 -38.63613 -37.91686 -36.06873 -33.85415 -32.18483 -31.41690 -30.40307 -30.12276 -29.35919 -27.21163 -24.42711 -23.39993 -22.78087 -22.09205 -21.82121 -21.40310 -20.53227 -19.00845 -18.57582 -16.77096 -16.62028 -16.52553 -16.15360 -15.71806 -15.32115 -14.95146 -14.71597 -14.34758 -13.96628 -13.82305 -13.69324 -13.34603 -13.14930 -12.98963 -12.75774 -12.52871 -12.39281 -12.21011 -11.96574 -11.89045 -11.66798 -11.58117 -11.25852 -11.19171 -11.09268 -10.88142 -10.79185 -10.57196 -10.39426 -10.04279 -9.82508 -9.55385 -9.42735 -9.11450 -8.88639 -8.60418 -8.52132 -8.17283 -6.05228 -4.03465 0.91748 1.04150 2.76065 3.26593 3.37378 3.38293 3.39943 4.17200 4.37500 4.42276 4.46428 4.49035 4.59677 4.71208 4.83868 4.89874 4.97040 4.99229 5.12781 5.16204 5.20658 5.26659 5.31686 5.37682 5.43641 5.55110 5.58703 5.66119 5.70184 5.89419 5.90384 5.94835 5.99159 5.99380 6.05459 6.11808 6.16381 6.22419 6.24708 6.36714 6.41394 6.53762 6.64105 6.75699 6.92900 7.02886 7.03971 7.19293 7.34110 7.48163 7.60451 7.81760 8.56206 8.99918 9.58094 11.08311 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.032063 B = 0.001662 C = 0.001626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.081818 B =16847.138875 C =17221.168264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.067 3.933 3 Si 0.888 3.112 4 H -0.281 1.281 5 H -0.299 1.299 6 H -0.266 1.266 7 C -0.512 4.512 8 H 0.073 0.927 9 C 0.014 3.986 10 C -0.099 4.099 11 C -0.104 4.104 12 C 0.092 3.908 13 N -0.688 5.688 14 C 0.059 3.941 15 C -0.113 4.113 16 C -0.118 4.118 17 C 0.061 3.939 18 O -0.316 6.316 19 C 0.132 3.868 20 C -0.155 4.155 21 C -0.081 4.081 22 C -0.162 4.162 23 C -0.081 4.081 24 C -0.210 4.210 25 C -0.148 4.148 26 C -0.115 4.115 27 H 0.262 0.738 28 H 0.025 0.975 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.054 0.946 33 H 0.074 0.926 34 H 0.337 0.663 35 H 0.030 0.970 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.063 0.937 39 H 0.073 0.927 40 H 0.076 0.924 41 H 0.064 0.936 42 H 0.062 0.938 43 H 0.130 0.870 44 H 0.128 0.872 45 H 0.123 0.877 46 H 0.124 0.876 47 H 0.128 0.872 48 H 0.056 0.944 49 H 0.045 0.955 50 H 0.058 0.942 51 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.527 -3.073 -10.218 33.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.134 4.134 3 Si 0.719 3.281 4 H -0.208 1.208 5 H -0.227 1.227 6 H -0.191 1.191 7 C -0.550 4.550 8 H 0.091 0.909 9 C -0.005 4.005 10 C -0.137 4.137 11 C -0.142 4.142 12 C -0.018 4.018 13 N -0.318 5.318 14 C -0.071 4.071 15 C -0.151 4.151 16 C -0.156 4.156 17 C -0.015 4.015 18 O -0.229 6.229 19 C 0.087 3.913 20 C -0.174 4.174 21 C -0.100 4.100 22 C -0.181 4.181 23 C -0.099 4.099 24 C -0.229 4.229 25 C -0.187 4.187 26 C -0.153 4.153 27 H 0.072 0.928 28 H 0.043 0.957 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.092 0.908 34 H 0.154 0.846 35 H 0.049 0.951 36 H 0.090 0.910 37 H 0.092 0.908 38 H 0.081 0.919 39 H 0.092 0.908 40 H 0.094 0.906 41 H 0.082 0.918 42 H 0.080 0.920 43 H 0.148 0.852 44 H 0.146 0.854 45 H 0.141 0.859 46 H 0.142 0.858 47 H 0.146 0.854 48 H 0.074 0.926 49 H 0.064 0.936 50 H 0.077 0.923 51 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 31.254 -3.656 -10.344 33.124 hybrid contribution 0.239 2.030 -0.050 2.045 sum 31.494 -1.626 -10.394 33.204 Atomic orbital electron populations 1.69906 1.06279 1.26809 1.51200 1.25040 0.94671 0.99016 0.94625 0.86828 0.79872 0.83679 0.77693 1.20826 1.22665 1.19143 1.21120 0.89085 0.94369 1.50399 0.90909 1.19149 0.96338 0.92087 0.92924 1.21443 0.92301 0.98882 1.01072 1.21540 0.96837 0.99361 0.96462 1.21596 0.85304 0.95291 0.99565 1.60694 1.08332 1.52924 1.09804 1.21928 0.93595 1.00461 0.91102 1.21454 0.95649 1.02900 0.95122 1.21506 0.91882 1.03909 0.98269 1.22879 0.95284 1.01358 0.81929 1.86070 1.18223 1.87852 1.30792 1.19064 0.82485 0.95549 0.94219 1.20494 0.95120 1.06436 0.95331 1.20990 0.92497 0.97442 0.99023 1.21081 0.99987 1.04382 0.92624 1.20979 0.94155 0.97104 0.97625 1.21314 0.94698 1.08755 0.98149 1.22302 0.99113 0.96951 1.00332 1.21919 0.91687 1.00193 1.01528 0.92778 0.95735 0.92853 0.92575 0.92499 0.92692 0.90754 0.84565 0.95138 0.90966 0.90754 0.91864 0.90783 0.90553 0.91825 0.91974 0.85195 0.85379 0.85939 0.85794 0.85411 0.92570 0.93627 0.92281 0.93759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.84 13.96 55.43 0.77 -27.07 16 2 C 0.07 1.96 5.45 -17.82 -0.10 1.86 16 3 Si 0.89 22.19 24.37 -169.99 -4.14 18.05 16 4 H -0.28 -6.86 6.87 56.52 0.39 -6.47 16 5 H -0.30 -7.50 7.11 56.52 0.40 -7.10 16 6 H -0.27 -6.36 6.53 56.52 0.37 -5.99 16 7 C -0.51 -14.36 9.14 -34.44 -0.31 -14.68 16 8 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 9 C 0.01 0.32 1.69 -91.78 -0.16 0.16 16 10 C -0.10 -1.94 5.14 -26.73 -0.14 -2.07 16 11 C -0.10 -1.68 5.53 -26.73 -0.15 -1.83 16 12 C 0.09 1.38 2.47 -67.72 -0.17 1.22 16 13 N -0.69 -8.57 6.25 -106.72 -0.67 -9.24 16 14 C 0.06 0.62 5.48 -3.82 -0.02 0.60 16 15 C -0.11 -0.93 5.47 -26.73 -0.15 -1.08 16 16 C -0.12 -0.92 5.58 -26.73 -0.15 -1.07 16 17 C 0.06 0.47 4.74 37.16 0.18 0.64 16 18 O -0.32 -3.13 10.14 -19.42 -0.20 -3.33 16 19 C 0.13 1.24 6.69 -39.22 -0.26 0.98 16 20 C -0.16 -1.30 9.99 -39.43 -0.39 -1.69 16 21 C -0.08 -0.56 10.04 -39.61 -0.40 -0.96 16 22 C -0.16 -1.08 10.04 -39.56 -0.40 -1.48 16 23 C -0.08 -0.57 10.04 -39.61 -0.40 -0.96 16 24 C -0.21 -1.70 9.04 -39.44 -0.36 -2.06 16 25 C -0.15 -2.50 5.17 -26.71 -0.14 -2.64 16 26 C -0.12 -2.44 4.69 -26.71 -0.13 -2.57 16 27 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 28 H 0.02 0.59 7.20 -51.93 -0.37 0.22 16 29 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 30 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.07 1.16 7.80 -51.92 -0.40 0.75 16 34 H 0.34 3.95 8.47 -39.29 -0.33 3.62 16 35 H 0.03 0.34 7.44 -51.93 -0.39 -0.05 16 36 H 0.07 0.79 8.06 -51.92 -0.42 0.37 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.06 0.44 7.66 -51.93 -0.40 0.04 16 42 H 0.06 0.43 7.66 -51.93 -0.40 0.03 16 43 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 44 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 45 H 0.12 0.55 8.06 -52.49 -0.42 0.13 16 46 H 0.12 0.61 8.06 -52.49 -0.42 0.18 16 47 H 0.13 0.85 6.30 -52.48 -0.33 0.52 16 48 H 0.06 0.95 8.13 -51.93 -0.42 0.52 16 49 H 0.04 0.71 7.45 -51.93 -0.39 0.32 16 50 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 51 H 0.04 1.01 3.27 -51.93 -0.17 0.84 16 LS Contribution 392.87 15.07 5.92 5.92 Total: -1.00 -30.88 392.87 -11.06 -41.94 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -9.12 Total: 1.35 kcal Atomic # 6 Polarization: -23.99 SS G_CDS: -3.63 Total: -27.62 kcal Atomic # 7 Polarization: -36.41 SS G_CDS: 0.11 Total: -36.31 kcal Atomic # 8 Polarization: -3.13 SS G_CDS: -0.20 Total: -3.33 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.14 Total: 18.05 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -30.88 -11.06 -41.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173332447.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.062 kcal (2) G-P(sol) polarization free energy of solvation -30.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds