Wall clock time and date at job start Tue Mar 31 2020 11:23:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38264 * 119.99658 * 2 1 4 4 C 1.38207 * 119.99773 * 179.97438 * 3 2 1 5 5 C 1.38265 * 120.00120 * 0.02791 * 4 3 2 6 6 C 1.38204 * 119.99820 * 359.95020 * 5 4 3 7 7 C 1.38207 * 120.00453 * 179.73034 * 2 1 3 8 8 C 1.50705 * 119.99892 * 359.97438 * 7 2 1 9 9 C 1.53001 * 109.47106 * 275.61947 * 8 7 2 10 10 H 1.08993 * 109.47167 * 54.69558 * 9 8 7 11 11 C 1.52995 * 109.47207 * 174.69957 * 9 8 7 12 12 O 1.42899 * 109.47141 * 54.99552 * 11 9 8 13 13 N 1.46898 * 109.46645 * 294.69693 * 9 8 7 14 14 C 1.46908 * 110.99833 * 156.04547 * 13 9 8 15 15 C 1.52999 * 109.47361 * 274.99956 * 14 13 9 16 16 C 1.53002 * 109.47020 * 300.00256 * 15 14 13 17 17 C 1.52996 * 109.47193 * 299.99584 * 16 15 14 18 18 C 1.50694 * 109.47296 * 180.02562 * 17 16 15 19 19 H 1.08003 * 120.00092 * 239.99856 * 18 17 16 20 20 C 1.37878 * 119.99988 * 60.00198 * 18 17 16 21 21 N 1.31515 * 120.00166 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00217 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47099 * 59.99914 * 22 20 18 24 24 H 1.48501 * 109.47361 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47082 * 300.00126 * 22 20 18 26 26 C 1.53001 * 109.47070 * 60.00018 * 17 16 15 27 27 C 1.52998 * 109.46854 * 154.99936 * 14 13 9 28 28 H 1.09003 * 109.47317 * 93.30093 * 1 2 3 29 29 H 1.09005 * 109.47065 * 333.29702 * 1 2 3 30 30 H 1.08998 * 109.47057 * 213.30213 * 1 2 3 31 31 H 1.08005 * 119.99964 * 0.02562 * 3 2 1 32 32 H 1.08006 * 119.99997 * 179.97438 * 4 3 2 33 33 H 1.08001 * 119.99685 * 179.97438 * 5 4 3 34 34 H 1.08004 * 120.00114 * 180.02562 * 6 5 4 35 35 H 1.09005 * 109.46897 * 35.61100 * 8 7 2 36 36 H 1.08995 * 109.47400 * 155.61351 * 8 7 2 37 37 H 1.09000 * 109.47300 * 174.99051 * 11 9 8 38 38 H 1.08992 * 109.47437 * 294.99958 * 11 9 8 39 39 H 0.96700 * 114.00372 * 179.97438 * 12 11 9 40 40 H 1.00905 * 111.00518 * 32.09581 * 13 9 8 41 41 H 1.08993 * 109.46763 * 35.00513 * 14 13 9 42 42 H 1.09001 * 109.47072 * 59.99629 * 15 14 13 43 43 H 1.08991 * 109.47187 * 179.97438 * 15 14 13 44 44 H 1.09003 * 109.46622 * 179.97438 * 16 15 14 45 45 H 1.08999 * 109.47607 * 60.00005 * 16 15 14 46 46 H 1.08999 * 109.47188 * 300.00678 * 17 16 15 47 47 H 0.96992 * 120.00495 * 180.02562 * 21 20 18 48 48 H 1.09000 * 109.47206 * 179.97438 * 26 17 16 49 49 H 1.09004 * 109.47022 * 60.00304 * 26 17 16 50 50 H 1.09002 * 109.47092 * 179.97438 * 27 14 13 51 51 H 1.09003 * 109.47627 * 300.00344 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5803 1.1975 0.0005 5 6 4.2717 0.0001 0.0005 6 6 3.5807 -1.1968 0.0009 7 6 2.1981 -1.1968 0.0056 8 6 1.4447 -2.5020 0.0124 9 6 1.0679 -2.8660 1.4499 10 1 0.5189 -2.0400 1.9018 11 6 0.1909 -4.1196 1.4454 12 8 0.8650 -5.1701 0.7496 13 7 2.2885 -3.1250 2.2252 14 6 2.0541 -2.9182 3.6607 15 6 2.2328 -1.4366 3.9983 16 6 3.6566 -1.0014 3.6461 17 6 4.6578 -1.8322 4.4512 18 6 6.0602 -1.4031 4.1047 19 1 6.7550 -2.1158 3.6854 20 6 6.4564 -0.1007 4.3232 21 7 5.6106 0.7671 4.8344 22 14 8.1950 0.4311 3.8944 23 1 8.4329 0.2223 2.4435 24 1 8.3678 1.8693 4.2219 25 1 9.1664 -0.3753 4.6763 26 6 4.4792 -3.3138 4.1136 27 6 3.0553 -3.7491 4.4657 28 1 -0.3634 -0.0592 -1.0260 29 1 -0.3633 0.9181 0.4618 30 1 -0.3633 -0.8589 0.5642 31 1 1.6582 2.1328 0.0004 32 1 4.1203 2.1328 0.0001 33 1 5.3517 0.0002 0.0005 34 1 4.1207 -2.1322 0.0013 35 1 0.5392 -2.4019 -0.5862 36 1 2.0734 -3.2867 -0.4083 37 1 -0.0039 -4.4304 2.4719 38 1 -0.7531 -3.9009 0.9466 39 1 0.3663 -5.9975 0.7078 40 1 3.0531 -2.5538 1.8977 41 1 1.0398 -3.2283 3.9115 42 1 1.5196 -0.8447 3.4247 43 1 2.0584 -1.2831 5.0632 44 1 3.7837 0.0542 3.8863 45 1 3.8306 -1.1548 2.5811 46 1 4.4839 -1.6788 5.5162 47 1 5.8892 1.6834 4.9877 48 1 5.1927 -3.9057 4.6868 49 1 4.6531 -3.4673 3.0485 50 1 2.8817 -3.5953 5.5308 51 1 2.9281 -4.8046 4.2252 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173333664.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:32 Heat of formation + Delta-G solvation = -68.275789 kcal Electronic energy + Delta-G solvation = -29055.442970 eV Core-core repulsion = 25531.395684 eV Total energy + Delta-G solvation = -3524.047286 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.02158 -39.72763 -37.98399 -35.93464 -34.76207 -33.61811 -32.66275 -31.29147 -30.88632 -28.82689 -27.98859 -26.65256 -26.37538 -23.18954 -23.05420 -22.37698 -22.04023 -21.01935 -19.54836 -18.35825 -18.16233 -17.38429 -17.06997 -16.62894 -16.41621 -15.97124 -15.61753 -15.45450 -15.03730 -14.78134 -14.66644 -14.30590 -14.11993 -14.00889 -13.86268 -13.71190 -13.55106 -13.44991 -13.02756 -12.95215 -12.80077 -12.78557 -12.56931 -12.52413 -12.20359 -12.04865 -11.88473 -11.74583 -11.72750 -11.65863 -11.37050 -11.09229 -10.70590 -10.61801 -10.47980 -10.28682 -9.62305 -9.38291 -9.07365 -8.03664 -6.16496 0.49233 0.53257 1.38475 1.38815 1.46262 2.43628 2.87708 3.22273 3.34789 3.63340 3.83720 3.96928 4.08735 4.10013 4.13973 4.19970 4.21037 4.34573 4.43941 4.47055 4.56102 4.63482 4.64410 4.68247 4.76431 4.78785 4.85704 4.88106 4.90421 4.95585 4.97509 5.01747 5.05296 5.12339 5.19837 5.25984 5.26587 5.32908 5.40798 5.47941 5.54947 5.63908 5.66615 5.69654 5.76928 5.78874 6.10304 6.19288 6.25941 6.39999 6.48490 6.62926 6.95089 7.16212 7.50472 8.99275 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.011522 B = 0.005879 C = 0.004486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2429.462652 B = 4761.755230 C = 6239.471823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.091 4.091 3 C -0.127 4.127 4 C -0.131 4.131 5 C -0.132 4.132 6 C -0.120 4.120 7 C -0.092 4.092 8 C -0.066 4.066 9 C 0.086 3.914 10 H 0.055 0.945 11 C 0.093 3.907 12 O -0.575 6.575 13 N -0.677 5.677 14 C 0.099 3.901 15 C -0.139 4.139 16 C -0.090 4.090 17 C 0.049 3.951 18 C -0.529 4.529 19 H 0.045 0.955 20 C 0.020 3.980 21 N -0.912 5.912 22 Si 0.940 3.060 23 H -0.272 1.272 24 H -0.285 1.285 25 H -0.274 1.274 26 C -0.097 4.097 27 C -0.097 4.097 28 H 0.086 0.914 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.137 0.863 32 H 0.124 0.876 33 H 0.110 0.890 34 H 0.113 0.887 35 H 0.097 0.903 36 H 0.073 0.927 37 H 0.044 0.956 38 H 0.067 0.933 39 H 0.387 0.613 40 H 0.344 0.656 41 H 0.083 0.917 42 H 0.046 0.954 43 H 0.046 0.954 44 H 0.048 0.952 45 H 0.037 0.963 46 H -0.015 1.015 47 H 0.257 0.743 48 H 0.035 0.965 49 H 0.045 0.955 50 H 0.053 0.947 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.308 -5.263 -10.483 19.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.091 4.091 3 C -0.145 4.145 4 C -0.149 4.149 5 C -0.150 4.150 6 C -0.138 4.138 7 C -0.092 4.092 8 C -0.103 4.103 9 C -0.023 4.023 10 H 0.073 0.927 11 C 0.015 3.985 12 O -0.382 6.382 13 N -0.312 5.312 14 C -0.011 4.011 15 C -0.179 4.179 16 C -0.128 4.128 17 C 0.030 3.970 18 C -0.567 4.567 19 H 0.063 0.937 20 C -0.179 4.179 21 N -0.552 5.552 22 Si 0.766 3.234 23 H -0.197 1.197 24 H -0.210 1.210 25 H -0.199 1.199 26 C -0.135 4.135 27 C -0.135 4.135 28 H 0.105 0.895 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.155 0.845 32 H 0.142 0.858 33 H 0.128 0.872 34 H 0.131 0.869 35 H 0.115 0.885 36 H 0.091 0.909 37 H 0.063 0.937 38 H 0.085 0.915 39 H 0.235 0.765 40 H 0.167 0.833 41 H 0.101 0.899 42 H 0.064 0.936 43 H 0.065 0.935 44 H 0.067 0.933 45 H 0.056 0.944 46 H 0.003 0.997 47 H 0.066 0.934 48 H 0.053 0.947 49 H 0.064 0.936 50 H 0.072 0.928 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -14.962 -5.299 -10.471 19.015 hybrid contribution 1.297 1.373 0.384 1.927 sum -13.664 -3.926 -10.087 17.432 Atomic orbital electron populations 1.20888 0.89223 1.03445 1.03343 1.20060 0.97462 0.92097 0.99488 1.21251 0.93874 0.98484 1.00898 1.21280 0.95240 0.97990 1.00427 1.21206 0.99925 0.93427 1.00440 1.21093 0.94543 0.97723 1.00469 1.19929 0.93157 0.95660 1.00491 1.20588 1.00622 0.92631 0.96491 1.21688 0.91969 0.95512 0.93174 0.92680 1.22185 0.93426 0.87210 0.95692 1.86562 1.48979 1.24380 1.78271 1.60833 1.07177 1.61155 1.01994 1.21459 0.98533 0.92469 0.88611 1.22155 0.97693 0.97825 1.00183 1.21274 0.92542 1.01002 0.98003 1.18595 0.93444 0.91436 0.93477 1.21526 0.98377 0.95265 1.41505 0.93699 1.25592 1.00178 0.96889 0.95201 1.70016 1.35818 1.03970 1.45412 0.85897 0.81562 0.77080 0.78864 1.19727 1.21023 1.19945 1.21409 0.95747 0.96741 0.99600 1.21455 0.94538 0.99241 0.98224 0.89546 0.90955 0.90751 0.84469 0.85837 0.87198 0.86854 0.88510 0.90870 0.93737 0.91456 0.76472 0.83321 0.89889 0.93578 0.93520 0.93324 0.94404 0.99661 0.93396 0.94660 0.93590 0.92787 0.91284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.12 9.14 71.24 0.65 -1.46 16 2 C -0.09 -2.43 5.88 -19.87 -0.12 -2.55 16 3 C -0.13 -3.62 9.69 22.27 0.22 -3.40 16 4 C -0.13 -4.26 10.05 22.27 0.22 -4.03 16 5 C -0.13 -4.67 9.98 22.27 0.22 -4.44 16 6 C -0.12 -4.06 7.01 22.27 0.16 -3.90 16 7 C -0.09 -2.68 4.69 -19.87 -0.09 -2.77 16 8 C -0.07 -1.63 3.99 29.85 0.12 -1.51 16 9 C 0.09 2.18 2.00 44.91 0.09 2.26 16 10 H 0.06 1.39 5.88 -2.39 -0.01 1.38 16 11 C 0.09 1.83 6.77 71.98 0.49 2.32 16 12 O -0.58 -12.22 12.83 -148.98 -1.91 -14.13 16 13 N -0.68 -21.66 5.52 -469.48 -2.59 -24.25 16 14 C 0.10 3.29 2.65 44.91 0.12 3.41 16 15 C -0.14 -5.43 5.50 30.59 0.17 -5.27 16 16 C -0.09 -4.32 4.73 30.59 0.14 -4.17 16 17 C 0.05 2.52 2.10 -11.54 -0.02 2.50 16 18 C -0.53 -30.07 8.56 25.60 0.22 -29.86 16 19 H 0.04 2.55 7.74 -2.91 -0.02 2.52 16 20 C 0.02 1.13 5.30 84.65 0.45 1.58 16 21 N -0.91 -53.86 11.32 21.45 0.24 -53.61 16 22 Si 0.94 44.91 29.54 68.60 2.03 46.93 16 23 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 24 H -0.28 -13.33 7.11 99.48 0.71 -12.63 16 25 H -0.27 -12.83 7.11 99.48 0.71 -12.13 16 26 C -0.10 -4.25 4.90 30.60 0.15 -4.10 16 27 C -0.10 -3.45 5.64 30.59 0.17 -3.28 16 28 H 0.09 1.30 8.14 -2.39 -0.02 1.29 16 29 H 0.07 1.24 8.06 -2.38 -0.02 1.22 16 30 H 0.07 1.29 5.55 -2.39 -0.01 1.28 16 31 H 0.14 3.18 8.06 -2.91 -0.02 3.16 16 32 H 0.12 3.66 8.06 -2.91 -0.02 3.63 16 33 H 0.11 3.95 8.06 -2.91 -0.02 3.93 16 34 H 0.11 3.88 7.91 -2.91 -0.02 3.86 16 35 H 0.10 1.89 7.08 -2.38 -0.02 1.87 16 36 H 0.07 2.02 7.64 -2.39 -0.02 2.01 16 37 H 0.04 0.87 7.29 -2.39 -0.02 0.85 16 38 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.39 4.57 9.12 -74.06 -0.68 3.89 16 40 H 0.34 12.64 3.00 -89.69 -0.27 12.37 16 41 H 0.08 2.35 7.02 -2.39 -0.02 2.33 16 42 H 0.05 1.69 7.41 -2.39 -0.02 1.67 16 43 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 44 H 0.05 2.72 6.07 -2.39 -0.01 2.70 16 45 H 0.04 1.80 4.97 -2.39 -0.01 1.79 16 46 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 47 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 48 H 0.03 1.54 8.14 -2.39 -0.02 1.52 16 49 H 0.05 2.05 7.21 -2.38 -0.02 2.03 16 50 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 51 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 Total: -1.00 -66.42 380.55 1.10 -65.32 By element: Atomic # 1 Polarization: 38.42 SS G_CDS: -0.02 Total: 38.40 kcal Atomic # 6 Polarization: -62.02 SS G_CDS: 3.35 Total: -58.66 kcal Atomic # 7 Polarization: -75.51 SS G_CDS: -2.35 Total: -77.86 kcal Atomic # 8 Polarization: -12.22 SS G_CDS: -1.91 Total: -14.13 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.93 kcal Total: -66.42 1.10 -65.32 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173333664.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.953 kcal (2) G-P(sol) polarization free energy of solvation -66.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds