Wall clock time and date at job start Tue Mar 31 2020 11:40:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35895 * 117.00128 * 2 1 4 4 C 1.38759 * 120.05370 * 359.97438 * 3 2 1 5 5 C 1.38126 * 119.94113 * 180.02562 * 4 3 2 6 6 C 1.50702 * 119.96965 * 179.97438 * 5 4 3 7 7 C 1.38290 * 120.05768 * 359.97438 * 5 4 3 8 8 C 1.50700 * 119.94343 * 180.28012 * 7 5 4 9 9 N 1.46898 * 109.47056 * 79.72617 * 8 7 5 10 10 C 1.46898 * 110.99807 * 180.02562 * 9 8 7 11 11 C 1.53005 * 109.47142 * 275.00144 * 10 9 8 12 12 C 1.53001 * 109.46630 * 299.99810 * 11 10 9 13 13 C 1.53000 * 109.47361 * 300.00170 * 12 11 10 14 14 C 1.50694 * 109.47241 * 180.02562 * 13 12 11 15 15 H 1.08001 * 120.00054 * 240.00157 * 14 13 12 16 16 C 1.37882 * 120.00488 * 59.99593 * 14 13 12 17 17 N 1.31518 * 119.99355 * 0.02562 * 16 14 13 18 18 Si 1.86794 * 120.00250 * 180.02562 * 16 14 13 19 19 H 1.48492 * 109.47344 * 60.00040 * 18 16 14 20 20 H 1.48501 * 109.46980 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47062 * 299.99883 * 18 16 14 22 22 C 1.52998 * 109.47170 * 59.99853 * 13 12 11 23 23 C 1.52993 * 109.47175 * 300.00114 * 22 13 12 24 24 C 1.38245 * 120.10982 * 0.02562 * 7 5 4 25 25 C 1.38164 * 120.05645 * 359.97438 * 24 7 5 26 26 C 1.50705 * 120.02639 * 180.02562 * 25 24 7 27 27 H 1.09002 * 109.46782 * 59.99820 * 1 2 3 28 28 H 1.08997 * 109.46965 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46735 * 300.00020 * 1 2 3 30 30 H 1.07998 * 120.02758 * 0.02562 * 4 3 2 31 31 H 1.08997 * 109.47118 * 269.99825 * 6 5 4 32 32 H 1.08998 * 109.46906 * 29.99894 * 6 5 4 33 33 H 1.09007 * 109.47060 * 149.99774 * 6 5 4 34 34 H 1.09000 * 109.46952 * 199.72634 * 8 7 5 35 35 H 1.09005 * 109.47147 * 319.72201 * 8 7 5 36 36 H 1.00901 * 111.00084 * 303.94930 * 9 8 7 37 37 H 1.09001 * 109.47294 * 34.99797 * 10 9 8 38 38 H 1.08992 * 109.47038 * 59.99509 * 11 10 9 39 39 H 1.09000 * 109.47088 * 180.02562 * 11 10 9 40 40 H 1.09002 * 109.47258 * 180.02562 * 12 11 10 41 41 H 1.09000 * 109.47344 * 60.00265 * 12 11 10 42 42 H 1.09009 * 109.46813 * 300.00105 * 13 12 11 43 43 H 0.96999 * 119.99747 * 180.02562 * 17 16 14 44 44 H 1.09000 * 109.47046 * 179.97438 * 22 13 12 45 45 H 1.09000 * 109.46790 * 60.00362 * 22 13 12 46 46 H 1.09000 * 109.47464 * 299.99835 * 23 22 13 47 47 H 1.09002 * 109.47335 * 179.97438 * 23 22 13 48 48 H 1.07997 * 119.96937 * 179.97438 * 24 7 5 49 49 H 1.09007 * 109.46501 * 90.00329 * 26 25 24 50 50 H 1.08991 * 109.47190 * 209.99880 * 26 25 24 51 51 H 1.08997 * 109.47289 * 330.00785 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3753 -0.0005 5 6 1.9209 3.6047 -0.0011 6 6 1.1020 4.8698 -0.0022 7 6 3.3020 3.6758 -0.0005 8 6 3.9862 5.0185 0.0053 9 7 3.9881 5.5611 1.3703 10 6 4.6480 6.8728 1.4144 11 6 6.1588 6.6791 1.5596 12 6 6.4531 5.9164 2.8529 13 6 5.9240 6.7135 4.0468 14 6 6.2145 5.9626 5.3206 15 1 5.4027 5.6540 5.9626 16 6 7.5166 5.6694 5.6666 17 7 8.5051 6.0455 4.8850 18 14 7.8765 4.7379 7.2452 19 1 7.2099 3.4117 7.2004 20 1 9.3429 4.5509 7.3862 21 1 7.3628 5.5112 8.4043 22 6 4.4133 6.9073 3.9016 23 6 4.1190 7.6700 2.6084 24 6 4.0560 2.5170 0.0000 25 6 3.4311 1.2848 0.0005 26 6 4.2538 0.0221 0.0017 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 0.2128 2.3203 -0.0005 31 1 0.9050 5.1742 -1.0302 32 1 0.1572 4.6915 0.5113 33 1 1.6515 5.6588 0.5114 34 1 5.0131 4.9045 -0.3419 35 1 3.4526 5.7010 -0.6564 36 1 3.0505 5.6159 1.7391 37 1 4.4383 7.4162 0.4931 38 1 6.5356 6.1111 0.7091 39 1 6.6484 7.6524 1.5928 40 1 7.5294 5.7787 2.9566 41 1 5.9635 4.9431 2.8202 42 1 6.4137 7.6869 4.0795 43 1 9.4212 5.8389 5.1281 44 1 4.0364 7.4749 4.7524 45 1 3.9237 5.9340 3.8689 46 1 4.6087 8.6433 2.6411 47 1 3.0427 7.8077 2.5046 48 1 5.1344 2.5752 0.0000 49 1 4.4516 -0.2816 1.0298 50 1 3.7067 -0.7684 -0.5118 51 1 5.1981 0.2031 -0.5117 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173334163.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:41 Heat of formation + Delta-G solvation = -38.431791 kcal Electronic energy + Delta-G solvation = -27362.474876 eV Core-core repulsion = 23839.721723 eV Total energy + Delta-G solvation = -3522.753153 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.43266 -38.59115 -37.62700 -34.68434 -33.57999 -32.26364 -30.44047 -29.63793 -29.26650 -28.42669 -27.62079 -25.30274 -24.41982 -23.78858 -21.97784 -21.41210 -20.44651 -20.15784 -18.07490 -17.55034 -16.64385 -16.18345 -15.90733 -15.60911 -14.93137 -14.59109 -14.51121 -14.25076 -14.00096 -13.73657 -13.57166 -13.25567 -13.04618 -12.85155 -12.66923 -12.52495 -12.14582 -12.00443 -11.98934 -11.88998 -11.76222 -11.42894 -11.36622 -11.17728 -10.86669 -10.80157 -10.76253 -10.58730 -10.50511 -10.13291 -9.96998 -9.63941 -9.16523 -8.77023 -8.65343 -8.44384 -8.11250 -8.01563 -7.78984 -5.82749 -3.87560 1.33848 1.44216 3.18229 3.40776 3.44741 3.48139 3.66790 4.55804 4.63303 4.66335 4.76955 4.89586 4.94717 4.96565 5.08117 5.18601 5.26148 5.42679 5.45536 5.46758 5.48362 5.56570 5.61049 5.61882 5.71336 5.73720 5.76382 5.78817 5.86070 6.00254 6.23414 6.27188 6.35412 6.39147 6.43740 6.50382 6.56803 6.63665 6.73909 6.83498 6.86014 6.95447 7.11986 7.33958 7.36897 7.51137 7.63340 7.76375 7.83149 7.94148 8.28306 8.38092 8.67406 9.16275 9.75565 11.22469 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.012623 B = 0.003526 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2217.625008 B = 7939.154510 C = 9067.800432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.316 6.316 3 C 0.122 3.878 4 C -0.205 4.205 5 C -0.049 4.049 6 C -0.116 4.116 7 C -0.103 4.103 8 C 0.103 3.897 9 N -0.664 5.664 10 C 0.093 3.907 11 C -0.105 4.105 12 C -0.097 4.097 13 C 0.053 3.947 14 C -0.506 4.506 15 H 0.050 0.950 16 C 0.061 3.939 17 N -0.892 5.892 18 Si 0.886 3.114 19 H -0.278 1.278 20 H -0.289 1.289 21 H -0.279 1.279 22 C -0.102 4.102 23 C -0.118 4.118 24 C -0.058 4.058 25 C -0.121 4.121 26 C -0.103 4.103 27 H 0.052 0.948 28 H 0.097 0.903 29 H 0.054 0.946 30 H 0.124 0.876 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.078 0.922 35 H 0.030 0.970 36 H 0.334 0.666 37 H 0.024 0.976 38 H 0.038 0.962 39 H 0.048 0.952 40 H 0.081 0.919 41 H 0.048 0.952 42 H 0.016 0.984 43 H 0.257 0.743 44 H 0.038 0.962 45 H 0.056 0.944 46 H 0.060 0.940 47 H 0.040 0.960 48 H 0.131 0.869 49 H 0.068 0.932 50 H 0.065 0.935 51 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.101 -6.727 -14.284 21.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.230 6.230 3 C 0.077 3.923 4 C -0.224 4.224 5 C -0.050 4.050 6 C -0.173 4.173 7 C -0.104 4.104 8 C -0.026 4.026 9 N -0.297 5.297 10 C -0.016 4.016 11 C -0.143 4.143 12 C -0.135 4.135 13 C 0.035 3.965 14 C -0.545 4.545 15 H 0.068 0.932 16 C -0.140 4.140 17 N -0.531 5.531 18 Si 0.714 3.286 19 H -0.204 1.204 20 H -0.215 1.215 21 H -0.205 1.205 22 C -0.140 4.140 23 C -0.156 4.156 24 C -0.076 4.076 25 C -0.121 4.121 26 C -0.160 4.160 27 H 0.071 0.929 28 H 0.115 0.885 29 H 0.073 0.927 30 H 0.142 0.858 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.097 0.903 35 H 0.048 0.952 36 H 0.154 0.846 37 H 0.042 0.958 38 H 0.056 0.944 39 H 0.067 0.933 40 H 0.099 0.901 41 H 0.067 0.933 42 H 0.034 0.966 43 H 0.067 0.933 44 H 0.056 0.944 45 H 0.075 0.925 46 H 0.079 0.921 47 H 0.059 0.941 48 H 0.149 0.851 49 H 0.087 0.913 50 H 0.084 0.916 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -14.250 -7.251 -14.097 21.316 hybrid contribution -0.742 0.188 0.486 0.907 sum -14.993 -7.063 -13.611 21.446 Atomic orbital electron populations 1.23007 0.78853 1.03594 1.01218 1.86045 1.20932 1.27062 1.88947 1.18763 0.91768 0.83928 0.97824 1.20956 0.99454 0.91754 1.10247 1.19484 0.93334 0.94346 0.97810 1.20849 0.99314 0.94994 1.02154 1.19588 0.92425 0.95333 1.03057 1.20827 0.99817 0.91351 0.90602 1.60544 1.23424 1.26388 1.19298 1.21541 0.96549 0.87617 0.95850 1.21607 0.92570 0.99990 1.00138 1.21426 1.03041 0.97951 0.91097 1.18585 0.88801 0.95535 0.93609 1.21207 0.91807 1.35592 1.05870 0.93151 1.24937 0.96498 0.95989 0.96547 1.69887 0.98963 1.47268 1.36997 0.86767 0.76909 0.80586 0.84341 1.20402 1.21470 1.20528 1.21533 1.00734 0.98473 0.93219 1.21743 0.98145 0.98972 0.96712 1.20806 0.99991 0.90241 0.96590 1.19226 0.90481 0.96193 1.06242 1.20584 0.98630 0.94375 1.02385 0.92933 0.88506 0.92732 0.85840 0.91233 0.91557 0.91362 0.90343 0.95157 0.84589 0.95761 0.94357 0.93296 0.90112 0.93280 0.96559 0.93288 0.94358 0.92544 0.92146 0.94132 0.85088 0.91347 0.91579 0.91707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.32 -3.72 9.54 -19.41 -0.19 -3.90 16 3 C 0.12 1.58 6.66 -39.21 -0.26 1.32 16 4 C -0.21 -2.45 8.69 -39.43 -0.34 -2.79 16 5 C -0.05 -0.61 5.86 -104.64 -0.61 -1.22 16 6 C -0.12 -1.16 9.23 36.01 0.33 -0.83 16 7 C -0.10 -1.41 5.40 -104.60 -0.56 -1.97 16 8 C 0.10 1.41 4.84 -4.98 -0.02 1.38 16 9 N -0.66 -10.48 4.79 -107.99 -0.52 -11.00 16 10 C 0.09 1.56 2.82 -67.71 -0.19 1.36 16 11 C -0.10 -2.05 5.53 -26.73 -0.15 -2.19 16 12 C -0.10 -2.33 4.82 -26.73 -0.13 -2.45 16 13 C 0.05 1.34 2.10 -91.78 -0.19 1.15 16 14 C -0.51 -14.29 8.56 -34.44 -0.29 -14.59 16 15 H 0.05 1.42 7.74 -52.49 -0.41 1.01 16 16 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 17 N -0.89 -26.05 11.32 55.43 0.63 -25.42 16 18 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 19 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 20 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 21 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 22 C -0.10 -2.15 4.98 -26.74 -0.13 -2.28 16 23 C -0.12 -2.03 5.30 -26.73 -0.14 -2.17 16 24 C -0.06 -0.80 9.32 -39.61 -0.37 -1.17 16 25 C -0.12 -1.62 5.89 -104.47 -0.62 -2.24 16 26 C -0.10 -1.19 9.79 36.01 0.35 -0.83 16 27 H 0.05 0.35 7.66 -51.93 -0.40 -0.05 16 28 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.05 0.39 7.66 -51.93 -0.40 0.00 16 30 H 0.12 1.19 6.30 -52.49 -0.33 0.85 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.58 8.08 -51.93 -0.42 0.16 16 33 H 0.07 0.71 5.25 -51.92 -0.27 0.44 16 34 H 0.08 1.11 7.29 -51.93 -0.38 0.73 16 35 H 0.03 0.38 7.19 -51.93 -0.37 0.00 16 36 H 0.33 5.04 6.41 -39.29 -0.25 4.79 16 37 H 0.02 0.37 7.80 -51.93 -0.40 -0.03 16 38 H 0.04 0.70 7.45 -51.93 -0.39 0.31 16 39 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 40 H 0.08 2.20 6.07 -51.93 -0.32 1.88 16 41 H 0.05 1.22 7.60 -51.93 -0.39 0.83 16 42 H 0.02 0.45 8.14 -51.92 -0.42 0.03 16 43 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 44 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.06 1.21 7.48 -51.93 -0.39 0.82 16 46 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 47 H 0.04 0.60 8.12 -51.93 -0.42 0.18 16 48 H 0.13 1.74 8.03 -52.49 -0.42 1.32 16 49 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 50 H 0.07 0.72 7.53 -51.93 -0.39 0.33 16 51 H 0.06 0.66 8.09 -51.93 -0.42 0.24 16 LS Contribution 388.50 15.07 5.85 5.85 Total: -1.00 -30.34 388.50 -10.55 -40.89 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -8.87 Total: 3.36 kcal Atomic # 6 Polarization: -24.24 SS G_CDS: -2.44 Total: -26.68 kcal Atomic # 7 Polarization: -36.53 SS G_CDS: 0.11 Total: -36.42 kcal Atomic # 8 Polarization: -3.72 SS G_CDS: -0.19 Total: -3.90 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -30.34 -10.55 -40.89 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173334163.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.454 kcal (2) G-P(sol) polarization free energy of solvation -30.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds