Wall clock time and date at job start Tue Mar 31 2020 11:40:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35895 * 117.00128 * 2 1 4 4 C 1.38759 * 120.05370 * 359.97438 * 3 2 1 5 5 C 1.38126 * 119.94113 * 180.02562 * 4 3 2 6 6 C 1.50702 * 119.96965 * 179.97438 * 5 4 3 7 7 C 1.38290 * 120.05768 * 359.97438 * 5 4 3 8 8 C 1.50700 * 119.94343 * 180.28012 * 7 5 4 9 9 N 1.46898 * 109.47056 * 79.72617 * 8 7 5 10 10 C 1.46898 * 110.99807 * 180.02562 * 9 8 7 11 11 C 1.53005 * 109.47142 * 275.00144 * 10 9 8 12 12 C 1.53001 * 109.46630 * 299.99810 * 11 10 9 13 13 C 1.53000 * 109.47361 * 300.00170 * 12 11 10 14 14 C 1.50694 * 109.47241 * 180.02562 * 13 12 11 15 15 H 1.08001 * 120.00054 * 240.00157 * 14 13 12 16 16 C 1.37882 * 120.00488 * 59.99593 * 14 13 12 17 17 N 1.31518 * 119.99355 * 0.02562 * 16 14 13 18 18 Si 1.86794 * 120.00250 * 180.02562 * 16 14 13 19 19 H 1.48492 * 109.47344 * 60.00040 * 18 16 14 20 20 H 1.48501 * 109.46980 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47062 * 299.99883 * 18 16 14 22 22 C 1.52998 * 109.47170 * 59.99853 * 13 12 11 23 23 C 1.52993 * 109.47175 * 300.00114 * 22 13 12 24 24 C 1.38245 * 120.10982 * 0.02562 * 7 5 4 25 25 C 1.38164 * 120.05645 * 359.97438 * 24 7 5 26 26 C 1.50705 * 120.02639 * 180.02562 * 25 24 7 27 27 H 1.09002 * 109.46782 * 59.99820 * 1 2 3 28 28 H 1.08997 * 109.46965 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46735 * 300.00020 * 1 2 3 30 30 H 1.07998 * 120.02758 * 0.02562 * 4 3 2 31 31 H 1.08997 * 109.47118 * 269.99825 * 6 5 4 32 32 H 1.08998 * 109.46906 * 29.99894 * 6 5 4 33 33 H 1.09007 * 109.47060 * 149.99774 * 6 5 4 34 34 H 1.09000 * 109.46952 * 199.72634 * 8 7 5 35 35 H 1.09005 * 109.47147 * 319.72201 * 8 7 5 36 36 H 1.00901 * 111.00084 * 303.94930 * 9 8 7 37 37 H 1.09001 * 109.47294 * 34.99797 * 10 9 8 38 38 H 1.08992 * 109.47038 * 59.99509 * 11 10 9 39 39 H 1.09000 * 109.47088 * 180.02562 * 11 10 9 40 40 H 1.09002 * 109.47258 * 180.02562 * 12 11 10 41 41 H 1.09000 * 109.47344 * 60.00265 * 12 11 10 42 42 H 1.09009 * 109.46813 * 300.00105 * 13 12 11 43 43 H 0.96999 * 119.99747 * 180.02562 * 17 16 14 44 44 H 1.09000 * 109.47046 * 179.97438 * 22 13 12 45 45 H 1.09000 * 109.46790 * 60.00362 * 22 13 12 46 46 H 1.09000 * 109.47464 * 299.99835 * 23 22 13 47 47 H 1.09002 * 109.47335 * 179.97438 * 23 22 13 48 48 H 1.07997 * 119.96937 * 179.97438 * 24 7 5 49 49 H 1.09007 * 109.46501 * 90.00329 * 26 25 24 50 50 H 1.08991 * 109.47190 * 209.99880 * 26 25 24 51 51 H 1.08997 * 109.47289 * 330.00785 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3753 -0.0005 5 6 1.9209 3.6047 -0.0011 6 6 1.1020 4.8698 -0.0022 7 6 3.3020 3.6758 -0.0005 8 6 3.9862 5.0185 0.0053 9 7 3.9881 5.5611 1.3703 10 6 4.6480 6.8728 1.4144 11 6 6.1588 6.6791 1.5596 12 6 6.4531 5.9164 2.8529 13 6 5.9240 6.7135 4.0468 14 6 6.2145 5.9626 5.3206 15 1 5.4027 5.6540 5.9626 16 6 7.5166 5.6694 5.6666 17 7 8.5051 6.0455 4.8850 18 14 7.8765 4.7379 7.2452 19 1 7.2099 3.4117 7.2004 20 1 9.3429 4.5509 7.3862 21 1 7.3628 5.5112 8.4043 22 6 4.4133 6.9073 3.9016 23 6 4.1190 7.6700 2.6084 24 6 4.0560 2.5170 0.0000 25 6 3.4311 1.2848 0.0005 26 6 4.2538 0.0221 0.0017 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 0.2128 2.3203 -0.0005 31 1 0.9050 5.1742 -1.0302 32 1 0.1572 4.6915 0.5113 33 1 1.6515 5.6588 0.5114 34 1 5.0131 4.9045 -0.3419 35 1 3.4526 5.7010 -0.6564 36 1 3.0505 5.6159 1.7391 37 1 4.4383 7.4162 0.4931 38 1 6.5356 6.1111 0.7091 39 1 6.6484 7.6524 1.5928 40 1 7.5294 5.7787 2.9566 41 1 5.9635 4.9431 2.8202 42 1 6.4137 7.6869 4.0795 43 1 9.4212 5.8389 5.1281 44 1 4.0364 7.4749 4.7524 45 1 3.9237 5.9340 3.8689 46 1 4.6087 8.6433 2.6411 47 1 3.0427 7.8077 2.5046 48 1 5.1344 2.5752 0.0000 49 1 4.4516 -0.2816 1.0298 50 1 3.7067 -0.7684 -0.5118 51 1 5.1981 0.2031 -0.5117 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173334163.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:40 Heat of formation + Delta-G solvation = -53.842367 kcal Electronic energy + Delta-G solvation = -27363.143129 eV Core-core repulsion = 23839.721723 eV Total energy + Delta-G solvation = -3523.421406 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.33893 -39.90123 -38.73503 -36.08324 -34.80261 -33.89043 -31.77371 -31.29287 -30.18126 -29.79398 -28.38951 -26.67522 -25.93768 -24.87197 -23.19061 -22.77944 -22.19697 -21.12160 -19.69596 -18.39570 -18.32654 -17.56319 -16.82358 -16.68328 -16.54228 -16.09279 -15.70025 -15.43107 -15.10854 -14.73669 -14.66752 -14.51870 -14.18577 -14.07858 -13.85948 -13.82169 -13.64293 -13.20305 -13.03890 -12.99355 -12.79351 -12.75590 -12.69823 -12.63341 -12.53969 -12.46014 -11.91714 -11.86456 -11.72149 -11.65306 -11.59035 -11.53032 -11.08558 -10.64440 -10.35330 -10.22662 -9.60044 -9.11872 -8.84172 -8.00533 -6.13548 0.39335 0.46979 1.40740 1.42567 1.49661 2.41580 2.46800 2.69644 3.24763 3.50753 3.79633 3.85634 3.96039 4.08832 4.17798 4.22113 4.28437 4.35423 4.38725 4.40502 4.50058 4.62571 4.67883 4.73371 4.73901 4.79290 4.80143 4.83101 4.84406 4.87032 4.92215 4.97492 4.97933 5.06354 5.12220 5.19881 5.23635 5.36685 5.39101 5.43725 5.49718 5.55718 5.66899 5.73689 5.77101 5.88755 5.91561 6.21634 6.29528 6.36205 6.49700 6.54619 6.67627 7.00400 7.53003 9.02351 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.012623 B = 0.003526 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2217.625008 B = 7939.154510 C = 9067.800432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.332 6.332 3 C 0.114 3.886 4 C -0.208 4.208 5 C -0.051 4.051 6 C -0.114 4.114 7 C -0.119 4.119 8 C 0.110 3.890 9 N -0.679 5.679 10 C 0.103 3.897 11 C -0.100 4.100 12 C -0.082 4.082 13 C 0.050 3.950 14 C -0.531 4.531 15 H 0.045 0.955 16 C 0.012 3.988 17 N -0.916 5.916 18 Si 0.946 3.054 19 H -0.275 1.275 20 H -0.284 1.284 21 H -0.272 1.272 22 C -0.093 4.093 23 C -0.111 4.111 24 C -0.075 4.075 25 C -0.142 4.142 26 C -0.100 4.100 27 H 0.065 0.935 28 H 0.118 0.882 29 H 0.059 0.941 30 H 0.148 0.852 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.051 0.949 36 H 0.341 0.659 37 H 0.055 0.945 38 H 0.047 0.953 39 H 0.043 0.957 40 H 0.040 0.960 41 H 0.033 0.967 42 H -0.016 1.016 43 H 0.257 0.743 44 H 0.034 0.966 45 H 0.051 0.949 46 H 0.060 0.940 47 H 0.076 0.924 48 H 0.124 0.876 49 H 0.062 0.938 50 H 0.070 0.930 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.636 -6.675 -15.097 24.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.246 6.246 3 C 0.069 3.931 4 C -0.226 4.226 5 C -0.052 4.052 6 C -0.171 4.171 7 C -0.120 4.120 8 C -0.019 4.019 9 N -0.313 5.313 10 C -0.007 4.007 11 C -0.138 4.138 12 C -0.121 4.121 13 C 0.032 3.968 14 C -0.569 4.569 15 H 0.063 0.937 16 C -0.186 4.186 17 N -0.556 5.556 18 Si 0.772 3.228 19 H -0.200 1.200 20 H -0.209 1.209 21 H -0.197 1.197 22 C -0.131 4.131 23 C -0.149 4.149 24 C -0.094 4.094 25 C -0.143 4.143 26 C -0.156 4.156 27 H 0.083 0.917 28 H 0.136 0.864 29 H 0.078 0.922 30 H 0.166 0.834 31 H 0.103 0.897 32 H 0.099 0.901 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.069 0.931 36 H 0.162 0.838 37 H 0.073 0.927 38 H 0.066 0.934 39 H 0.062 0.938 40 H 0.059 0.941 41 H 0.051 0.949 42 H 0.002 0.998 43 H 0.066 0.934 44 H 0.053 0.947 45 H 0.070 0.930 46 H 0.079 0.921 47 H 0.094 0.906 48 H 0.142 0.858 49 H 0.081 0.919 50 H 0.089 0.911 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -16.806 -7.200 -14.912 23.594 hybrid contribution 0.016 0.109 0.747 0.755 sum -16.790 -7.091 -14.165 23.083 Atomic orbital electron populations 1.23308 0.76756 1.05389 1.02057 1.86026 1.23142 1.26641 1.88755 1.18945 0.91846 0.84838 0.97503 1.21250 1.00698 0.91236 1.09451 1.19791 0.93038 0.95637 0.96740 1.20889 0.99401 0.93488 1.03296 1.19666 0.93229 0.94979 1.04081 1.20765 0.99573 0.91777 0.89753 1.60416 1.23976 1.25969 1.20982 1.21376 0.94020 0.88406 0.96855 1.21506 0.95511 0.98980 0.97799 1.21124 1.00043 0.97658 0.93237 1.18568 0.91714 0.93453 0.93112 1.21628 0.91955 1.36078 1.07228 0.93697 1.25694 0.96429 0.96890 0.99629 1.70038 0.99124 1.48071 1.38414 0.85797 0.76862 0.79337 0.80761 1.20037 1.20940 1.19695 1.21353 0.97227 0.98880 0.95592 1.21683 1.00467 0.98238 0.94501 1.20896 0.99936 0.90996 0.97552 1.19455 0.91378 0.96509 1.06911 1.20567 0.98922 0.94003 1.02150 0.91661 0.86407 0.92197 0.83431 0.89694 0.90107 0.91668 0.91423 0.93093 0.83805 0.92742 0.93403 0.93800 0.94091 0.94856 0.99835 0.93380 0.94722 0.93032 0.92135 0.90575 0.85768 0.91937 0.91100 0.90971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.81 113.37 1.11 1.36 16 2 O -0.33 -7.37 9.54 -92.37 -0.88 -8.25 16 3 C 0.11 2.84 6.66 22.51 0.15 2.99 16 4 C -0.21 -4.53 8.69 22.37 0.19 -4.33 16 5 C -0.05 -1.16 5.86 -19.88 -0.12 -1.27 16 6 C -0.11 -1.88 9.23 71.24 0.66 -1.22 16 7 C -0.12 -3.11 5.40 -19.85 -0.11 -3.22 16 8 C 0.11 2.81 4.84 85.56 0.41 3.23 16 9 N -0.68 -20.26 4.79 -495.57 -2.37 -22.63 16 10 C 0.10 3.19 2.82 44.92 0.13 3.31 16 11 C -0.10 -3.87 5.53 30.60 0.17 -3.70 16 12 C -0.08 -4.07 4.82 30.59 0.15 -3.92 16 13 C 0.05 2.59 2.10 -11.54 -0.02 2.56 16 14 C -0.53 -30.74 8.56 25.60 0.22 -30.52 16 15 H 0.04 2.57 7.74 -2.91 -0.02 2.55 16 16 C 0.01 0.67 5.30 84.66 0.45 1.12 16 17 N -0.92 -55.24 11.32 21.45 0.24 -55.00 16 18 Si 0.95 45.69 29.54 68.60 2.03 47.72 16 19 H -0.27 -13.04 7.11 99.48 0.71 -12.33 16 20 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 21 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 22 C -0.09 -3.87 4.98 30.59 0.15 -3.71 16 23 C -0.11 -3.57 5.30 30.59 0.16 -3.41 16 24 C -0.08 -2.10 9.32 22.25 0.21 -1.90 16 25 C -0.14 -3.81 5.89 -19.77 -0.12 -3.93 16 26 C -0.10 -2.33 9.79 71.24 0.70 -1.63 16 27 H 0.06 0.69 7.66 -2.39 -0.02 0.67 16 28 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.06 0.72 7.66 -2.39 -0.02 0.70 16 30 H 0.15 2.37 6.30 -2.91 -0.02 2.36 16 31 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.08 1.10 8.08 -2.39 -0.02 1.08 16 33 H 0.06 1.13 5.25 -2.38 -0.01 1.12 16 34 H 0.07 1.86 7.29 -2.39 -0.02 1.85 16 35 H 0.05 1.11 7.19 -2.38 -0.02 1.09 16 36 H 0.34 9.42 6.41 -89.69 -0.57 8.84 16 37 H 0.05 1.43 7.80 -2.39 -0.02 1.42 16 38 H 0.05 1.74 7.45 -2.39 -0.02 1.72 16 39 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.04 2.33 6.07 -2.39 -0.01 2.31 16 41 H 0.03 1.70 7.60 -2.39 -0.02 1.68 16 42 H -0.02 -0.95 8.14 -2.38 -0.02 -0.97 16 43 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 44 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 45 H 0.05 2.18 7.48 -2.39 -0.02 2.16 16 46 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 47 H 0.08 1.96 8.12 -2.39 -0.02 1.94 16 48 H 0.12 3.47 8.03 -2.91 -0.02 3.45 16 49 H 0.06 1.49 8.14 -2.38 -0.02 1.48 16 50 H 0.07 1.54 7.53 -2.39 -0.02 1.52 16 51 H 0.07 1.51 8.09 -2.39 -0.02 1.49 16 Total: -1.00 -67.49 388.50 3.84 -63.66 By element: Atomic # 1 Polarization: 22.36 SS G_CDS: 0.33 Total: 22.69 kcal Atomic # 6 Polarization: -52.68 SS G_CDS: 4.49 Total: -48.18 kcal Atomic # 7 Polarization: -75.49 SS G_CDS: -2.13 Total: -77.63 kcal Atomic # 8 Polarization: -7.37 SS G_CDS: -0.88 Total: -8.25 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.72 kcal Total: -67.49 3.84 -63.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173334163.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.813 kcal (2) G-P(sol) polarization free energy of solvation -67.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds