Wall clock time and date at job start Tue Mar 31 2020 12:09:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35900 * 117.00010 * 2 1 4 4 C 1.38759 * 120.05365 * 359.72129 * 3 2 1 5 5 C 1.38122 * 119.94194 * 179.69635 * 4 3 2 6 6 C 1.38289 * 120.05411 * 0.60490 * 5 4 3 7 7 C 1.38250 * 120.11271 * 359.67797 * 6 5 4 8 8 C 1.50699 * 119.97171 * 180.02562 * 7 6 5 9 9 C 1.52997 * 109.47008 * 120.01734 * 8 7 6 10 10 C 1.52996 * 109.46734 * 240.01795 * 8 7 6 11 11 N 1.46899 * 109.47393 * 0.02562 * 8 7 6 12 12 C 1.46900 * 111.00211 * 181.30846 * 11 8 7 13 13 C 1.52995 * 109.47105 * 253.81900 * 12 11 8 14 14 C 1.52995 * 109.47672 * 299.99740 * 13 12 11 15 15 C 1.53005 * 109.47214 * 300.00671 * 14 13 12 16 16 C 1.50699 * 109.46620 * 179.97438 * 15 14 13 17 17 H 1.08003 * 119.99703 * 239.98987 * 16 15 14 18 18 C 1.37879 * 120.00364 * 60.00018 * 16 15 14 19 19 N 1.31510 * 119.99955 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00068 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.47048 * 59.99552 * 20 18 16 22 22 H 1.48500 * 109.46930 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.46867 * 299.99792 * 20 18 16 24 24 C 1.53000 * 109.47067 * 59.99565 * 15 14 13 25 25 C 1.52999 * 109.47216 * 299.99808 * 24 15 14 26 26 C 1.38168 * 120.05258 * 0.02562 * 7 6 5 27 27 H 1.08998 * 109.47182 * 300.00200 * 1 2 3 28 28 H 1.09000 * 109.47241 * 60.00396 * 1 2 3 29 29 H 1.09000 * 109.46877 * 179.97438 * 1 2 3 30 30 H 1.07993 * 120.02778 * 359.97438 * 4 3 2 31 31 H 1.07997 * 119.97202 * 180.29741 * 5 4 3 32 32 H 1.08004 * 119.94544 * 179.69604 * 6 5 4 33 33 H 1.08997 * 109.47383 * 59.99706 * 9 8 7 34 34 H 1.09004 * 109.46847 * 179.97438 * 9 8 7 35 35 H 1.08996 * 109.47307 * 299.99155 * 9 8 7 36 36 H 1.08999 * 109.47581 * 66.89856 * 10 8 7 37 37 H 1.09002 * 109.46978 * 186.89672 * 10 8 7 38 38 H 1.08996 * 109.47656 * 306.89268 * 10 8 7 39 39 H 1.00901 * 111.00050 * 57.35484 * 11 8 7 40 40 H 1.08999 * 109.46707 * 13.82562 * 12 11 8 41 41 H 1.09000 * 109.47282 * 60.00508 * 13 12 11 42 42 H 1.09008 * 109.46795 * 180.02562 * 13 12 11 43 43 H 1.08994 * 109.47264 * 179.97438 * 14 13 12 44 44 H 1.09008 * 109.46774 * 60.00278 * 14 13 12 45 45 H 1.09001 * 109.46329 * 299.99230 * 15 14 13 46 46 H 0.96995 * 120.00087 * 180.02562 * 19 18 16 47 47 H 1.09006 * 109.46626 * 180.02562 * 24 15 14 48 48 H 1.08994 * 109.47281 * 60.00227 * 24 15 14 49 49 H 1.09001 * 109.47354 * 300.01055 * 25 24 15 50 50 H 1.08996 * 109.47204 * 180.02562 * 25 24 15 51 51 H 1.07994 * 120.02178 * 180.02562 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 -0.0058 5 6 1.9208 3.6048 0.0005 6 6 3.3019 3.6758 0.0001 7 6 4.0560 2.5171 0.0000 8 6 5.5608 2.5982 0.0000 9 6 6.1088 1.9049 1.2490 10 6 6.1088 1.9060 -1.2495 11 7 5.9753 4.0075 0.0008 12 6 7.4392 4.1258 -0.0304 13 6 7.9454 4.5578 1.3472 14 6 7.3323 5.9105 1.7149 15 6 7.7374 6.9544 0.6722 16 6 7.1329 8.2865 1.0341 17 1 6.4558 8.7760 0.3497 18 6 7.4445 8.8806 2.2387 19 7 8.2688 8.2845 3.0721 20 14 6.6957 10.5322 2.6869 21 1 5.2159 10.4128 2.7178 22 1 7.1862 10.9514 4.0244 23 1 7.0895 11.5452 1.6749 24 6 7.2311 6.5223 -0.7054 25 6 7.8443 5.1697 -1.0731 26 6 3.4311 1.2848 -0.0002 27 1 -0.3633 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 0.2129 2.3203 -0.0108 31 1 1.3339 4.5114 0.0008 32 1 3.7922 4.6381 0.0001 33 1 5.8013 0.8592 1.2486 34 1 7.1973 1.9632 1.2488 35 1 5.7184 2.3982 2.1391 36 1 5.8189 2.4717 -2.1350 37 1 7.1961 1.8563 -1.1900 38 1 5.7020 0.8968 -1.3138 39 1 5.5898 4.4973 0.7943 40 1 7.8760 3.1621 -0.2923 41 1 7.6568 3.8141 2.0900 42 1 9.0316 4.6460 1.3239 43 1 7.6926 6.2180 2.6965 44 1 6.2460 5.8227 1.7381 45 1 8.8237 7.0421 0.6491 46 1 8.4877 8.7022 3.9197 47 1 7.5201 7.2658 -1.4483 48 1 6.1449 6.4346 -0.6822 49 1 8.9305 5.2574 -1.0962 50 1 7.4839 4.8621 -2.0547 51 1 4.0206 0.3800 0.0001 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173334291.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:08 Heat of formation + Delta-G solvation = -38.574795 kcal Electronic energy + Delta-G solvation = -27805.892026 eV Core-core repulsion = 24283.132672 eV Total energy + Delta-G solvation = -3522.759354 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.38690 -40.33986 -38.68639 -36.80322 -34.70735 -32.50293 -31.38683 -31.18029 -30.36245 -29.35175 -28.11955 -27.96291 -26.51549 -24.04343 -23.10476 -22.99165 -22.25458 -20.77291 -19.23843 -18.85014 -18.33867 -17.23874 -16.87746 -16.80283 -16.59663 -16.45575 -15.72962 -15.45195 -15.09307 -14.65079 -14.58681 -14.52213 -14.31728 -14.26052 -13.84925 -13.63611 -13.35001 -13.18994 -13.09804 -12.93914 -12.82713 -12.69384 -12.48818 -12.45091 -12.36270 -12.22830 -11.96211 -11.84690 -11.76738 -11.68554 -11.56819 -11.39872 -11.04112 -10.52962 -10.49279 -10.25044 -9.72841 -9.13550 -9.08449 -8.02885 -6.16015 0.41433 0.56661 1.41725 1.42375 1.49896 2.38637 2.45883 2.85643 3.22621 3.30482 3.70362 3.93050 4.09125 4.14301 4.19731 4.23198 4.29624 4.36211 4.37345 4.41482 4.53143 4.59303 4.64946 4.70592 4.73680 4.75471 4.77206 4.85030 4.88972 4.94942 5.00419 5.03857 5.10356 5.13918 5.18973 5.28663 5.34587 5.35219 5.39519 5.42342 5.52051 5.59927 5.62763 5.69143 5.74472 5.80708 5.86603 6.14827 6.29489 6.39776 6.50488 6.51200 6.58685 6.97285 7.51405 8.99997 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.015976 B = 0.003400 C = 0.003030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.155248 B = 8233.660290 C = 9239.353201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.335 6.335 3 C 0.113 3.887 4 C -0.214 4.214 5 C -0.088 4.088 6 C -0.156 4.156 7 C -0.031 4.031 8 C 0.149 3.851 9 C -0.172 4.172 10 C -0.131 4.131 11 N -0.671 5.671 12 C 0.100 3.900 13 C -0.134 4.134 14 C -0.093 4.093 15 C 0.049 3.951 16 C -0.529 4.529 17 H 0.047 0.953 18 C 0.013 3.987 19 N -0.917 5.917 20 Si 0.947 3.053 21 H -0.272 1.272 22 H -0.286 1.286 23 H -0.274 1.274 24 C -0.093 4.093 25 C -0.095 4.095 26 C -0.157 4.157 27 H 0.061 0.939 28 H 0.063 0.937 29 H 0.119 0.881 30 H 0.146 0.854 31 H 0.137 0.863 32 H 0.124 0.876 33 H 0.072 0.928 34 H 0.065 0.935 35 H 0.043 0.957 36 H 0.057 0.943 37 H 0.066 0.934 38 H 0.071 0.929 39 H 0.341 0.659 40 H 0.085 0.915 41 H 0.057 0.943 42 H 0.048 0.952 43 H 0.051 0.949 44 H 0.030 0.970 45 H -0.015 1.015 46 H 0.258 0.742 47 H 0.029 0.971 48 H 0.054 0.946 49 H 0.049 0.951 50 H 0.066 0.934 51 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.378 -18.230 -6.621 23.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.250 6.250 3 C 0.068 3.932 4 C -0.233 4.233 5 C -0.106 4.106 6 C -0.174 4.174 7 C -0.032 4.032 8 C 0.057 3.943 9 C -0.231 4.231 10 C -0.188 4.188 11 N -0.304 5.304 12 C -0.009 4.009 13 C -0.173 4.173 14 C -0.131 4.131 15 C 0.031 3.969 16 C -0.568 4.568 17 H 0.065 0.935 18 C -0.186 4.186 19 N -0.557 5.557 20 Si 0.773 3.227 21 H -0.197 1.197 22 H -0.211 1.211 23 H -0.200 1.200 24 C -0.130 4.130 25 C -0.133 4.133 26 C -0.176 4.176 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.137 0.863 30 H 0.164 0.836 31 H 0.155 0.845 32 H 0.142 0.858 33 H 0.091 0.909 34 H 0.084 0.916 35 H 0.062 0.938 36 H 0.076 0.924 37 H 0.085 0.915 38 H 0.090 0.910 39 H 0.162 0.838 40 H 0.103 0.897 41 H 0.075 0.925 42 H 0.067 0.933 43 H 0.070 0.930 44 H 0.049 0.951 45 H 0.003 0.997 46 H 0.067 0.933 47 H 0.048 0.952 48 H 0.072 0.928 49 H 0.068 0.932 50 H 0.085 0.915 51 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -12.295 -18.317 -7.134 23.186 hybrid contribution -0.125 1.330 1.560 2.054 sum -12.420 -16.987 -5.574 21.769 Atomic orbital electron populations 1.23308 0.76664 1.05432 1.02092 1.86027 1.23278 1.26757 1.88891 1.19072 0.92381 0.84659 0.97045 1.21425 1.00906 0.91920 1.09047 1.21198 0.94488 0.97892 0.96976 1.21173 0.94052 0.99026 1.03184 1.19585 0.94754 0.92265 0.96582 1.19827 0.89921 0.88730 0.95779 1.22600 1.01609 1.01575 0.97327 1.21902 1.01037 0.99918 0.95977 1.60843 1.09349 1.10844 1.49389 1.21458 0.87508 0.98237 0.93690 1.22150 1.00132 0.97487 0.97528 1.21294 0.97281 0.93404 1.01170 1.18588 0.93576 0.92803 0.91976 1.21615 1.27150 1.05536 1.02462 0.93514 1.25687 0.95658 1.00570 0.96638 1.70013 1.36159 1.39596 1.09897 0.85790 0.79002 0.80791 0.77126 1.19691 1.21148 1.19974 1.21352 0.99914 0.95298 0.96462 1.21472 0.98703 0.94842 0.98309 1.20246 0.91621 0.98094 1.07594 0.92021 0.91856 0.86321 0.83628 0.84486 0.85781 0.90881 0.91559 0.93757 0.92428 0.91470 0.91031 0.83755 0.89678 0.92483 0.93338 0.93032 0.95099 0.99715 0.93328 0.95235 0.92768 0.93202 0.91529 0.84707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 113.37 1.11 1.34 16 2 O -0.34 -6.93 10.50 -92.42 -0.97 -7.90 16 3 C 0.11 2.62 6.69 22.51 0.15 2.77 16 4 C -0.21 -4.55 9.04 22.37 0.20 -4.35 16 5 C -0.09 -2.06 10.04 22.25 0.22 -1.84 16 6 C -0.16 -4.24 9.15 22.28 0.20 -4.03 16 7 C -0.03 -0.80 4.77 -19.88 -0.09 -0.90 16 8 C 0.15 3.66 0.77 2.78 0.00 3.66 16 9 C -0.17 -4.02 7.33 71.98 0.53 -3.49 16 10 C -0.13 -2.82 8.10 71.98 0.58 -2.23 16 11 N -0.67 -19.80 4.13 -451.99 -1.87 -21.67 16 12 C 0.10 3.08 1.89 44.92 0.08 3.17 16 13 C -0.13 -4.89 5.26 30.59 0.16 -4.73 16 14 C -0.09 -4.31 4.79 30.59 0.15 -4.16 16 15 C 0.05 2.46 2.10 -11.54 -0.02 2.44 16 16 C -0.53 -29.66 8.56 25.60 0.22 -29.44 16 17 H 0.05 2.60 7.74 -2.91 -0.02 2.58 16 18 C 0.01 0.71 5.30 84.66 0.45 1.16 16 19 N -0.92 -53.65 11.32 21.45 0.24 -53.41 16 20 Si 0.95 44.43 29.54 68.60 2.03 46.46 16 21 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 22 H -0.29 -13.18 7.11 99.48 0.71 -12.48 16 23 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 24 C -0.09 -3.87 4.98 30.59 0.15 -3.72 16 25 C -0.10 -3.21 5.64 30.60 0.17 -3.04 16 26 C -0.16 -3.73 8.57 22.36 0.19 -3.54 16 27 H 0.06 0.65 7.67 -2.39 -0.02 0.63 16 28 H 0.06 0.64 7.65 -2.39 -0.02 0.62 16 29 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.15 2.28 6.30 -2.91 -0.02 2.27 16 31 H 0.14 2.72 8.06 -2.91 -0.02 2.70 16 32 H 0.12 3.72 6.43 -2.91 -0.02 3.70 16 33 H 0.07 1.46 7.39 -2.39 -0.02 1.44 16 34 H 0.07 1.52 6.03 -2.39 -0.01 1.51 16 35 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.07 1.35 6.30 -2.39 -0.02 1.33 16 38 H 0.07 1.32 7.17 -2.39 -0.02 1.30 16 39 H 0.34 11.38 5.08 -89.69 -0.46 10.93 16 40 H 0.09 2.25 4.90 -2.39 -0.01 2.24 16 41 H 0.06 1.90 6.58 -2.39 -0.02 1.89 16 42 H 0.05 1.84 8.14 -2.38 -0.02 1.82 16 43 H 0.05 2.77 6.07 -2.39 -0.01 2.76 16 44 H 0.03 1.41 6.30 -2.38 -0.02 1.39 16 45 H -0.02 -0.87 8.14 -2.39 -0.02 -0.89 16 46 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 47 H 0.03 1.25 8.14 -2.38 -0.02 1.23 16 48 H 0.05 2.28 7.60 -2.39 -0.02 2.26 16 49 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 50 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 51 H 0.14 2.86 7.06 -2.91 -0.02 2.84 16 Total: -1.00 -62.66 377.37 4.36 -58.30 By element: Atomic # 1 Polarization: 28.70 SS G_CDS: 0.46 Total: 29.16 kcal Atomic # 6 Polarization: -55.40 SS G_CDS: 4.46 Total: -50.94 kcal Atomic # 7 Polarization: -73.46 SS G_CDS: -1.62 Total: -75.08 kcal Atomic # 8 Polarization: -6.93 SS G_CDS: -0.97 Total: -7.90 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -62.66 4.36 -58.30 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173334291.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.729 kcal (2) G-P(sol) polarization free energy of solvation -62.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds