Wall clock time and date at job start Tue Mar 31 2020 12:28:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.47110 * 2 1 4 4 C 1.52996 * 109.47100 * 179.97438 * 3 2 1 5 5 C 1.53003 * 109.47100 * 179.97438 * 4 3 2 6 6 C 1.52996 * 109.47100 * 180.02562 * 5 4 3 7 7 C 1.53004 * 109.46992 * 179.97438 * 6 5 4 8 8 C 1.53007 * 109.47233 * 179.97438 * 7 6 5 9 9 H 1.09004 * 109.46831 * 55.00220 * 8 7 6 10 10 C 1.52999 * 109.46984 * 295.00543 * 8 7 6 11 11 C 1.50695 * 109.47425 * 175.00326 * 8 7 6 12 12 O 1.21290 * 119.99830 * 0.02562 * 11 8 7 13 13 N 1.34774 * 120.00186 * 179.97438 * 11 8 7 14 14 C 1.39939 * 119.99932 * 174.89690 * 13 11 8 15 15 C 1.39294 * 119.94488 * 325.52602 * 14 13 11 16 16 C 1.38491 * 120.41988 * 179.76225 * 15 14 13 17 17 C 1.37677 * 120.32776 * 0.51415 * 16 15 14 18 18 C 1.40746 * 119.88450 * 359.74795 * 17 16 15 19 19 C 1.41408 * 120.20904 * 180.02562 * 18 17 16 20 20 H 1.07998 * 119.99536 * 205.16612 * 19 18 17 21 21 C 1.39925 * 120.00118 * 25.16672 * 19 18 17 22 22 N 1.30824 * 120.00094 * 16.80227 * 21 19 18 23 23 Si 1.86802 * 119.99823 * 196.79762 * 21 19 18 24 24 H 1.48496 * 109.46914 * 59.99963 * 23 21 19 25 25 H 1.48495 * 109.46845 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47114 * 299.99911 * 23 21 19 27 27 C 1.38233 * 119.94505 * 145.80378 * 14 13 11 28 28 H 1.08997 * 109.46926 * 300.00157 * 1 2 3 29 29 H 1.08996 * 109.47051 * 60.00011 * 1 2 3 30 30 H 1.08995 * 109.46793 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47390 * 239.99903 * 2 1 3 32 32 H 1.09000 * 109.47048 * 119.99473 * 2 1 3 33 33 H 1.09000 * 109.47477 * 59.99356 * 3 2 1 34 34 H 1.09009 * 109.46955 * 299.99679 * 3 2 1 35 35 H 1.09001 * 109.47338 * 59.99941 * 4 3 2 36 36 H 1.09000 * 109.47109 * 299.99505 * 4 3 2 37 37 H 1.09000 * 109.47477 * 59.99425 * 5 4 3 38 38 H 1.09009 * 109.46955 * 299.99749 * 5 4 3 39 39 H 1.08998 * 109.47628 * 300.00057 * 6 5 4 40 40 H 1.09001 * 109.47338 * 59.99941 * 6 5 4 41 41 H 1.08996 * 109.47657 * 300.00236 * 7 6 5 42 42 H 1.08997 * 109.46960 * 60.00482 * 7 6 5 43 43 H 1.09005 * 109.47602 * 59.99761 * 10 8 7 44 44 H 1.09007 * 109.47037 * 179.97438 * 10 8 7 45 45 H 1.08996 * 109.47472 * 299.99972 * 10 8 7 46 46 H 0.96997 * 120.00089 * 354.90694 * 13 11 8 47 47 H 1.07996 * 119.78913 * 0.02562 * 15 14 13 48 48 H 1.08003 * 119.83126 * 180.25738 * 16 15 14 49 49 H 1.07999 * 120.06309 * 179.76108 * 17 16 15 50 50 H 0.97007 * 120.00066 * 180.02562 * 22 21 19 51 51 H 1.08003 * 120.16305 * 359.95400 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8850 0.0000 6 6 5.6100 2.8850 0.0000 7 6 6.1200 4.3276 -0.0013 8 6 7.6500 4.3277 -0.0006 9 1 8.0137 3.7373 -0.8418 10 6 8.1595 3.7193 1.3075 11 6 8.1524 5.7429 -0.1257 12 8 7.3643 6.6612 -0.2068 13 7 9.4775 5.9883 -0.1463 14 6 9.9449 7.2883 -0.3693 15 6 9.2511 8.1391 -1.2267 16 6 9.7022 9.4292 -1.4507 17 6 10.8481 9.8816 -0.8361 18 6 11.5625 9.0313 0.0286 19 6 12.7400 9.4891 0.6639 20 1 13.4929 8.7820 0.9797 21 6 12.9297 10.8579 0.8835 22 7 11.9134 11.6787 0.8131 23 14 14.6341 11.5133 1.2771 24 1 15.5564 11.1984 0.1567 25 1 14.5672 12.9848 1.4653 26 1 15.1333 10.8776 2.5229 27 6 11.0975 7.7241 0.2571 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.6767 1.9564 0.8899 34 1 1.6767 1.9564 -0.8901 35 1 3.9338 0.9286 -0.8891 36 1 3.9330 0.9289 0.8909 37 1 3.7163 3.3995 0.8895 38 1 3.7171 3.3984 -0.8905 39 1 5.9734 2.3716 0.8902 40 1 5.9734 2.3708 -0.8897 41 1 5.7566 4.8407 -0.8916 42 1 5.7567 4.8421 0.8883 43 1 7.7961 2.6956 1.3980 44 1 9.2495 3.7189 1.3078 45 1 7.7958 4.3095 2.1486 46 1 10.1071 5.2638 -0.0067 47 1 8.3534 7.7919 -1.7165 48 1 9.1545 10.0822 -2.1141 49 1 11.1981 10.8872 -1.0168 50 1 12.0449 12.6277 0.9649 51 1 11.6382 7.0638 0.9191 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001181120397.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:37 Heat of formation + Delta-G solvation = -84.978621 kcal Electronic energy + Delta-G solvation = -25200.531701 eV Core-core repulsion = 21675.760126 eV Total energy + Delta-G solvation = -3524.771575 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.39802 -39.19831 -37.83242 -36.34715 -36.07504 -34.90082 -33.65447 -31.78450 -30.67294 -29.60169 -27.20612 -27.18851 -25.43867 -23.57619 -22.85805 -22.23877 -21.86290 -21.49224 -20.62040 -19.41059 -18.10802 -17.43176 -16.98863 -16.81550 -16.60125 -16.27097 -15.71191 -15.58651 -15.11426 -14.80346 -14.68003 -14.55937 -14.42194 -14.08757 -13.90603 -13.56573 -13.55257 -13.05205 -13.00256 -12.94640 -12.90089 -12.81168 -12.68627 -12.29380 -12.25021 -12.12141 -11.96273 -11.89342 -11.74966 -11.66484 -11.47056 -11.37736 -11.26088 -11.15130 -11.11198 -10.91347 -10.50770 -9.43456 -8.77587 -8.60373 -6.36801 0.86536 0.96522 1.39727 1.50890 1.53747 1.81527 2.19705 2.28197 2.75431 3.64738 3.68464 3.71982 3.95217 4.03512 4.07255 4.19387 4.28240 4.35986 4.42022 4.43809 4.54902 4.59915 4.65591 4.75739 4.81585 4.83851 4.89186 4.94810 4.99203 5.00306 5.03594 5.08817 5.11234 5.14282 5.16030 5.17361 5.22069 5.27546 5.29948 5.33990 5.38010 5.41815 5.50293 5.56466 5.59591 5.74633 5.83926 6.07213 6.10142 6.28882 6.62232 6.72178 6.91902 6.98166 7.32753 8.34347 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.039585 B = 0.001724 C = 0.001689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.169671 B =16234.240345 C =16571.736081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.124 4.124 3 C -0.122 4.122 4 C -0.114 4.114 5 C -0.121 4.121 6 C -0.110 4.110 7 C -0.098 4.098 8 C -0.097 4.097 9 H 0.124 0.876 10 C -0.144 4.144 11 C 0.503 3.497 12 O -0.571 6.571 13 N -0.660 5.660 14 C 0.162 3.838 15 C -0.241 4.241 16 C -0.099 4.099 17 C -0.196 4.196 18 C 0.095 3.905 19 C -0.497 4.497 20 H 0.082 0.918 21 C 0.034 3.966 22 N -0.828 5.828 23 Si 0.986 3.014 24 H -0.258 1.258 25 H -0.270 1.270 26 H -0.258 1.258 27 C -0.255 4.255 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.054 0.946 38 H 0.053 0.947 39 H 0.079 0.921 40 H 0.074 0.926 41 H 0.049 0.951 42 H 0.050 0.950 43 H 0.098 0.902 44 H 0.070 0.930 45 H 0.046 0.954 46 H 0.419 0.581 47 H 0.100 0.900 48 H 0.107 0.893 49 H 0.104 0.896 50 H 0.288 0.712 51 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.964 -21.991 -0.254 25.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.162 4.162 3 C -0.160 4.160 4 C -0.152 4.152 5 C -0.159 4.159 6 C -0.147 4.147 7 C -0.136 4.136 8 C -0.118 4.118 9 H 0.142 0.858 10 C -0.201 4.201 11 C 0.292 3.708 12 O -0.449 6.449 13 N -0.306 5.306 14 C 0.069 3.931 15 C -0.262 4.262 16 C -0.118 4.118 17 C -0.216 4.216 18 C 0.092 3.908 19 C -0.526 4.526 20 H 0.100 0.900 21 C -0.181 4.181 22 N -0.454 5.454 23 Si 0.806 3.194 24 H -0.182 1.182 25 H -0.195 1.195 26 H -0.182 1.182 27 C -0.277 4.277 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.098 0.902 40 H 0.092 0.908 41 H 0.068 0.932 42 H 0.069 0.931 43 H 0.117 0.883 44 H 0.089 0.911 45 H 0.065 0.935 46 H 0.257 0.743 47 H 0.118 0.882 48 H 0.125 0.875 49 H 0.122 0.878 50 H 0.099 0.901 51 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -12.634 -21.156 -0.278 24.642 hybrid contribution 0.728 0.790 0.174 1.088 sum -11.906 -20.365 -0.103 23.591 Atomic orbital electron populations 1.21796 0.95866 1.01854 1.01713 1.21537 0.95938 0.96580 1.02139 1.21639 0.95670 0.96999 1.01684 1.21565 0.95134 0.96066 1.02417 1.21593 0.95465 0.97275 1.01555 1.21608 0.95281 0.94534 1.03321 1.21376 0.92225 0.98176 1.01791 1.21394 0.97734 0.89952 1.02727 0.85804 1.21875 1.01895 1.02326 0.93999 1.21766 0.81432 0.93059 0.74516 1.90694 1.56142 1.48207 1.49827 1.43513 1.07950 1.08386 1.70717 1.17503 0.94654 0.85372 0.95573 1.20423 1.03417 0.95749 1.06623 1.20804 0.96356 0.95221 0.99385 1.21299 0.98286 1.00737 1.01231 1.17771 0.92447 0.91089 0.89515 1.19801 1.03857 0.93261 1.35704 0.89977 1.26822 1.02325 0.96728 0.92221 1.69900 1.33564 1.05747 1.36154 0.85200 0.76881 0.77439 0.79859 1.18249 1.19457 1.18182 1.20879 1.00535 0.98613 1.07660 0.92900 0.92922 0.92293 0.91895 0.91845 0.92473 0.92535 0.91621 0.91484 0.92695 0.92847 0.90223 0.90770 0.93175 0.93134 0.88291 0.91120 0.93489 0.74348 0.88220 0.87473 0.87811 0.90136 0.87120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.91 71.98 0.71 -0.88 16 2 C -0.12 -1.33 5.93 30.60 0.18 -1.15 16 3 C -0.12 -1.51 5.21 30.59 0.16 -1.35 16 4 C -0.11 -1.38 5.21 30.59 0.16 -1.22 16 5 C -0.12 -1.83 5.21 30.59 0.16 -1.67 16 6 C -0.11 -1.61 4.97 30.59 0.15 -1.45 16 7 C -0.10 -2.14 4.03 30.60 0.12 -2.02 16 8 C -0.10 -2.09 2.73 -11.54 -0.03 -2.12 16 9 H 0.12 2.02 8.14 -2.38 -0.02 2.00 16 10 C -0.14 -2.39 8.84 71.98 0.64 -1.76 16 11 C 0.50 17.15 6.88 87.66 0.60 17.75 16 12 O -0.57 -25.23 13.67 -3.06 -0.04 -25.27 16 13 N -0.66 -23.07 5.26 -303.66 -1.60 -24.66 16 14 C 0.16 7.50 6.25 38.10 0.24 7.73 16 15 C -0.24 -11.95 8.66 22.58 0.20 -11.76 16 16 C -0.10 -5.06 10.01 22.20 0.22 -4.84 16 17 C -0.20 -10.83 8.69 22.75 0.20 -10.63 16 18 C 0.09 5.23 5.57 -21.30 -0.12 5.11 16 19 C -0.50 -26.82 9.05 23.46 0.21 -26.61 16 20 H 0.08 4.17 7.90 -2.91 -0.02 4.15 16 21 C 0.03 1.72 5.16 85.25 0.44 2.16 16 22 N -0.83 -44.41 10.94 21.82 0.24 -44.17 16 23 Si 0.99 38.13 29.59 68.60 2.03 40.16 16 24 H -0.26 -9.69 7.11 99.48 0.71 -8.98 16 25 H -0.27 -9.97 7.11 99.48 0.71 -9.26 16 26 H -0.26 -9.56 7.11 99.48 0.71 -8.85 16 27 C -0.26 -12.60 9.70 22.85 0.22 -12.38 16 28 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.06 0.64 8.14 -2.39 -0.02 0.63 16 32 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 35 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 39 H 0.08 0.95 6.56 -2.39 -0.02 0.93 16 40 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.05 1.30 7.96 -2.39 -0.02 1.28 16 42 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.10 1.08 6.56 -2.38 -0.02 1.07 16 44 H 0.07 1.05 7.46 -2.38 -0.02 1.03 16 45 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 46 H 0.42 11.07 8.10 -92.71 -0.75 10.32 16 47 H 0.10 4.89 6.48 -2.91 -0.02 4.87 16 48 H 0.11 4.95 8.06 -2.91 -0.02 4.93 16 49 H 0.10 5.94 6.17 -2.91 -0.02 5.92 16 50 H 0.29 14.00 8.30 -92.70 -0.77 13.23 16 51 H 0.11 4.95 8.06 -2.91 -0.02 4.93 16 Total: -1.00 -68.13 406.54 5.23 -62.90 By element: Atomic # 1 Polarization: 37.98 SS G_CDS: 0.13 Total: 38.12 kcal Atomic # 6 Polarization: -51.54 SS G_CDS: 4.47 Total: -47.07 kcal Atomic # 7 Polarization: -67.48 SS G_CDS: -1.36 Total: -68.84 kcal Atomic # 8 Polarization: -25.23 SS G_CDS: -0.04 Total: -25.27 kcal Atomic # 14 Polarization: 38.13 SS G_CDS: 2.03 Total: 40.16 kcal Total: -68.13 5.23 -62.90 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181120397.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.075 kcal (2) G-P(sol) polarization free energy of solvation -68.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds