Wall clock time and date at job start Tue Mar 31 2020 12:28:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.47222 * 2 1 4 4 C 1.52996 * 109.47469 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.47469 * 179.97438 * 4 3 2 6 6 C 1.52994 * 109.47309 * 180.02562 * 5 4 3 7 7 C 1.52996 * 109.47177 * 180.02562 * 6 5 4 8 8 C 1.53001 * 109.47391 * 179.97438 * 7 6 5 9 9 H 1.09001 * 109.47034 * 304.99707 * 8 7 6 10 10 C 1.53006 * 109.47304 * 64.99466 * 8 7 6 11 11 C 1.50695 * 109.47357 * 184.99617 * 8 7 6 12 12 O 1.21281 * 119.99961 * 0.02562 * 11 8 7 13 13 N 1.34780 * 120.00176 * 180.27049 * 11 8 7 14 14 C 1.39932 * 120.00432 * 174.61499 * 13 11 8 15 15 C 1.39291 * 119.94584 * 325.55369 * 14 13 11 16 16 C 1.38484 * 120.42924 * 179.75906 * 15 14 13 17 17 C 1.37684 * 120.32223 * 0.52017 * 16 15 14 18 18 C 1.40743 * 119.88220 * 359.73554 * 17 16 15 19 19 C 1.41406 * 120.20686 * 180.02562 * 18 17 16 20 20 H 1.08006 * 120.00264 * 25.13050 * 19 18 17 21 21 C 1.39932 * 119.99813 * 205.13594 * 19 18 17 22 22 N 1.30828 * 120.00407 * 16.78457 * 21 19 18 23 23 Si 1.86802 * 119.99954 * 196.79044 * 21 19 18 24 24 H 1.48499 * 109.47447 * 59.99486 * 23 21 19 25 25 H 1.48506 * 109.47100 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.46848 * 299.99449 * 23 21 19 27 27 C 1.38241 * 119.95314 * 145.82878 * 14 13 11 28 28 H 1.08995 * 109.47030 * 300.00175 * 1 2 3 29 29 H 1.08998 * 109.46752 * 60.00225 * 1 2 3 30 30 H 1.09004 * 109.46686 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47119 * 240.00145 * 2 1 3 32 32 H 1.08998 * 109.47304 * 120.00303 * 2 1 3 33 33 H 1.09003 * 109.46956 * 60.00045 * 3 2 1 34 34 H 1.08998 * 109.47229 * 300.00349 * 3 2 1 35 35 H 1.09003 * 109.46752 * 60.00218 * 4 3 2 36 36 H 1.08998 * 109.47424 * 300.00528 * 4 3 2 37 37 H 1.08999 * 109.46596 * 59.99998 * 5 4 3 38 38 H 1.09008 * 109.46774 * 300.00335 * 5 4 3 39 39 H 1.08995 * 109.47171 * 59.99685 * 6 5 4 40 40 H 1.09005 * 109.46716 * 300.00039 * 6 5 4 41 41 H 1.08995 * 109.47616 * 59.99603 * 7 6 5 42 42 H 1.09005 * 109.47040 * 299.99486 * 7 6 5 43 43 H 1.08997 * 109.47305 * 180.02562 * 10 8 7 44 44 H 1.08996 * 109.46754 * 300.00570 * 10 8 7 45 45 H 1.09001 * 109.46878 * 60.00145 * 10 8 7 46 46 H 0.97010 * 119.99721 * 354.62214 * 13 11 8 47 47 H 1.08001 * 119.78458 * 0.02562 * 15 14 13 48 48 H 1.08005 * 119.84120 * 180.23373 * 16 15 14 49 49 H 1.08000 * 120.05680 * 179.76932 * 17 16 15 50 50 H 0.96997 * 120.00726 * 180.02562 * 22 21 19 51 51 H 1.08008 * 120.15573 * 359.95746 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0801 2.8850 0.0000 6 6 5.6100 2.8850 0.0000 7 6 6.1200 4.3275 0.0000 8 6 7.6500 4.3276 0.0006 9 1 8.0130 3.7383 0.8427 10 6 8.1606 3.7177 -1.3064 11 6 8.1522 5.7430 0.1244 12 8 7.3641 6.6613 0.2047 13 7 9.4773 5.9889 0.1409 14 6 9.9443 7.3080 0.1420 15 6 9.2471 8.2930 -0.5536 16 6 9.6975 9.6025 -0.5551 17 6 10.8463 9.9433 0.1229 18 6 11.5641 8.9577 0.8258 19 6 12.7446 9.3001 1.5250 20 1 12.8925 10.3122 1.8718 21 6 13.7212 8.3277 1.7673 22 7 13.7149 7.2103 1.0869 23 14 15.0339 8.6249 3.0627 24 1 14.3885 8.8227 4.3854 25 1 15.9417 7.4513 3.1259 26 1 15.8150 9.8368 2.7069 27 6 11.0999 7.6305 0.8288 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9563 -0.8899 35 1 3.9337 0.9286 -0.8892 36 1 3.9331 0.9288 0.8908 37 1 3.7163 3.3993 0.8895 38 1 3.7170 3.3983 -0.8905 39 1 5.9733 2.3708 -0.8897 40 1 5.9733 2.3716 0.8903 41 1 5.7567 4.8414 0.8899 42 1 5.7567 4.8413 -0.8901 43 1 9.2506 3.7173 -1.3057 44 1 7.7973 2.6939 -1.3958 45 1 7.7976 4.3069 -2.1485 46 1 10.1074 5.2513 0.1518 47 1 8.3471 8.0345 -1.0918 48 1 9.1474 10.3594 -1.0946 49 1 11.1957 10.9652 0.1158 50 1 14.3916 6.5361 1.2551 51 1 11.6432 6.8667 1.3654 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181120400.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:42 Heat of formation + Delta-G solvation = -71.888973 kcal Electronic energy + Delta-G solvation = -25389.450709 eV Core-core repulsion = 21865.246744 eV Total energy + Delta-G solvation = -3524.203965 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.86528 -37.55556 -36.94715 -35.41054 -34.23060 -33.36442 -32.84402 -29.81502 -29.49831 -28.17918 -26.43996 -25.25043 -24.42583 -22.42447 -21.31000 -21.24105 -21.01810 -20.17430 -19.22892 -17.38681 -16.80863 -16.34069 -15.80341 -15.36915 -15.06613 -14.80837 -14.51409 -14.39161 -14.06626 -13.79379 -13.66335 -13.21813 -13.12583 -12.80043 -12.65189 -12.34424 -12.31703 -12.21557 -12.06790 -11.66063 -11.53184 -11.47160 -11.23870 -11.21274 -11.11371 -11.06403 -10.90560 -10.77860 -10.69519 -10.61068 -10.52784 -10.45572 -10.01281 -9.71173 -9.36648 -9.14509 -8.85972 -7.36808 -6.99155 -6.67947 -4.36355 2.61170 2.87629 3.05883 3.09567 3.22138 3.40510 3.71993 3.93593 4.37057 4.57611 4.64976 4.71060 4.78483 4.82662 4.87429 4.99612 5.09042 5.16018 5.19915 5.39680 5.41098 5.46427 5.48909 5.53999 5.63163 5.68652 5.71018 5.75021 5.76438 5.79475 5.87432 5.92974 5.98555 5.99349 6.10752 6.14303 6.29624 6.30884 6.38278 6.65516 6.72703 6.93064 7.06699 7.09744 7.26950 7.64420 7.72186 7.94781 8.04196 8.18892 8.35619 8.58824 8.80619 8.89931 8.98072 10.19784 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.024654 B = 0.001904 C = 0.001828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.433360 B =14702.983888 C =15313.246106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.126 4.126 3 C -0.122 4.122 4 C -0.120 4.120 5 C -0.120 4.120 6 C -0.120 4.120 7 C -0.099 4.099 8 C -0.111 4.111 9 H 0.093 0.907 10 C -0.145 4.145 11 C 0.508 3.492 12 O -0.527 6.527 13 N -0.665 5.665 14 C 0.145 3.855 15 C -0.226 4.226 16 C -0.087 4.087 17 C -0.229 4.229 18 C 0.120 3.880 19 C -0.464 4.464 20 H 0.078 0.922 21 C 0.077 3.923 22 N -0.800 5.800 23 Si 0.907 3.093 24 H -0.264 1.264 25 H -0.279 1.279 26 H -0.266 1.266 27 C -0.182 4.182 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.062 0.938 38 H 0.061 0.939 39 H 0.064 0.936 40 H 0.060 0.940 41 H 0.070 0.930 42 H 0.068 0.932 43 H 0.061 0.939 44 H 0.066 0.934 45 H 0.060 0.940 46 H 0.401 0.599 47 H 0.100 0.900 48 H 0.091 0.909 49 H 0.093 0.907 50 H 0.279 0.721 51 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.035 -15.455 -2.272 21.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C -0.159 4.159 4 C -0.157 4.157 5 C -0.158 4.158 6 C -0.158 4.158 7 C -0.137 4.137 8 C -0.132 4.132 9 H 0.112 0.888 10 C -0.202 4.202 11 C 0.295 3.705 12 O -0.403 6.403 13 N -0.309 5.309 14 C 0.054 3.946 15 C -0.247 4.247 16 C -0.105 4.105 17 C -0.249 4.249 18 C 0.117 3.883 19 C -0.494 4.494 20 H 0.096 0.904 21 C -0.140 4.140 22 N -0.426 5.426 23 Si 0.732 3.268 24 H -0.189 1.189 25 H -0.204 1.204 26 H -0.190 1.190 27 C -0.204 4.204 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.079 0.921 41 H 0.089 0.911 42 H 0.087 0.913 43 H 0.080 0.920 44 H 0.085 0.915 45 H 0.079 0.921 46 H 0.236 0.764 47 H 0.118 0.882 48 H 0.109 0.891 49 H 0.111 0.889 50 H 0.090 0.910 51 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -15.483 -15.047 -2.268 21.709 hybrid contribution 1.087 -0.300 0.569 1.263 sum -14.396 -15.347 -1.700 21.110 Atomic orbital electron populations 1.21786 0.96033 1.01465 1.01812 1.21547 0.95752 0.97137 1.01896 1.21642 0.95668 0.96539 1.02086 1.21615 0.95138 0.97084 1.01911 1.21599 0.95506 0.96444 1.02244 1.21667 0.95276 0.96804 1.02011 1.21389 0.92421 0.96321 1.03566 1.21327 0.97690 0.93871 1.00318 0.88846 1.21820 1.01375 1.00964 0.96046 1.20639 0.82399 0.91097 0.76390 1.90688 1.55166 1.46239 1.48222 1.43541 1.06872 1.07897 1.72553 1.17626 0.95755 0.82520 0.98732 1.20287 1.02997 0.93117 1.08346 1.20419 0.96157 0.94816 0.99149 1.21036 0.99413 0.98809 1.05618 1.17357 0.91458 0.90584 0.88869 1.19505 1.01106 0.96848 1.31963 0.90425 1.25864 0.98610 0.94369 0.95118 1.69804 1.32243 1.07081 1.33492 0.86385 0.79960 0.78748 0.81708 1.18905 1.20421 1.19018 1.21072 0.96688 0.98490 1.04136 0.92777 0.92792 0.92917 0.92150 0.92142 0.92054 0.92061 0.92140 0.92118 0.91969 0.91989 0.91767 0.92084 0.91121 0.91337 0.92042 0.91460 0.92082 0.76441 0.88197 0.89083 0.88889 0.91020 0.86023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.91 37.16 0.37 -0.52 16 2 C -0.13 -0.79 5.93 -26.73 -0.16 -0.95 16 3 C -0.12 -0.84 5.21 -26.73 -0.14 -0.98 16 4 C -0.12 -0.87 5.21 -26.73 -0.14 -1.01 16 5 C -0.12 -1.01 5.21 -26.73 -0.14 -1.15 16 6 C -0.12 -1.07 4.97 -26.74 -0.13 -1.21 16 7 C -0.10 -1.17 4.03 -26.73 -0.11 -1.28 16 8 C -0.11 -1.39 2.72 -91.77 -0.25 -1.64 16 9 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 10 C -0.14 -1.54 8.85 37.16 0.33 -1.21 16 11 C 0.51 9.14 6.89 -10.99 -0.08 9.06 16 12 O -0.53 -11.51 13.66 5.56 0.08 -11.43 16 13 N -0.67 -12.74 5.18 -9.91 -0.05 -12.79 16 14 C 0.15 3.46 6.25 -83.77 -0.52 2.94 16 15 C -0.23 -5.50 8.66 -39.10 -0.34 -5.84 16 16 C -0.09 -2.07 10.02 -39.69 -0.40 -2.47 16 17 C -0.23 -5.78 9.79 -38.84 -0.38 -6.16 16 18 C 0.12 3.24 5.57 -106.85 -0.59 2.64 16 19 C -0.46 -12.33 9.05 -37.74 -0.34 -12.68 16 20 H 0.08 1.99 7.90 -52.48 -0.41 1.57 16 21 C 0.08 1.92 5.16 -17.35 -0.09 1.83 16 22 N -0.80 -20.18 10.94 55.55 0.61 -19.57 16 23 Si 0.91 18.57 29.59 -169.99 -5.03 13.54 16 24 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 25 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 26 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 27 C -0.18 -4.70 8.60 -38.69 -0.33 -5.03 16 28 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.06 0.54 8.14 -51.92 -0.42 0.11 16 39 H 0.06 0.53 6.57 -51.93 -0.34 0.19 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.07 0.94 7.95 -51.93 -0.41 0.53 16 42 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 43 H 0.06 0.64 7.68 -51.93 -0.40 0.24 16 44 H 0.07 0.57 6.57 -51.93 -0.34 0.23 16 45 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.40 6.54 8.39 -40.82 -0.34 6.19 16 47 H 0.10 2.40 6.48 -52.49 -0.34 2.06 16 48 H 0.09 1.91 8.06 -52.48 -0.42 1.49 16 49 H 0.09 2.20 8.06 -52.49 -0.42 1.77 16 50 H 0.28 6.41 8.30 -40.82 -0.34 6.07 16 51 H 0.12 3.17 6.17 -52.48 -0.32 2.84 16 LS Contribution 406.98 15.07 6.13 6.13 Total: -1.00 -29.54 406.98 -10.95 -40.48 By element: Atomic # 1 Polarization: 18.53 SS G_CDS: -9.24 Total: 9.29 kcal Atomic # 6 Polarization: -22.21 SS G_CDS: -3.44 Total: -25.65 kcal Atomic # 7 Polarization: -32.91 SS G_CDS: 0.56 Total: -32.36 kcal Atomic # 8 Polarization: -11.51 SS G_CDS: 0.08 Total: -11.43 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -5.03 Total: 13.54 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -29.54 -10.95 -40.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181120400.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.406 kcal (2) G-P(sol) polarization free energy of solvation -29.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds