Wall clock time and date at job start Tue Mar 31 2020 12:28:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.47222 * 2 1 4 4 C 1.52996 * 109.47469 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.47469 * 179.97438 * 4 3 2 6 6 C 1.52994 * 109.47309 * 180.02562 * 5 4 3 7 7 C 1.52996 * 109.47177 * 180.02562 * 6 5 4 8 8 C 1.53001 * 109.47391 * 179.97438 * 7 6 5 9 9 H 1.09001 * 109.47034 * 304.99707 * 8 7 6 10 10 C 1.53006 * 109.47304 * 64.99466 * 8 7 6 11 11 C 1.50695 * 109.47357 * 184.99617 * 8 7 6 12 12 O 1.21281 * 119.99961 * 0.02562 * 11 8 7 13 13 N 1.34780 * 120.00176 * 180.27049 * 11 8 7 14 14 C 1.39932 * 120.00432 * 174.61499 * 13 11 8 15 15 C 1.39291 * 119.94584 * 325.55369 * 14 13 11 16 16 C 1.38484 * 120.42924 * 179.75906 * 15 14 13 17 17 C 1.37684 * 120.32223 * 0.52017 * 16 15 14 18 18 C 1.40743 * 119.88220 * 359.73554 * 17 16 15 19 19 C 1.41406 * 120.20686 * 180.02562 * 18 17 16 20 20 H 1.08006 * 120.00264 * 25.13050 * 19 18 17 21 21 C 1.39932 * 119.99813 * 205.13594 * 19 18 17 22 22 N 1.30828 * 120.00407 * 16.78457 * 21 19 18 23 23 Si 1.86802 * 119.99954 * 196.79044 * 21 19 18 24 24 H 1.48499 * 109.47447 * 59.99486 * 23 21 19 25 25 H 1.48506 * 109.47100 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.46848 * 299.99449 * 23 21 19 27 27 C 1.38241 * 119.95314 * 145.82878 * 14 13 11 28 28 H 1.08995 * 109.47030 * 300.00175 * 1 2 3 29 29 H 1.08998 * 109.46752 * 60.00225 * 1 2 3 30 30 H 1.09004 * 109.46686 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47119 * 240.00145 * 2 1 3 32 32 H 1.08998 * 109.47304 * 120.00303 * 2 1 3 33 33 H 1.09003 * 109.46956 * 60.00045 * 3 2 1 34 34 H 1.08998 * 109.47229 * 300.00349 * 3 2 1 35 35 H 1.09003 * 109.46752 * 60.00218 * 4 3 2 36 36 H 1.08998 * 109.47424 * 300.00528 * 4 3 2 37 37 H 1.08999 * 109.46596 * 59.99998 * 5 4 3 38 38 H 1.09008 * 109.46774 * 300.00335 * 5 4 3 39 39 H 1.08995 * 109.47171 * 59.99685 * 6 5 4 40 40 H 1.09005 * 109.46716 * 300.00039 * 6 5 4 41 41 H 1.08995 * 109.47616 * 59.99603 * 7 6 5 42 42 H 1.09005 * 109.47040 * 299.99486 * 7 6 5 43 43 H 1.08997 * 109.47305 * 180.02562 * 10 8 7 44 44 H 1.08996 * 109.46754 * 300.00570 * 10 8 7 45 45 H 1.09001 * 109.46878 * 60.00145 * 10 8 7 46 46 H 0.97010 * 119.99721 * 354.62214 * 13 11 8 47 47 H 1.08001 * 119.78458 * 0.02562 * 15 14 13 48 48 H 1.08005 * 119.84120 * 180.23373 * 16 15 14 49 49 H 1.08000 * 120.05680 * 179.76932 * 17 16 15 50 50 H 0.96997 * 120.00726 * 180.02562 * 22 21 19 51 51 H 1.08008 * 120.15573 * 359.95746 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0801 2.8850 0.0000 6 6 5.6100 2.8850 0.0000 7 6 6.1200 4.3275 0.0000 8 6 7.6500 4.3276 0.0006 9 1 8.0130 3.7383 0.8427 10 6 8.1606 3.7177 -1.3064 11 6 8.1522 5.7430 0.1244 12 8 7.3641 6.6613 0.2047 13 7 9.4773 5.9889 0.1409 14 6 9.9443 7.3080 0.1420 15 6 9.2471 8.2930 -0.5536 16 6 9.6975 9.6025 -0.5551 17 6 10.8463 9.9433 0.1229 18 6 11.5641 8.9577 0.8258 19 6 12.7446 9.3001 1.5250 20 1 12.8925 10.3122 1.8718 21 6 13.7212 8.3277 1.7673 22 7 13.7149 7.2103 1.0869 23 14 15.0339 8.6249 3.0627 24 1 14.3885 8.8227 4.3854 25 1 15.9417 7.4513 3.1259 26 1 15.8150 9.8368 2.7069 27 6 11.0999 7.6305 0.8288 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9563 -0.8899 35 1 3.9337 0.9286 -0.8892 36 1 3.9331 0.9288 0.8908 37 1 3.7163 3.3993 0.8895 38 1 3.7170 3.3983 -0.8905 39 1 5.9733 2.3708 -0.8897 40 1 5.9733 2.3716 0.8903 41 1 5.7567 4.8414 0.8899 42 1 5.7567 4.8413 -0.8901 43 1 9.2506 3.7173 -1.3057 44 1 7.7973 2.6939 -1.3958 45 1 7.7976 4.3069 -2.1485 46 1 10.1074 5.2513 0.1518 47 1 8.3471 8.0345 -1.0918 48 1 9.1474 10.3594 -1.0946 49 1 11.1957 10.9652 0.1158 50 1 14.3916 6.5361 1.2551 51 1 11.6432 6.8667 1.3654 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001181120400.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:40 Heat of formation + Delta-G solvation = -84.663660 kcal Electronic energy + Delta-G solvation = -25390.004661 eV Core-core repulsion = 21865.246744 eV Total energy + Delta-G solvation = -3524.757917 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.38663 -39.19103 -37.82953 -36.30412 -35.95899 -35.10709 -33.68652 -31.48186 -30.72762 -29.71762 -27.24113 -27.15364 -25.43119 -23.49987 -23.07281 -22.08052 -21.86364 -21.44397 -20.65199 -19.23791 -18.24129 -17.51584 -16.97295 -16.77597 -16.56278 -16.31221 -15.80472 -15.42917 -15.04264 -14.83827 -14.76544 -14.51586 -14.34108 -14.18107 -13.91092 -13.60492 -13.47392 -13.08510 -13.04715 -12.96087 -12.83033 -12.78627 -12.60410 -12.35275 -12.25357 -12.13113 -11.92310 -11.82878 -11.74441 -11.66463 -11.58211 -11.38793 -11.27259 -11.15211 -11.14104 -10.90362 -10.51174 -9.34457 -8.85791 -8.54847 -6.36272 0.81984 1.03740 1.40076 1.49701 1.53266 1.80356 2.22252 2.28082 2.75386 3.63933 3.68276 3.72464 3.94439 4.03276 4.07209 4.19286 4.27853 4.37403 4.41532 4.45965 4.54556 4.60655 4.70666 4.75554 4.81132 4.83142 4.85104 4.88913 4.94249 4.99744 5.07899 5.10883 5.12200 5.14747 5.16598 5.17394 5.22762 5.26504 5.29969 5.35829 5.38042 5.41157 5.50068 5.56246 5.59401 5.79169 5.85775 6.02041 6.07767 6.33312 6.57601 6.75658 6.93166 6.97483 7.31318 8.34096 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.024654 B = 0.001904 C = 0.001828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.433360 B =14702.983888 C =15313.246106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.125 4.125 3 C -0.122 4.122 4 C -0.115 4.115 5 C -0.120 4.120 6 C -0.111 4.111 7 C -0.095 4.095 8 C -0.099 4.099 9 H 0.119 0.881 10 C -0.141 4.141 11 C 0.504 3.496 12 O -0.569 6.569 13 N -0.662 5.662 14 C 0.150 3.850 15 C -0.242 4.242 16 C -0.085 4.085 17 C -0.250 4.250 18 C 0.092 3.908 19 C -0.500 4.500 20 H 0.076 0.924 21 C 0.039 3.961 22 N -0.821 5.821 23 Si 0.981 3.019 24 H -0.264 1.264 25 H -0.265 1.265 26 H -0.261 1.261 27 C -0.203 4.203 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.056 0.944 34 H 0.058 0.942 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.053 0.947 38 H 0.056 0.944 39 H 0.079 0.921 40 H 0.071 0.929 41 H 0.049 0.951 42 H 0.053 0.947 43 H 0.064 0.936 44 H 0.098 0.902 45 H 0.049 0.951 46 H 0.415 0.585 47 H 0.100 0.900 48 H 0.118 0.882 49 H 0.101 0.899 50 H 0.289 0.711 51 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.737 -17.585 -2.053 23.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.162 4.162 3 C -0.159 4.159 4 C -0.152 4.152 5 C -0.158 4.158 6 C -0.148 4.148 7 C -0.133 4.133 8 C -0.120 4.120 9 H 0.137 0.863 10 C -0.198 4.198 11 C 0.294 3.706 12 O -0.447 6.447 13 N -0.306 5.306 14 C 0.057 3.943 15 C -0.263 4.263 16 C -0.104 4.104 17 C -0.270 4.270 18 C 0.089 3.911 19 C -0.529 4.529 20 H 0.094 0.906 21 C -0.176 4.176 22 N -0.447 5.447 23 Si 0.802 3.198 24 H -0.188 1.188 25 H -0.189 1.189 26 H -0.185 1.185 27 C -0.225 4.225 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.098 0.902 40 H 0.090 0.910 41 H 0.068 0.932 42 H 0.072 0.928 43 H 0.083 0.917 44 H 0.117 0.883 45 H 0.068 0.932 46 H 0.252 0.748 47 H 0.118 0.882 48 H 0.136 0.864 49 H 0.119 0.881 50 H 0.100 0.900 51 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -15.194 -17.212 -2.069 23.052 hybrid contribution 0.930 0.362 0.456 1.097 sum -14.264 -16.850 -1.612 22.136 Atomic orbital electron populations 1.21795 0.95812 1.01855 1.01740 1.21540 0.95984 0.96610 1.02111 1.21634 0.95587 0.96985 1.01737 1.21568 0.95201 0.96107 1.02363 1.21583 0.95301 0.97258 1.01640 1.21613 0.95409 0.94588 1.03226 1.21358 0.91894 0.98163 1.01916 1.21388 0.97950 0.90125 1.02539 0.86340 1.21843 1.01611 1.02290 0.94105 1.21714 0.81318 0.93111 0.74505 1.90665 1.55977 1.48237 1.49842 1.43566 1.07931 1.06610 1.72510 1.17715 0.94841 0.84539 0.97204 1.20454 1.03225 0.93662 1.08931 1.20729 0.95711 0.95461 0.98476 1.21209 1.00221 0.99122 1.06457 1.17773 0.92227 0.91595 0.89468 1.19773 1.02069 0.97584 1.33482 0.90608 1.26694 1.00484 0.93782 0.96666 1.69836 1.33117 1.07672 1.34047 0.85266 0.77019 0.79139 0.78353 1.18833 1.18883 1.18506 1.21026 0.97771 0.98155 1.05557 0.92914 0.92835 0.92312 0.91850 0.91977 0.92525 0.92348 0.91505 0.91753 0.92821 0.92494 0.90247 0.91009 0.93167 0.92772 0.91703 0.88297 0.93200 0.74790 0.88154 0.86376 0.88080 0.89990 0.86786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.91 71.98 0.71 -0.90 16 2 C -0.12 -1.38 5.93 30.60 0.18 -1.20 16 3 C -0.12 -1.53 5.21 30.59 0.16 -1.37 16 4 C -0.11 -1.45 5.21 30.59 0.16 -1.29 16 5 C -0.12 -1.86 5.21 30.59 0.16 -1.70 16 6 C -0.11 -1.72 4.97 30.59 0.15 -1.57 16 7 C -0.10 -2.16 4.03 30.59 0.12 -2.04 16 8 C -0.10 -2.31 2.72 -11.54 -0.03 -2.34 16 9 H 0.12 2.24 8.14 -2.39 -0.02 2.22 16 10 C -0.14 -2.64 8.85 71.98 0.64 -2.00 16 11 C 0.50 17.99 6.89 87.65 0.60 18.59 16 12 O -0.57 -25.24 13.66 -3.03 -0.04 -25.28 16 13 N -0.66 -25.26 5.18 -303.66 -1.57 -26.83 16 14 C 0.15 7.27 6.25 38.10 0.24 7.51 16 15 C -0.24 -11.91 8.66 22.58 0.20 -11.72 16 16 C -0.09 -4.11 10.02 22.20 0.22 -3.89 16 17 C -0.25 -12.94 9.79 22.75 0.22 -12.72 16 18 C 0.09 5.11 5.57 -21.31 -0.12 4.99 16 19 C -0.50 -27.12 9.05 23.46 0.21 -26.90 16 20 H 0.08 3.98 7.90 -2.91 -0.02 3.96 16 21 C 0.04 1.94 5.16 85.25 0.44 2.38 16 22 N -0.82 -41.41 10.94 21.82 0.24 -41.17 16 23 Si 0.98 37.62 29.59 68.60 2.03 39.65 16 24 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 25 H -0.26 -9.45 7.11 99.48 0.71 -8.74 16 26 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 27 C -0.20 -10.75 8.60 22.85 0.20 -10.55 16 28 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.05 0.55 8.14 -2.39 -0.02 0.54 16 30 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 39 H 0.08 1.02 6.57 -2.39 -0.02 1.00 16 40 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 41 H 0.05 1.34 7.95 -2.39 -0.02 1.32 16 42 H 0.05 1.37 8.14 -2.38 -0.02 1.35 16 43 H 0.06 1.19 7.68 -2.39 -0.02 1.17 16 44 H 0.10 1.26 6.57 -2.39 -0.02 1.25 16 45 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 46 H 0.42 13.24 8.39 -92.70 -0.78 12.46 16 47 H 0.10 4.89 6.48 -2.91 -0.02 4.87 16 48 H 0.12 4.91 8.06 -2.91 -0.02 4.89 16 49 H 0.10 4.89 8.06 -2.91 -0.02 4.87 16 50 H 0.29 13.07 8.30 -92.71 -0.77 12.31 16 51 H 0.11 6.08 6.17 -2.91 -0.02 6.06 16 Total: -1.00 -65.23 406.98 5.23 -60.01 By element: Atomic # 1 Polarization: 40.22 SS G_CDS: 0.11 Total: 40.33 kcal Atomic # 6 Polarization: -51.17 SS G_CDS: 4.47 Total: -46.71 kcal Atomic # 7 Polarization: -66.66 SS G_CDS: -1.34 Total: -68.00 kcal Atomic # 8 Polarization: -25.24 SS G_CDS: -0.04 Total: -25.28 kcal Atomic # 14 Polarization: 37.62 SS G_CDS: 2.03 Total: 39.65 kcal Total: -65.23 5.23 -60.01 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181120400.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.658 kcal (2) G-P(sol) polarization free energy of solvation -65.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds