Wall clock time and date at job start Tue Mar 31 2020 11:47:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.46629 * 2 1 4 4 C 1.50701 * 109.47097 * 240.00350 * 2 1 3 5 5 H 1.07991 * 120.00157 * 240.87697 * 4 2 1 6 6 C 1.37878 * 119.99922 * 60.87927 * 4 2 1 7 7 N 1.31515 * 120.00123 * 194.22714 * 6 4 2 8 8 Si 1.86804 * 120.00089 * 14.21828 * 6 4 2 9 9 H 1.48510 * 109.46738 * 84.09724 * 8 6 4 10 10 H 1.48495 * 109.47596 * 204.09629 * 8 6 4 11 11 H 1.48498 * 109.47479 * 324.10430 * 8 6 4 12 12 C 1.53001 * 109.47375 * 120.00417 * 2 1 3 13 13 N 1.46909 * 109.46669 * 300.00155 * 12 2 1 14 14 C 1.46900 * 110.99368 * 180.02562 * 13 12 2 15 15 H 1.09004 * 112.85288 * 334.66435 * 14 13 12 16 16 C 1.53782 * 113.61641 * 105.86624 * 14 13 12 17 17 C 1.53781 * 87.08276 * 139.97801 * 16 14 13 18 18 H 1.08991 * 113.61080 * 220.01926 * 17 16 14 19 19 O 1.42896 * 113.61314 * 89.20051 * 17 16 14 20 20 C 1.35894 * 117.00235 * 92.70309 * 19 17 16 21 21 C 1.38729 * 120.05762 * 173.85189 * 20 19 17 22 22 C 1.38147 * 119.94516 * 179.70183 * 21 20 19 23 23 C 1.38266 * 120.05444 * 0.59101 * 22 21 20 24 24 C 1.38269 * 120.11121 * 359.68243 * 23 22 21 25 25 C 1.38143 * 120.05586 * 0.02562 * 24 23 22 26 26 C 1.53781 * 113.61330 * 203.47095 * 14 13 12 27 27 C 1.53002 * 113.61200 * 334.56766 * 26 14 13 28 28 C 1.52998 * 113.61729 * 105.46484 * 26 14 13 29 29 H 1.08999 * 109.47387 * 313.25385 * 1 2 3 30 30 H 1.09000 * 109.47360 * 73.25830 * 1 2 3 31 31 H 1.09000 * 109.46310 * 193.25850 * 1 2 3 32 32 H 1.09000 * 109.46763 * 179.97438 * 3 2 1 33 33 H 1.08989 * 109.47510 * 300.00306 * 3 2 1 34 34 H 1.09005 * 109.46907 * 60.00422 * 3 2 1 35 35 H 0.96997 * 120.00164 * 179.97438 * 7 6 4 36 36 H 1.08996 * 109.46959 * 59.99998 * 12 2 1 37 37 H 1.08994 * 109.46734 * 180.02562 * 12 2 1 38 38 H 1.00897 * 110.99746 * 303.95057 * 13 12 2 39 39 H 1.08998 * 113.60856 * 254.52809 * 16 14 13 40 40 H 1.08997 * 113.61038 * 25.42402 * 16 14 13 41 41 H 1.08005 * 120.03135 * 359.97438 * 21 20 19 42 42 H 1.07998 * 119.97532 * 180.32070 * 22 21 20 43 43 H 1.08002 * 119.94773 * 179.69956 * 23 22 21 44 44 H 1.07994 * 119.97460 * 179.97438 * 24 23 22 45 45 H 1.07997 * 120.02959 * 179.97438 * 25 24 23 46 46 H 1.09005 * 109.47179 * 60.00011 * 27 26 14 47 47 H 1.08999 * 109.47216 * 179.97438 * 27 26 14 48 48 H 1.09002 * 109.47135 * 299.99843 * 27 26 14 49 49 H 1.09000 * 109.46928 * 60.00512 * 28 26 14 50 50 H 1.09000 * 109.47013 * 179.97438 * 28 26 14 51 51 H 1.09000 * 109.47340 * 300.00376 * 28 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6415 -1.5966 -1.1316 6 6 1.7143 -0.2287 -2.4827 7 7 1.9040 -0.9812 -3.5444 8 14 1.0137 1.4927 -2.6711 9 1 2.1244 2.4777 -2.7095 10 1 0.2352 1.5750 -3.9329 11 1 0.1247 1.7940 -1.5204 12 6 2.0401 -0.7213 1.2492 13 7 1.5504 -0.0288 2.4487 14 6 2.0220 -0.6947 3.6702 15 1 2.2431 -1.7512 3.5181 16 6 3.1411 0.0705 4.3962 17 6 2.4453 -0.3173 5.7116 18 1 2.4372 0.4815 6.4531 19 8 2.8875 -1.5664 6.2464 20 6 3.9050 -1.5268 7.1463 21 6 4.2992 -2.6848 7.8008 22 6 5.3379 -2.6430 8.7106 23 6 5.9764 -1.4462 8.9782 24 6 5.5817 -0.2896 8.3314 25 6 4.5475 -0.3272 7.4163 26 6 1.1409 -0.4208 4.9005 27 6 0.3647 0.8951 4.8176 28 6 0.2612 -1.6068 5.3007 29 1 -0.3634 0.7042 0.7485 30 1 -0.3634 0.2960 -0.9841 31 1 -0.3632 -1.0003 0.2357 32 1 3.1300 1.4426 0.0005 33 1 1.6766 1.9564 -0.8898 34 1 1.6766 1.9563 0.8901 35 1 1.6799 -0.6426 -4.4253 36 1 1.6768 -1.7490 1.2491 37 1 3.1301 -0.7209 1.2493 38 1 1.8198 0.9434 2.4402 39 1 4.1268 -0.3786 4.2747 40 1 3.1360 1.1424 4.1989 41 1 3.7974 -3.6190 7.5960 42 1 5.6486 -3.5452 9.2166 43 1 6.7851 -1.4146 9.6934 44 1 6.0816 0.6441 8.5424 45 1 4.2392 0.5765 6.9117 46 1 -0.2900 0.8766 3.9463 47 1 -0.2346 1.0209 5.7193 48 1 1.0654 1.7253 4.7280 49 1 0.8921 -2.4637 5.5369 50 1 -0.3316 -1.3405 6.1758 51 1 -0.4032 -1.8614 4.4750 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001182261757.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:46 Heat of formation + Delta-G solvation = 21.860628 kcal Electronic energy + Delta-G solvation = -27340.457478 eV Core-core repulsion = 23820.318800 eV Total energy + Delta-G solvation = -3520.138678 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.00685 -39.26516 -37.20182 -36.31816 -32.85398 -31.30667 -31.27517 -30.30467 -29.76794 -27.34771 -26.24245 -25.53573 -24.89893 -23.57940 -22.90517 -22.24470 -21.84697 -19.06247 -18.59123 -17.98146 -16.32496 -16.03124 -15.92982 -15.64350 -15.28134 -15.01283 -14.90863 -14.33041 -14.12263 -13.98158 -13.65559 -13.20764 -13.10255 -12.85081 -12.73798 -12.45213 -12.35110 -12.22665 -12.12340 -12.05479 -11.80000 -11.78041 -11.67497 -11.35338 -11.14951 -10.92280 -10.78940 -10.39289 -10.25549 -10.13339 -9.99923 -9.82045 -9.76210 -9.23825 -8.95642 -8.57348 -8.37888 -8.36755 -7.81238 -6.07230 -4.02617 1.10519 1.22927 2.93780 3.31440 3.40640 3.44962 3.56618 4.32414 4.39123 4.44360 4.51220 4.63237 4.69506 4.76434 4.87573 5.06029 5.11615 5.15323 5.25229 5.25724 5.33303 5.43918 5.49432 5.58246 5.74204 5.75925 5.81578 5.91011 5.96200 5.99049 6.06005 6.10296 6.15958 6.17672 6.20142 6.25237 6.29466 6.41034 6.43817 6.50951 6.58582 6.60975 6.77408 6.81579 6.92591 7.07432 7.30915 7.41289 7.52870 7.62817 7.85156 7.94594 8.56328 8.98062 9.58947 11.06291 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.022235 B = 0.002776 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.964834 B =10084.778515 C =10419.602270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.041 3.959 3 C -0.149 4.149 4 C -0.512 4.512 5 H 0.071 0.929 6 C 0.073 3.927 7 N -0.897 5.897 8 Si 0.885 3.115 9 H -0.289 1.289 10 H -0.307 1.307 11 H -0.247 1.247 12 C 0.085 3.915 13 N -0.675 5.675 14 C 0.086 3.914 15 H 0.099 0.901 16 C -0.193 4.193 17 C 0.064 3.936 18 H 0.080 0.920 19 O -0.288 6.288 20 C 0.135 3.865 21 C -0.156 4.156 22 C -0.082 4.082 23 C -0.164 4.164 24 C -0.082 4.082 25 C -0.207 4.207 26 C -0.061 4.061 27 C -0.121 4.121 28 C -0.132 4.132 29 H 0.030 0.970 30 H 0.042 0.958 31 H 0.040 0.960 32 H 0.045 0.955 33 H 0.039 0.961 34 H 0.033 0.967 35 H 0.263 0.737 36 H 0.064 0.936 37 H 0.020 0.980 38 H 0.337 0.663 39 H 0.073 0.927 40 H 0.093 0.907 41 H 0.130 0.870 42 H 0.127 0.873 43 H 0.121 0.879 44 H 0.122 0.878 45 H 0.128 0.872 46 H 0.083 0.917 47 H 0.050 0.950 48 H 0.051 0.949 49 H 0.062 0.938 50 H 0.049 0.951 51 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.990 2.218 25.367 25.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.040 3.960 3 C -0.206 4.206 4 C -0.550 4.550 5 H 0.089 0.911 6 C -0.129 4.129 7 N -0.534 5.534 8 Si 0.718 3.282 9 H -0.217 1.217 10 H -0.236 1.236 11 H -0.173 1.173 12 C -0.043 4.043 13 N -0.304 5.304 14 C -0.025 4.025 15 H 0.117 0.883 16 C -0.232 4.232 17 C 0.007 3.993 18 H 0.098 0.902 19 O -0.201 6.201 20 C 0.090 3.910 21 C -0.174 4.174 22 C -0.100 4.100 23 C -0.182 4.182 24 C -0.100 4.100 25 C -0.226 4.226 26 C -0.062 4.062 27 C -0.178 4.178 28 C -0.189 4.189 29 H 0.049 0.951 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.064 0.936 33 H 0.058 0.942 34 H 0.051 0.949 35 H 0.072 0.928 36 H 0.083 0.917 37 H 0.039 0.961 38 H 0.157 0.843 39 H 0.092 0.908 40 H 0.111 0.889 41 H 0.147 0.853 42 H 0.145 0.855 43 H 0.139 0.861 44 H 0.140 0.860 45 H 0.146 0.854 46 H 0.101 0.899 47 H 0.070 0.930 48 H 0.070 0.930 49 H 0.081 0.919 50 H 0.068 0.932 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.247 1.699 25.050 25.207 hybrid contribution 0.934 1.448 -0.296 1.748 sum 3.181 3.147 24.753 25.154 Atomic orbital electron populations 1.22053 0.97425 0.99523 0.99175 1.18477 0.92861 0.91415 0.93289 1.22365 1.00310 0.99194 0.98687 1.20870 1.33223 1.12385 0.88538 0.91116 1.24982 0.94738 0.97291 0.95861 1.69967 1.48740 1.35938 0.98767 0.87289 0.79339 0.85559 0.76020 1.21669 1.23604 1.17266 1.21989 0.96059 0.97821 0.88467 1.60486 1.62794 1.06053 1.01113 1.23034 0.91523 0.98588 0.89398 0.88341 1.24274 1.00408 1.01574 0.96975 1.23459 0.97119 0.84592 0.94096 0.90206 1.86068 1.47714 1.31720 1.54624 1.19088 0.88283 0.94147 0.89490 1.20478 1.00355 0.97168 0.99416 1.20961 0.94557 0.98075 0.96452 1.21046 1.01933 0.92920 1.02348 1.20962 0.95635 0.98397 0.95009 1.21326 1.00309 0.97557 1.03362 1.22187 0.92533 0.97392 0.94077 1.21467 0.99825 0.93971 1.02519 1.21584 0.99209 0.97236 1.00862 0.95089 0.93878 0.94105 0.93616 0.94234 0.94852 0.92758 0.91701 0.96120 0.84296 0.90841 0.88896 0.85251 0.85514 0.86106 0.85985 0.85426 0.89859 0.93049 0.92965 0.91878 0.93173 0.91845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.71 7.46 37.16 0.28 -2.43 16 2 C 0.04 0.91 0.57 -155.65 -0.09 0.82 16 3 C -0.15 -3.10 7.36 37.16 0.27 -2.83 16 4 C -0.51 -14.08 8.62 -34.44 -0.30 -14.38 16 5 H 0.07 2.12 7.99 -52.49 -0.42 1.70 16 6 C 0.07 2.09 5.29 -17.82 -0.09 1.99 16 7 N -0.90 -27.46 13.96 55.43 0.77 -26.68 16 8 Si 0.89 21.91 22.74 -169.99 -3.87 18.04 16 9 H -0.29 -7.10 7.10 56.52 0.40 -6.69 16 10 H -0.31 -7.77 7.11 56.52 0.40 -7.36 16 11 H -0.25 -5.66 4.73 56.52 0.27 -5.40 16 12 C 0.08 1.64 4.40 -3.82 -0.02 1.62 16 13 N -0.67 -10.46 5.03 -105.86 -0.53 -10.99 16 14 C 0.09 1.16 3.55 -66.90 -0.24 0.92 16 15 H 0.10 1.48 7.84 -51.93 -0.41 1.07 16 16 C -0.19 -2.26 7.08 -25.92 -0.18 -2.44 16 17 C 0.06 0.71 2.72 -25.83 -0.07 0.64 16 18 H 0.08 0.79 6.72 -51.93 -0.35 0.44 16 19 O -0.29 -3.53 8.61 -19.41 -0.17 -3.70 16 20 C 0.14 1.56 6.68 -39.22 -0.26 1.30 16 21 C -0.16 -1.61 9.99 -39.43 -0.39 -2.00 16 22 C -0.08 -0.72 10.04 -39.60 -0.40 -1.12 16 23 C -0.16 -1.39 10.04 -39.56 -0.40 -1.79 16 24 C -0.08 -0.74 10.04 -39.60 -0.40 -1.14 16 25 C -0.21 -2.13 9.01 -39.43 -0.36 -2.49 16 26 C -0.06 -0.70 1.35 -153.61 -0.21 -0.91 16 27 C -0.12 -1.27 8.41 37.16 0.31 -0.96 16 28 C -0.13 -1.52 9.05 37.16 0.34 -1.19 16 29 H 0.03 0.60 7.96 -51.93 -0.41 0.19 16 30 H 0.04 1.00 4.40 -51.93 -0.23 0.77 16 31 H 0.04 0.88 8.08 -51.93 -0.42 0.46 16 32 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 33 H 0.04 0.88 2.30 -51.93 -0.12 0.76 16 34 H 0.03 0.59 6.57 -51.93 -0.34 0.25 16 35 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 36 H 0.06 1.32 8.13 -51.93 -0.42 0.90 16 37 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.34 5.00 6.13 -39.29 -0.24 4.76 16 39 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 40 H 0.09 0.99 7.35 -51.93 -0.38 0.61 16 41 H 0.13 1.21 8.06 -52.48 -0.42 0.79 16 42 H 0.13 0.80 8.06 -52.49 -0.42 0.37 16 43 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 44 H 0.12 0.84 8.06 -52.49 -0.42 0.41 16 45 H 0.13 1.20 6.12 -52.49 -0.32 0.88 16 46 H 0.08 1.00 7.77 -51.93 -0.40 0.60 16 47 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.05 0.51 7.35 -51.93 -0.38 0.13 16 49 H 0.06 0.76 6.97 -51.93 -0.36 0.40 16 50 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 51 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 LS Contribution 381.97 15.07 5.76 5.76 Total: -1.00 -29.89 381.97 -8.94 -38.83 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: -8.71 Total: 5.14 kcal Atomic # 6 Polarization: -24.19 SS G_CDS: -2.20 Total: -26.39 kcal Atomic # 7 Polarization: -37.92 SS G_CDS: 0.24 Total: -37.68 kcal Atomic # 8 Polarization: -3.53 SS G_CDS: -0.17 Total: -3.70 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -3.87 Total: 18.04 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -29.89 -8.94 -38.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182261757.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.693 kcal (2) G-P(sol) polarization free energy of solvation -29.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.832 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds