Wall clock time and date at job start Tue Mar 31 2020 11:47:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47464 * 2 1 4 4 C 1.50701 * 109.47286 * 239.99682 * 2 1 3 5 5 H 1.07998 * 120.00673 * 240.00408 * 4 2 1 6 6 C 1.37877 * 119.99833 * 60.00438 * 4 2 1 7 7 N 1.31520 * 119.99941 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 120.00362 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47178 * 89.99468 * 8 6 4 10 10 H 1.48500 * 109.47222 * 210.00168 * 8 6 4 11 11 H 1.48500 * 109.46669 * 329.99563 * 8 6 4 12 12 C 1.53004 * 109.47003 * 120.00117 * 2 1 3 13 13 N 1.46896 * 109.47140 * 299.99884 * 12 2 1 14 14 C 1.46897 * 111.00026 * 180.02562 * 13 12 2 15 15 H 1.09000 * 112.91135 * 26.74600 * 14 13 12 16 16 C 1.53786 * 113.61155 * 255.49275 * 14 13 12 17 17 C 1.53781 * 87.08241 * 220.01677 * 16 14 13 18 18 H 1.09003 * 113.61029 * 139.98001 * 17 16 14 19 19 O 1.42895 * 113.61755 * 270.80128 * 17 16 14 20 20 C 1.35901 * 117.00058 * 272.94369 * 19 17 16 21 21 C 1.38732 * 120.05490 * 4.72129 * 20 19 17 22 22 C 1.38143 * 119.94269 * 179.70153 * 21 20 19 23 23 C 1.38272 * 120.05375 * 0.60493 * 22 21 20 24 24 C 1.38263 * 120.11199 * 359.67557 * 23 22 21 25 25 C 1.38148 * 120.05704 * 0.02562 * 24 23 22 26 26 C 1.53779 * 113.61510 * 158.00249 * 14 13 12 27 27 C 1.52995 * 113.61637 * 25.42558 * 26 14 13 28 28 C 1.53008 * 113.61118 * 254.52672 * 26 14 13 29 29 H 1.08996 * 109.47247 * 299.99917 * 1 2 3 30 30 H 1.09002 * 109.47009 * 60.00253 * 1 2 3 31 31 H 1.09003 * 109.47188 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47365 * 179.97438 * 3 2 1 33 33 H 1.08994 * 109.47098 * 299.99928 * 3 2 1 34 34 H 1.08996 * 109.46821 * 59.99822 * 3 2 1 35 35 H 0.96998 * 120.00104 * 179.97438 * 7 6 4 36 36 H 1.09008 * 109.47088 * 180.02562 * 12 2 1 37 37 H 1.09003 * 109.46911 * 60.00121 * 12 2 1 38 38 H 1.00903 * 111.00057 * 56.04637 * 13 12 2 39 39 H 1.09004 * 113.61096 * 105.47329 * 16 14 13 40 40 H 1.08995 * 113.61626 * 334.56955 * 16 14 13 41 41 H 1.08001 * 120.02809 * 0.02562 * 21 20 19 42 42 H 1.08001 * 119.97774 * 180.28019 * 22 21 20 43 43 H 1.07998 * 119.94130 * 179.70103 * 23 22 21 44 44 H 1.07998 * 119.97155 * 180.02562 * 24 23 22 45 45 H 1.08001 * 120.02887 * 180.02562 * 25 24 23 46 46 H 1.09007 * 109.47374 * 177.00635 * 27 26 14 47 47 H 1.08999 * 109.47431 * 297.00648 * 27 26 14 48 48 H 1.08998 * 109.47347 * 57.00294 * 27 26 14 49 49 H 1.08997 * 109.47171 * 302.99600 * 28 26 14 50 50 H 1.08997 * 109.47078 * 62.99436 * 28 26 14 51 51 H 1.08998 * 109.47004 * 182.99935 * 28 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1314 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3214 -1.1204 -4.0080 9 1 1.3428 -2.1617 -4.4119 10 1 2.4867 -0.1414 -5.1123 11 1 3.6293 -1.7583 -3.7122 12 6 2.0399 -0.7213 1.2493 13 7 1.5503 -0.0288 2.4487 14 6 2.0218 -0.6946 3.6703 15 1 2.9574 -1.2347 3.5251 16 6 0.9364 -1.5221 4.3789 17 6 1.5093 -0.9932 5.7043 18 1 0.7457 -0.7401 6.4399 19 8 2.5509 -1.8091 6.2439 20 6 2.1741 -2.8438 7.0404 21 6 0.8282 -3.1291 7.2187 22 6 0.4480 -4.1853 8.0239 23 6 1.4072 -4.9500 8.6619 24 6 2.7491 -4.6640 8.4904 25 6 3.1347 -3.6128 7.6813 26 6 2.0229 0.2180 4.9080 27 6 1.0165 1.3672 4.8231 28 6 3.4200 0.6797 5.3277 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 3.1300 1.4424 0.0005 33 1 1.6768 1.9563 -0.8899 34 1 1.6767 1.9563 0.8899 35 1 0.7089 1.1613 -3.4844 36 1 3.1300 -0.7209 1.2495 37 1 1.6766 -1.7490 1.2492 38 1 0.5437 0.0413 2.4402 39 1 1.0545 -2.5981 4.2507 40 1 -0.0777 -1.1792 4.1737 41 1 0.0785 -2.5293 6.7242 42 1 -0.5995 -4.4107 8.1594 43 1 1.1078 -5.7722 9.2948 44 1 3.4964 -5.2630 8.9895 45 1 4.1830 -3.3901 7.5474 46 1 1.0361 1.9368 5.7523 47 1 1.2799 2.0202 3.9910 48 1 0.0164 0.9635 4.6654 49 1 4.0499 -0.1904 5.5124 50 1 3.8576 1.2828 4.5322 51 1 3.3476 1.2755 6.2376 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001182261758.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:49 Heat of formation + Delta-G solvation = 2.850426 kcal Electronic energy + Delta-G solvation = -27281.596617 eV Core-core repulsion = 23760.633595 eV Total energy + Delta-G solvation = -3520.963022 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.96406 -39.19327 -37.01220 -36.04041 -32.84594 -31.26183 -30.74882 -30.12531 -29.58739 -27.27698 -25.56366 -25.27694 -24.97380 -23.39341 -22.88351 -22.14968 -21.79660 -18.84380 -18.39196 -17.92717 -16.30598 -15.97569 -15.77188 -15.46207 -15.13136 -14.86149 -14.57334 -14.26738 -14.07835 -13.84554 -13.61510 -13.04406 -12.93447 -12.77007 -12.56153 -12.22170 -12.16381 -12.04424 -11.91393 -11.76120 -11.65934 -11.26457 -11.16286 -11.03397 -11.01461 -10.73826 -10.62139 -10.60857 -10.20293 -10.09202 -10.04746 -9.98722 -9.37743 -9.20290 -8.98643 -8.61391 -8.33603 -8.28038 -7.63305 -5.90476 -4.00612 1.14158 1.26745 2.98910 3.31645 3.38740 3.42093 3.60328 4.38366 4.43647 4.47048 4.62890 4.69196 4.74449 4.84493 4.92137 5.11562 5.18154 5.23960 5.33728 5.35109 5.37703 5.50279 5.56954 5.65904 5.79525 5.81394 5.87951 5.99158 6.07087 6.10927 6.15304 6.21469 6.27574 6.32847 6.34558 6.44778 6.48185 6.52368 6.65402 6.73006 6.90622 7.07714 7.17735 7.35444 7.38735 7.49127 7.75575 7.77132 7.84917 7.99553 8.22379 8.35853 8.57259 9.00945 9.64403 11.09999 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.018838 B = 0.002778 C = 0.002611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.977418 B =10075.804550 C =10723.304804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.069 3.931 3 C -0.119 4.119 4 C -0.506 4.506 5 H 0.051 0.949 6 C 0.065 3.935 7 N -0.885 5.885 8 Si 0.887 3.113 9 H -0.283 1.283 10 H -0.287 1.287 11 H -0.276 1.276 12 C 0.076 3.924 13 N -0.670 5.670 14 C 0.086 3.914 15 H 0.096 0.904 16 C -0.195 4.195 17 C 0.065 3.935 18 H 0.079 0.921 19 O -0.289 6.289 20 C 0.136 3.864 21 C -0.206 4.206 22 C -0.082 4.082 23 C -0.165 4.165 24 C -0.083 4.083 25 C -0.156 4.156 26 C -0.059 4.059 27 C -0.120 4.120 28 C -0.131 4.131 29 H 0.010 0.990 30 H 0.083 0.917 31 H 0.018 0.982 32 H 0.018 0.982 33 H 0.073 0.927 34 H 0.020 0.980 35 H 0.258 0.742 36 H 0.055 0.945 37 H 0.012 0.988 38 H 0.339 0.661 39 H 0.071 0.929 40 H 0.093 0.907 41 H 0.128 0.872 42 H 0.122 0.878 43 H 0.121 0.879 44 H 0.126 0.874 45 H 0.129 0.871 46 H 0.050 0.950 47 H 0.082 0.918 48 H 0.052 0.948 49 H 0.061 0.939 50 H 0.062 0.938 51 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.456 -5.253 21.987 22.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.069 3.931 3 C -0.176 4.176 4 C -0.545 4.545 5 H 0.069 0.931 6 C -0.136 4.136 7 N -0.524 5.524 8 Si 0.716 3.284 9 H -0.209 1.209 10 H -0.213 1.213 11 H -0.201 1.201 12 C -0.053 4.053 13 N -0.300 5.300 14 C -0.026 4.026 15 H 0.114 0.886 16 C -0.234 4.234 17 C 0.008 3.992 18 H 0.096 0.904 19 O -0.202 6.202 20 C 0.090 3.910 21 C -0.225 4.225 22 C -0.100 4.100 23 C -0.183 4.183 24 C -0.101 4.101 25 C -0.175 4.175 26 C -0.061 4.061 27 C -0.177 4.177 28 C -0.188 4.188 29 H 0.029 0.971 30 H 0.102 0.898 31 H 0.037 0.963 32 H 0.037 0.963 33 H 0.092 0.908 34 H 0.039 0.961 35 H 0.068 0.932 36 H 0.074 0.926 37 H 0.030 0.970 38 H 0.159 0.841 39 H 0.090 0.910 40 H 0.111 0.889 41 H 0.146 0.854 42 H 0.140 0.860 43 H 0.139 0.861 44 H 0.144 0.856 45 H 0.147 0.853 46 H 0.069 0.931 47 H 0.101 0.899 48 H 0.071 0.929 49 H 0.080 0.920 50 H 0.081 0.919 51 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 0.169 -4.590 21.732 22.212 hybrid contribution -0.529 -1.497 -0.867 1.809 sum -0.360 -6.087 20.864 21.737 Atomic orbital electron populations 1.21835 0.98628 0.98300 1.00222 1.18082 0.91987 0.93043 0.90008 1.21632 0.97789 0.98191 1.00021 1.21123 1.31066 1.11760 0.90535 0.93053 1.24881 0.95083 0.94933 0.98666 1.69833 1.36933 1.22773 1.22874 0.86672 0.79222 0.79435 0.83089 1.20898 1.21302 1.20060 1.22169 0.98832 0.94416 0.89844 1.60456 1.16097 1.52631 1.00865 1.23031 0.97380 0.92426 0.89726 0.88574 1.24311 1.00555 1.01586 0.96985 1.23421 0.89516 0.92331 0.93951 0.90352 1.86067 1.34652 1.38864 1.60595 1.19089 0.92856 0.88373 0.90635 1.21340 0.95025 1.01618 1.04489 1.20967 0.99540 0.94143 0.95350 1.21037 0.93102 1.01478 1.02688 1.20950 0.96189 0.96000 0.96947 1.20467 0.99081 0.97459 1.00486 1.22139 0.96832 0.92937 0.94150 1.21451 0.97192 0.96845 1.02204 1.21572 0.95277 1.01266 1.00681 0.97131 0.89837 0.96295 0.96325 0.90808 0.96116 0.93222 0.92611 0.96951 0.84100 0.90998 0.88881 0.85392 0.85986 0.86136 0.85558 0.85298 0.93114 0.89871 0.92879 0.92007 0.91884 0.93186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.08 7.92 37.16 0.29 -2.78 16 2 C 0.07 1.66 0.57 -155.66 -0.09 1.57 16 3 C -0.12 -2.86 8.09 37.16 0.30 -2.56 16 4 C -0.51 -13.63 8.01 -34.44 -0.28 -13.91 16 5 H 0.05 1.39 7.74 -52.49 -0.41 0.98 16 6 C 0.07 1.77 5.15 -17.82 -0.09 1.68 16 7 N -0.89 -24.48 9.35 55.43 0.52 -23.96 16 8 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 9 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 10 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 C 0.08 1.56 4.45 -3.82 -0.02 1.54 16 13 N -0.67 -11.40 4.86 -105.86 -0.51 -11.92 16 14 C 0.09 1.25 3.54 -66.90 -0.24 1.02 16 15 H 0.10 1.54 7.85 -51.93 -0.41 1.13 16 16 C -0.19 -2.47 6.73 -25.92 -0.17 -2.64 16 17 C 0.06 0.76 2.69 -25.92 -0.07 0.69 16 18 H 0.08 0.84 7.01 -51.93 -0.36 0.47 16 19 O -0.29 -3.70 8.66 -19.43 -0.17 -3.87 16 20 C 0.14 1.63 6.68 -39.22 -0.26 1.37 16 21 C -0.21 -2.24 8.95 -39.43 -0.35 -2.59 16 22 C -0.08 -0.78 10.04 -39.60 -0.40 -1.17 16 23 C -0.16 -1.46 10.04 -39.56 -0.40 -1.86 16 24 C -0.08 -0.75 10.04 -39.61 -0.40 -1.15 16 25 C -0.16 -1.68 9.99 -39.43 -0.39 -2.07 16 26 C -0.06 -0.74 1.35 -153.70 -0.21 -0.95 16 27 C -0.12 -1.39 8.31 37.15 0.31 -1.08 16 28 C -0.13 -1.61 8.99 37.16 0.33 -1.27 16 29 H 0.01 0.21 6.57 -51.93 -0.34 -0.14 16 30 H 0.08 2.17 6.07 -51.93 -0.32 1.85 16 31 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.07 1.96 6.07 -51.93 -0.32 1.64 16 34 H 0.02 0.45 7.60 -51.93 -0.39 0.05 16 35 H 0.26 6.87 8.31 -40.82 -0.34 6.54 16 36 H 0.06 1.20 8.13 -51.92 -0.42 0.77 16 37 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 38 H 0.34 5.67 6.09 -39.29 -0.24 5.43 16 39 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.09 1.10 7.31 -51.93 -0.38 0.72 16 41 H 0.13 1.29 6.02 -52.49 -0.32 0.97 16 42 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 43 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 44 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 45 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 46 H 0.05 0.51 8.14 -51.92 -0.42 0.09 16 47 H 0.08 1.09 7.88 -51.93 -0.41 0.68 16 48 H 0.05 0.58 7.32 -51.93 -0.38 0.20 16 49 H 0.06 0.78 7.07 -51.93 -0.37 0.42 16 50 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 51 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 391.55 15.07 5.90 5.90 Total: -1.00 -27.69 391.55 -10.25 -37.94 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: -8.84 Total: 5.90 kcal Atomic # 6 Polarization: -24.04 SS G_CDS: -2.13 Total: -26.16 kcal Atomic # 7 Polarization: -35.88 SS G_CDS: 0.00 Total: -35.88 kcal Atomic # 8 Polarization: -3.70 SS G_CDS: -0.17 Total: -3.87 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -27.69 -10.25 -37.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182261758.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.793 kcal (2) G-P(sol) polarization free energy of solvation -27.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds